Wall clock time and date at job start Tue Mar 31 2020 16:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46957 * 2 1 4 4 N 1.46499 * 109.47065 * 239.99625 * 2 1 3 5 5 C 1.34777 * 119.99866 * 84.99978 * 4 2 1 6 6 O 1.21610 * 120.00311 * 359.97438 * 5 4 2 7 7 C 1.47382 * 119.99720 * 179.97438 * 5 4 2 8 8 C 1.47020 * 127.18861 * 180.02562 * 7 5 4 9 9 C 1.34184 * 105.95126 * 179.97438 * 8 7 5 10 10 O 1.34213 * 109.12197 * 359.97438 * 9 8 7 11 11 C 1.33651 * 110.91150 * 359.76798 * 10 9 8 12 12 C 1.50698 * 109.47344 * 119.99193 * 2 1 3 13 13 O 1.21277 * 119.99917 * 119.99970 * 12 2 1 14 14 N 1.34782 * 120.00331 * 300.00535 * 12 2 1 15 15 C 1.39122 * 120.00001 * 184.71752 * 14 12 2 16 16 C 1.38642 * 120.28845 * 325.82564 * 15 14 12 17 17 C 1.38218 * 120.03287 * 180.29252 * 16 15 14 18 18 C 1.38865 * 120.62026 * 359.45128 * 17 16 15 19 19 C 1.36468 * 120.57348 * 0.55172 * 18 17 16 20 20 C 1.40744 * 119.94068 * 359.72750 * 19 18 17 21 21 C 1.41071 * 120.29859 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99958 * 148.70250 * 21 20 19 23 23 C 1.39958 * 119.99887 * 328.70306 * 21 20 19 24 24 N 1.30857 * 119.99804 * 167.68847 * 23 21 20 25 25 Si 1.86803 * 120.00084 * 347.68803 * 23 21 20 26 26 H 1.48503 * 109.47109 * 92.56066 * 25 23 21 27 27 H 1.48501 * 109.46821 * 212.55700 * 25 23 21 28 28 H 1.48495 * 109.46855 * 332.55703 * 25 23 21 29 29 H 1.08998 * 109.47346 * 300.00479 * 1 2 3 30 30 H 1.08994 * 109.46960 * 60.00655 * 1 2 3 31 31 H 1.08995 * 109.46786 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99973 * 264.99349 * 4 2 1 33 33 H 1.07999 * 127.02744 * 359.93895 * 8 7 5 34 34 H 1.07993 * 125.43811 * 179.97438 * 9 8 7 35 35 H 1.08001 * 125.80350 * 180.26438 * 11 10 9 36 36 H 0.97000 * 119.99523 * 4.72033 * 14 12 2 37 37 H 1.07998 * 119.98308 * 0.02562 * 16 15 14 38 38 H 1.08001 * 119.69089 * 179.70225 * 17 16 15 39 39 H 1.07998 * 119.71544 * 180.30465 * 18 17 16 40 40 H 1.07997 * 120.02756 * 179.74804 * 19 18 17 41 41 H 0.97004 * 119.99382 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8574 1.1614 -2.4120 7 6 2.6389 -0.7131 -3.5603 8 6 2.8394 -0.1386 -4.8986 9 6 3.2971 -1.1403 -5.6652 10 8 3.3914 -2.2543 -4.9227 11 6 3.0093 -2.0219 -3.6632 12 6 2.0324 -0.7102 1.2305 13 8 2.7297 -1.6963 1.1194 14 7 1.7068 -0.2497 2.4547 15 6 2.2494 -0.8452 3.5889 16 6 2.5033 -2.2080 3.6097 17 6 3.0368 -2.7951 4.7415 18 6 3.3343 -2.0303 5.8617 19 6 3.0945 -0.6869 5.8687 20 6 2.5464 -0.0653 4.7312 21 6 2.2960 1.3231 4.7299 22 1 2.3699 1.8843 3.8102 23 6 1.9517 1.9731 5.9206 24 7 1.9548 3.2804 5.9768 25 14 1.4879 0.9744 7.4296 26 1 2.6967 0.7423 8.2604 27 1 0.4769 1.7179 8.2236 28 1 0.9213 -0.3307 7.0044 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6318 -1.1525 33 1 2.6553 0.8812 -5.2029 34 1 3.5494 -1.0625 -6.7124 35 1 2.9940 -2.7476 -2.8635 36 1 1.0941 0.4969 2.5447 37 1 2.2800 -2.8118 2.7425 38 1 3.2279 -3.8580 4.7533 39 1 3.7553 -2.5034 6.7365 40 1 3.3255 -0.1012 6.7462 41 1 1.7159 3.7309 6.8020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550100994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:41 Heat of formation + Delta-G