Wall clock time and date at job start Tue Mar 31 2020 16:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46957 * 2 1 4 4 N 1.46499 * 109.47065 * 239.99625 * 2 1 3 5 5 C 1.34777 * 119.99866 * 84.99978 * 4 2 1 6 6 O 1.21610 * 120.00311 * 359.97438 * 5 4 2 7 7 C 1.47382 * 119.99720 * 179.97438 * 5 4 2 8 8 C 1.47020 * 127.18861 * 180.02562 * 7 5 4 9 9 C 1.34184 * 105.95126 * 179.97438 * 8 7 5 10 10 O 1.34213 * 109.12197 * 359.97438 * 9 8 7 11 11 C 1.33651 * 110.91150 * 359.76798 * 10 9 8 12 12 C 1.50698 * 109.47344 * 119.99193 * 2 1 3 13 13 O 1.21277 * 119.99917 * 119.99970 * 12 2 1 14 14 N 1.34782 * 120.00331 * 300.00535 * 12 2 1 15 15 C 1.39122 * 120.00001 * 184.71752 * 14 12 2 16 16 C 1.38642 * 120.28845 * 325.82564 * 15 14 12 17 17 C 1.38218 * 120.03287 * 180.29252 * 16 15 14 18 18 C 1.38865 * 120.62026 * 359.45128 * 17 16 15 19 19 C 1.36468 * 120.57348 * 0.55172 * 18 17 16 20 20 C 1.40744 * 119.94068 * 359.72750 * 19 18 17 21 21 C 1.41071 * 120.29859 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99958 * 148.70250 * 21 20 19 23 23 C 1.39958 * 119.99887 * 328.70306 * 21 20 19 24 24 N 1.30857 * 119.99804 * 167.68847 * 23 21 20 25 25 Si 1.86803 * 120.00084 * 347.68803 * 23 21 20 26 26 H 1.48503 * 109.47109 * 92.56066 * 25 23 21 27 27 H 1.48501 * 109.46821 * 212.55700 * 25 23 21 28 28 H 1.48495 * 109.46855 * 332.55703 * 25 23 21 29 29 H 1.08998 * 109.47346 * 300.00479 * 1 2 3 30 30 H 1.08994 * 109.46960 * 60.00655 * 1 2 3 31 31 H 1.08995 * 109.46786 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99973 * 264.99349 * 4 2 1 33 33 H 1.07999 * 127.02744 * 359.93895 * 8 7 5 34 34 H 1.07993 * 125.43811 * 179.97438 * 9 8 7 35 35 H 1.08001 * 125.80350 * 180.26438 * 11 10 9 36 36 H 0.97000 * 119.99523 * 4.72033 * 14 12 2 37 37 H 1.07998 * 119.98308 * 0.02562 * 16 15 14 38 38 H 1.08001 * 119.69089 * 179.70225 * 17 16 15 39 39 H 1.07998 * 119.71544 * 180.30465 * 18 17 16 40 40 H 1.07997 * 120.02756 * 179.74804 * 19 18 17 41 41 H 0.97004 * 119.99382 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8574 1.1614 -2.4120 7 6 2.6389 -0.7131 -3.5603 8 6 2.8394 -0.1386 -4.8986 9 6 3.2971 -1.1403 -5.6652 10 8 3.3914 -2.2543 -4.9227 11 6 3.0093 -2.0219 -3.6632 12 6 2.0324 -0.7102 1.2305 13 8 2.7297 -1.6963 1.1194 14 7 1.7068 -0.2497 2.4547 15 6 2.2494 -0.8452 3.5889 16 6 2.5033 -2.2080 3.6097 17 6 3.0368 -2.7951 4.7415 18 6 3.3343 -2.0303 5.8617 19 6 3.0945 -0.6869 5.8687 20 6 2.5464 -0.0653 4.7312 21 6 2.2960 1.3231 4.7299 22 1 2.3699 1.8843 3.8102 23 6 1.9517 1.9731 5.9206 24 7 1.9548 3.2804 5.9768 25 14 1.4879 0.9744 7.4296 26 1 2.6967 0.7423 8.2604 27 1 0.4769 1.7179 8.2236 28 1 0.9213 -0.3307 7.0044 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6318 -1.1525 33 1 2.6553 0.8812 -5.2029 34 1 3.5494 -1.0625 -6.7124 35 1 2.9940 -2.7476 -2.8635 36 1 1.0941 0.4969 2.5447 37 1 2.2800 -2.8118 2.7425 38 1 3.2279 -3.8580 4.7533 39 1 3.7553 -2.5034 6.7365 40 1 3.3255 -0.1012 6.7462 41 1 1.7159 3.7309 6.8020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550100994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:45 Heat