solvation = -53.150004 kcal Electronic energy + Delta-G solvation = -26826.956435 eV Core-core repulsion = 22865.558290 eV Total energy + Delta-G solvation = -3961.398145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.48974 -41.71770 -40.44633 -39.18332 -36.16814 -35.68670 -35.49435 -33.99613 -32.35578 -32.23245 -30.60592 -29.93357 -27.04007 -26.03913 -24.61000 -23.58422 -22.44536 -22.26961 -21.22939 -21.11036 -19.76355 -19.33020 -18.67293 -17.93968 -17.36902 -17.14559 -17.07506 -16.73282 -16.28593 -15.92950 -15.83940 -15.72516 -15.27210 -15.08016 -14.77467 -14.53988 -14.24109 -13.95143 -13.85061 -13.69078 -13.50086 -13.39347 -13.27840 -12.87410 -12.78364 -12.58840 -12.41670 -11.78239 -11.61525 -11.31012 -11.18606 -11.03627 -10.88350 -10.67131 -10.32259 -9.75639 -9.49123 -8.91634 -8.85774 -6.47942 0.31075 0.62869 0.83230 1.12133 1.29609 1.38467 1.51365 1.58062 1.73013 2.06436 2.13110 2.24932 2.42262 2.63807 3.47733 3.50281 3.62367 3.77051 3.93505 4.03834 4.11730 4.30353 4.43434 4.51698 4.60479 4.66279 4.72476 4.76549 4.81875 4.95177 4.99169 5.10374 5.16165 5.21324 5.32615 5.32986 5.59702 5.69834 5.90011 5.97438 6.00059 6.13018 6.37531 6.38670 6.50297 6.78123 6.80483 7.05404 7.17204 8.19799 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002790 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.459735 B =10034.721609 C =10965.082189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.105 0.895 4 N -0.699 5.699 5 C 0.590 3.410 6 O -0.578 6.578 7 C -0.270 4.270 8 C -0.196 4.196 9 C -0.021 4.021 10 O -0.175 6.175 11 C 0.045 3.955 12 C 0.505 3.495 13 O -0.556 6.556 14 N -0.632 5.632 15 C 0.023 3.977 16 C -0.086 4.086 17 C -0.215 4.215 18 C -0.093 4.093 19 C -0.237 4.237 20 C 0.061 3.939 21 C -0.473 4.473 22 H 0.066 0.934 23 C 0.050 3.950 24 N -0.849 5.849 25 Si 0.964 3.036 26 H -0.263 1.263 27 H -0.284 1.284 28 H -0.248 1.248 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.415 0.585 33 H 0.157 0.843 34 H 0.250 0.750 35 H 0.241 0.759 36 H 0.414 0.586 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -10.653 -15.958 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.026 3.974 3 H 0.122 0.878 4 N -0.353 5.353 5 C 0.379 3.621 6 O -0.459 6.459 7 C -0.274 4.274 8 C -0.216 4.216 9 C -0.087 4.087 10 O -0.070 6.070 11 C -0.026 4.026 12 C 0.293 3.707 13 O -0.436 6.436 14 N -0.274 5.274 15 C -0.071 4.071 16 C -0.106 4.106 17 C -0.234 4.234 18 C -0.111 4.111 19 C -0.257 4.257 20 C 0.057 3.943 21 C -0.503 4.503 22 H 0.084 0.916 23 C -0.165 4.165 24 N -0.476 5.476 25 Si 0.789 3.211 26 H -0.189 1.189 27 H -0.211 1.211 28 H -0.172 1.172 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.174 0.826 34 H 0.266 0.734 35 H 0.257 0.743 36 H 0.251 0.749 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.581 -10.467 -16.129 19.292 hybrid contribution -0.239 0.746 1.013 1.280 sum -1.819 -9.722 -15.115 18.064 Atomic orbital electron populations 1.22107 0.90713 1.04034 1.04234 1.20659 0.97171 0.97169 0.82378 0.87754 1.45496 1.67148 1.14864 1.07756 1.17605 0.76328 0.85654 0.82483 1.90765 1.52421 1.17114 1.85593 1.21465 1.14440 0.96069 0.95446 1.22962 1.05669 