of formation + Delta-G solvation = -31.949115 kcal Electronic energy + Delta-G solvation = -26826.037095 eV Core-core repulsion = 22865.558290 eV Total energy + Delta-G solvation = -3960.478805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = -0.70 seconds Orbital eigenvalues (eV) -42.77671 -40.32940 -39.14906 -37.57655 -34.94655 -34.12879 -33.68718 -33.16799 -31.25219 -30.52114 -29.66321 -28.47886 -25.35646 -24.85002 -23.43299 -22.01526 -21.70756 -20.73393 -20.18985 -19.69603 -18.78174 -17.54373 -17.23110 -16.74507 -16.39695 -16.00232 -15.79179 -15.35950 -15.07333 -14.83342 -14.49915 -14.13252 -13.82658 -13.66191 -13.47715 -13.16809 -13.15329 -12.65744 -12.59907 -12.43554 -12.32048 -12.14526 -11.71042 -11.61847 -11.06594 -10.99585 -10.73499 -10.15772 -10.06115 -10.02194 -9.87754 -9.52293 -9.46178 -9.24120 -9.06786 -8.95434 -7.71627 -7.22301 -7.02760 -4.60148 1.12155 1.83415 2.28975 2.59321 2.64632 2.87859 3.01095 3.05832 3.19291 3.24607 3.26660 3.74695 3.89426 4.34614 4.43766 4.43939 4.79675 4.94505 5.04780 5.18733 5.26003 5.30198 5.40799 5.58766 5.64030 5.77416 6.00913 6.01895 6.05984 6.08827 6.23786 6.30473 6.54648 6.65513 6.67504 6.88809 7.09485 7.26403 7.39592 7.42721 7.58843 7.73656 7.93081 8.07214 8.15766 8.19528 8.48232 8.63219 8.73271 9.98656 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002790 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.459735 B =10034.721609 C =10965.082189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.117 0.883 4 N -0.706 5.706 5 C 0.590 3.410 6 O -0.536 6.536 7 C -0.233 4.233 8 C -0.164 4.164 9 C -0.043 4.043 10 O -0.175 6.175 11 C 0.025 3.975 12 C 0.499 3.501 13 O -0.540 6.540 14 N -0.628 5.628 15 C 0.024 3.976 16 C -0.073 4.073 17 C -0.229 4.229 18 C -0.086 4.086 19 C -0.223 4.223 20 C 0.085 3.915 21 C -0.451 4.451 22 H 0.091 0.909 23 C 0.084 3.916 24 N -0.808 5.808 25 Si 0.914 3.086 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.242 1.242 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.407 0.593 33 H 0.160 0.840 34 H 0.209 0.791 35 H 0.213 0.787 36 H 0.409 0.591 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -7.666 -15.314 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.135 0.865 4 N -0.360 5.360 5 C 0.377 3.623 6 O -0.414 6.414 7 C -0.238 4.238 8 C -0.184 4.184 9 C -0.109 4.109 10 O -0.070 6.070 11 C -0.046 4.046 12 C 0.285 3.715 13 O -0.418 6.418 14 N -0.270 5.270 15 C -0.070 4.070 16 C -0.093 4.093 17 C -0.248 4.248 18 C -0.105 4.105 19 C -0.243 4.243 20 C 0.080 3.920 21 C -0.480 4.480 22 H 0.109 0.891 23 C -0.135 4.135 24 N -0.433 5.433 25 Si 0.741 3.259 26 H -0.197 1.197 27 H -0.220 1.220 28 H -0.166 1.166 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.243 0.757 33 H 0.178 0.822 34 H 0.225 0.775 35 H 0.230 0.770 36 H 0.245 0.755 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.781 -7.458 -15.468 17.264 hybrid contribution -0.259 0.001 0.969 1.003 sum -2.040 -7.457 -14.499 16.432 Atomic orbital electron populations 1.22146 0.92784 1.03101 1.03821 1.20773 0.95674 0.98291 0.83364 0.86520 1.45555 1.67415 1.14597 1.08384 1.17223 0.77177 0.86071 0.81806 1.90795 1.50364 1.15292 1.84919 1.21496 1.11880 0.94629 0.95775 1.22795 1.03587 1.00935 0.91039 1.23952 1.05765 0.83417 0.97797 1.83800 1.66601 1.36758 1.19802 1.24558 0.97803 0.96874 0.85332 1.20431 0.80945 0.85355 0.84760 1.90624 1.38730 1.26112 1.86347 1.42778 1.45223 1.35200 1.03840 1.17592 1.09446 0.91167 0.88819 1.20768 0.98456 0.92795 0.97299 1.20332 1.11578 0.98125 0.94800 1.20395 0.99022 0.94106 0.96967 1.20629 1.09126 0.94978 0.99552 1.17555 0.90530 0.93043 0.90834 1.19298 1.40843 0.91138 0.96739 0.89078 1.26153 0.92129 0.95011 1.00229 1.69662 1.34739 1.09404 1.29452 0.86287 0.78585 0.81077 0.79926 1.19682 1.22047 1.16555 0.90466 0.90869 0.91753 0.75662 0.82244 0.77475 0.77021 0.75478 0.86613 0.88517 0.88746 0.87877 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.38 37.16 0.35 -1.55 16 2 C 0.13 1.80 2.99 -69.08 -0.21 1.60 16 3 H 0.12 1.76 7.58 -51.93 -0.39 1.37 16 4 N -0.71 -9.20 4.94 -56.02 -0.28 -9.47 16 5 C 0.59 8.28 7.78 -12.54 -0.10 8.18 16 6 O -0.54 -9.26 16.65 5.27 0.09 -9.18 16 7 C -0.23 -2.69 6.31 -103.28 -0.65 -3.34 16 8 C -0.16 -1.65 11.01 -37.45 -0.41 -2.06 16 9 C -0.04 -0.33 12.03 29.30 0.35 0.02 16 10 O -0.17 -1.55 10.52 7.66 0.08 -1.47 16 11 C 0.02 0.22 11.61 30.07 0.35 0.57 16 12 C 0.50 8.61 7.07 -10.98 -0.08 8.53 16 13 O -0.54 -10.43 13.21 5.56 0.07 -10.36 16 14 N -0.63 -11.80 4.86 -9.48 -0.05 -11.85 16 15 C 0.02 0.52 6.35 -83.18 -0.53 0.00 16 16 C -0.07 -1.58 8.70 -39.44 -0.34 -1.92 16 17 C -0.23 -4.76 10.04 -39.36 -0.39 -5.15 16 18 C -0.09 -1.83 9.97 -39.99 -0.40 -2.23 16 19 C -0.22 -5.20 6.94 -39.27 -0.27 -5.47 16 20 C 0.08 2.04 5.14 -106.65 -0.55 1.49 16 21 C -0.45 -11.31 8.85 -37.86 -0.34 -11.64 16 22 H 0.09 2.36 7.70 -52.49 -0.40 1.96 16 23 C 0.08 2.08 5.47 -17.32 -0.09 1.98 16 24 N -0.81 -20.54 13.93 55.55 0.77 -19.77 16 25 Si 0.91 19.89 24.40 -169.99 -4.15 15.74 16 26 H -0.27 -5.78 6.67 56.52 0.38 -5.40 16 27 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 28 H -0.24 -5.37 6.68 56.52 0.38 -4.99 16 29 H 0.08 0.85 7.46 -51.93 -0.39 0.46 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.41 4.69 6.76 -40.82 -0.28 4.41 16 33 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.21 1.25 7.47 -52.49 -0.39 0.85 16 36 H 0.41 7.03 7.32 -40.82 -0.30 6.74 16 37 H 0.12 2.41 6.15 -52.49 -0.32 2.09 16 38 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.10 2.38 4.42 -52.49 -0.23 2.15 16 41 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -31.24 350.28 -5.92 -37.16 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -4.43 Total: 14.92 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.31 Total: -11.00 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.45 Total: -41.09 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.24 Total: -21.01 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.15 Total: 15.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.24 -5.92 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550100994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.208 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.70 seconds