1.01791 0.91148 1.24657 1.03128 0.81992 0.98879 1.83849 1.66197 1.37158 1.19768 1.25010 0.95455 0.96217 0.85877 1.20849 0.80100 0.84878 0.84922 1.90598 1.39336 1.26997 1.86650 1.42826 1.45465 1.35423 1.03726 1.17835 1.08444 0.91679 0.89186 1.21010 0.98952 0.92506 0.98180 1.20797 1.08982 0.99774 0.93883 1.20755 0.98602 0.93352 0.98415 1.20804 1.09386 0.96169 0.99305 1.17728 0.91513 0.92819 0.92223 1.19225 1.43020 0.91838 0.96218 0.91637 1.26747 0.91884 0.95644 1.02220 1.69698 1.36890 1.10464 1.30519 0.85518 0.78616 0.79543 0.77436 1.18901 1.21105 1.17167 0.89734 0.90787 0.90508 0.74624 0.82568 0.73404 0.74270 0.74881 0.85742 0.85261 0.85449 0.88095 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.38 71.98 0.68 -2.85 16 2 C 0.13 3.82 2.99 44.25 0.13 3.95 16 3 H 0.10 3.28 7.58 -2.38 -0.02 3.26 16 4 N -0.70 -17.89 4.94 -449.41 -2.22 -20.11 16 5 C 0.59 16.70 7.78 86.65 0.67 17.37 16 6 O -0.58 -20.70 16.65 -4.06 -0.07 -20.77 16 7 C -0.27 -6.05 6.31 -18.99 -0.12 -6.17 16 8 C -0.20 -3.81 11.01 23.65 0.26 -3.55 16 9 C -0.02 -0.27 12.03 66.89 0.80 0.53 16 10 O -0.18 -2.63 10.52 4.50 0.05 -2.58 16 11 C 0.05 0.71 11.61 67.39 0.78 1.49 16 12 C 0.51 17.24 7.07 87.66 0.62 17.86 16 13 O -0.56 -20.87 13.21 -3.02 -0.04 -20.91 16 14 N -0.63 -23.85 4.86 -302.29 -1.47 -25.32 16 15 C 0.02 1.01 6.35 38.88 0.25 1.26 16 16 C -0.09 -3.55 8.70 22.36 0.19 -3.35 16 17 C -0.21 -8.22 10.04 22.42 0.22 -8.00 16 18 C -0.09 -3.68 9.97 22.01 0.22 -3.46 16 19 C -0.24 -10.77 6.94 22.47 0.16 -10.62 16 20 C 0.06 2.95 5.14 -21.18 -0.11 2.85 16 21 C -0.47 -24.53 8.85 23.38 0.21 -24.32 16 22 H 0.07 3.60 7.70 -2.91 -0.02 3.58 16 23 C 0.05 2.52 5.47 85.25 0.47 2.99 16 24 N -0.85 -44.57 13.93 21.83 0.30 -44.27 16 25 Si 0.96 40.96 24.40 68.60 1.67 42.63 16 26 H -0.26 -10.75 6.67 99.48 0.66 -10.08 16 27 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.25 -10.64 6.68 99.48 0.66 -9.98 16 29 H 0.08 1.82 7.46 -2.39 -0.02 1.81 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.42 9.04 6.76 -92.71 -0.63 8.41 16 33 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.25 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.24 2.12 7.47 -2.91 -0.02 2.10 16 36 H 0.41 14.66 7.32 -92.71 -0.68 13.98 16 37 H 0.12 4.89 6.15 -2.91 -0.02 4.87 16 38 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 39 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 40 H 0.10 4.57 4.42 -2.91 -0.01 4.56 16 41 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 Total: -1.00 -68.56 350.28 3.38 -65.18 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.28 Total: 40.15 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 5.43 Total: -14.01 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -3.39 Total: -89.70 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.06 Total: -44.26 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.67 Total: 42.63 kcal Total: -68.56 3.38 -65.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550100994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.035 kcal (2) G-P(sol) polarization free energy of solvation -68.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds