Wall clock time and date at job start Tue Mar 31 2020 14:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27492 * 124.86175 * 2 1 4 4 N 1.38796 * 116.82896 * 179.97438 * 3 2 1 5 5 C 1.35156 * 113.44067 * 359.97438 * 4 3 2 6 6 N 1.32309 * 108.84987 * 180.02562 * 5 4 3 7 7 C 1.33836 * 109.09407 * 359.96901 * 6 5 4 8 8 C 1.50699 * 125.82358 * 180.02562 * 7 6 5 9 9 C 1.34467 * 108.35108 * 0.02774 * 7 6 5 10 10 C 1.50699 * 126.42761 * 180.24477 * 9 7 6 11 11 N 1.46500 * 109.47003 * 269.69281 * 10 9 7 12 12 C 1.39684 * 119.99679 * 179.97438 * 11 10 9 13 13 C 1.39342 * 119.95452 * 359.72529 * 12 11 10 14 14 C 1.38476 * 120.42321 * 179.71917 * 13 12 11 15 15 C 1.37695 * 120.32523 * 0.55633 * 14 13 12 16 16 C 1.40745 * 119.89398 * 359.72281 * 15 14 13 17 17 C 1.41409 * 120.20957 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00075 * 24.41109 * 17 16 15 19 19 C 1.39928 * 119.99702 * 204.41685 * 17 16 15 20 20 N 1.30828 * 120.00453 * 17.87272 * 19 17 16 21 21 Si 1.86801 * 119.99554 * 197.87049 * 19 17 16 22 22 H 1.48498 * 109.47483 * 60.00023 * 21 19 17 23 23 H 1.48501 * 109.47407 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47485 * 299.99963 * 21 19 17 25 25 C 1.38279 * 119.95053 * 180.02562 * 12 11 10 26 26 S 1.75764 * 124.87178 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47392 * 300.02586 * 1 2 3 29 29 H 1.09005 * 109.47225 * 60.03194 * 1 2 3 30 30 H 1.08996 * 109.47425 * 269.95950 * 8 7 6 31 31 H 1.09007 * 109.47001 * 29.95832 * 8 7 6 32 32 H 1.09003 * 109.46705 * 149.95642 * 8 7 6 33 33 H 1.09004 * 109.47091 * 29.68977 * 10 9 7 34 34 H 1.08997 * 109.47196 * 149.69002 * 10 9 7 35 35 H 0.96996 * 120.00381 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.78365 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.83984 * 180.27885 * 14 13 12 38 38 H 1.08003 * 120.05289 * 179.74336 * 15 14 13 39 39 H 0.96998 * 119.99870 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.15917 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2357 1.0461 0.0000 4 7 3.6101 0.8522 0.0006 5 6 3.9692 -0.4508 0.0016 6 7 5.2899 -0.5303 0.0026 7 6 5.8028 0.7059 0.0016 8 6 7.2695 1.0523 0.0017 9 6 4.7863 1.5861 0.0005 10 6 4.9034 3.0885 -0.0061 11 7 4.9375 3.5816 1.3730 12 6 5.0441 4.9519 1.6222 13 6 5.1237 5.8484 0.5585 14 6 5.2238 7.2093 0.7944 15 6 5.2573 7.6908 2.0839 16 6 5.1836 6.7969 3.1686 17 6 5.2168 7.2841 4.4957 18 1 4.9074 8.2970 4.7069 19 6 5.6508 6.4538 5.5351 20 7 6.3437 5.3772 5.2665 21 14 5.2406 6.8829 7.3063 22 1 3.7660 6.9290 7.4757 23 1 5.8101 5.8515 8.2101 24 1 5.8190 8.2090 7.6411 25 6 5.0767 5.4163 2.9243 26 16 2.5119 -1.4420 0.0006 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5142 0.8897 29 1 -0.3634 0.5134 -0.8903 30 1 7.6227 1.1375 1.0293 31 1 7.8279 0.2687 -0.5106 32 1 7.4187 2.0011 -0.5137 33 1 5.8205 3.3792 -0.5186 34 1 4.0459 3.5176 -0.5243 35 1 4.8861 2.9567 2.1130 36 1 5.1023 5.4799 -0.4565 37 1 5.2804 7.8961 -0.0372 38 1 5.3396 8.7527 2.2628 39 1 6.6448 4.8019 5.9871 40 1 5.0196 4.7220 3.7496 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560156522.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:23 Heat of formation + Delta-G solvation = 143.368058 kcal Electronic energy + Delta-G solvation = -24300.243995 eV Core-core repulsion = 20822.413135 eV Total energy + Delta-G solvation = -3477.830860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.70500 -38.34042 -37.76366 -35.12261 -33.34988 -33.11414 -31.42865 -29.94238 -29.42340 -28.28302 -26.55592 -25.26634 -24.82868 -23.59603 -21.13896 -20.56831 -20.29454 -19.90549 -18.76129 -17.26829 -16.62508 -16.34269 -15.93539 -14.96768 -14.79454 -14.75876 -14.50791 -14.11580 -13.79757 -13.66056 -13.23070 -13.17363 -13.09161 -12.75436 -12.67352 -12.36879 -12.25679 -12.00380 -11.95699 -11.54791 -11.16731 -11.03175 -10.91926 -10.69649 -10.58355 -10.43013 -10.17712 -9.65431 -9.46171 -9.25250 -9.24062 -8.77921 -8.15423 -7.30323 -6.71745 -6.18714 -4.30022 0.20688 0.54364 0.92135 1.58164 1.70242 2.57326 2.89425 3.09784 3.12966 3.23691 3.35037 3.69522 3.98616 4.23550 4.42559 4.59837 4.72568 4.73475 4.87789 4.89927 5.21889 5.24360 5.35715 5.66112 5.77427 5.82344 5.83662 5.89154 6.10664 6.26869 6.40177 6.57471 6.87571 7.08182 7.09312 7.14849 7.37795 7.42786 7.47669 7.78972 7.96341 8.10565 8.17969 8.49112 8.65647 8.83862 9.02312 9.12062 10.26970 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003056 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.045870 B = 9161.105322 C = 9536.381492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.090 3.910 3 N -0.234 5.234 4 N -0.302 5.302 5 C 0.102 3.898 6 N -0.435 5.435 7 C 0.058 3.942 8 C -0.068 4.068 9 C 0.017 3.983 10 C 0.215 3.785 11 N -0.755 5.755 12 C 0.217 3.783 13 C -0.300 4.300 14 C -0.065 4.065 15 C -0.257 4.257 16 C 0.140 3.860 17 C -0.466 4.466 18 H 0.076 0.924 19 C 0.078 3.922 20 N -0.791 5.791 21 Si 0.904 3.096 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.266 1.266 25 C -0.229 4.229 26 S 0.162 5.838 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.390 0.610 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.278 0.722 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -14.438 -9.706 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.208 4.208 3 N -0.046 5.046 4 N -0.078 5.078 5 C -0.266 4.266 6 N -0.160 5.160 7 C -0.075 4.075 8 C -0.126 4.126 9 C -0.098 4.098 10 C 0.089 3.911 11 N -0.389 5.389 12 C 0.119 3.881 13 C -0.322 4.322 14 C -0.084 4.084 15 C -0.277 4.277 16 C 0.137 3.863 17 C -0.495 4.495 18 H 0.094 0.906 19 C -0.139 4.139 20 N -0.417 5.417 21 Si 0.728 3.272 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.253 4.253 26 S 0.397 5.603 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.242 -15.527 -9.800 20.126 hybrid contribution -0.176 1.080 1.122 1.567 sum -8.419 -14.447 -8.679 18.839 Atomic orbital electron populations 1.20597 0.81543 1.05119 1.06011 1.28501 1.02482 0.91305 0.98560 1.73773 0.86849 1.24783 1.19216 1.47704 1.01822 1.06349 1.51909 1.26472 0.98543 0.87165 1.14404 1.70490 1.01364 1.24159 1.19968 1.20732 0.96415 0.86730 1.03627 1.20199 0.86531 1.02193 1.03673 1.21287 0.79738 0.95757 1.12979 1.19347 1.01766 0.82913 0.87035 1.44387 1.85460 1.04955 1.04133 1.17611 0.94957 0.81376 0.94161 1.19855 1.24105 0.93100 0.95186 1.20274 0.98565 0.93932 0.95601 1.20867 1.16551 0.97849 0.92456 1.17301 0.85848 0.90813 0.92349 1.19524 1.39258 0.99313 0.91446 0.90597 1.25869 0.92495 0.94181 1.01371 1.69854 1.24966 1.12074 1.34775 0.86450 0.79948 0.79133 0.81627 1.18961 1.20468 1.19038 1.20706 1.15340 0.96570 0.92669 1.85281 0.88787 1.03551 1.82636 0.88546 0.87822 0.87935 0.90039 0.90521 0.90125 0.90228 0.92104 0.77681 0.89720 0.89584 0.89362 0.91128 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.49 36.01 0.38 0.04 16 2 C 0.09 0.89 7.58 -14.08 -0.11 0.78 16 3 N -0.23 -3.32 11.97 32.88 0.39 -2.93 16 4 N -0.30 -4.84 4.42 -8.74 -0.04 -4.87 16 5 C 0.10 1.56 9.00 -88.74 -0.80 0.76 16 6 N -0.44 -7.15 11.32 -9.76 -0.11 -7.26 16 7 C 0.06 0.91 7.06 -83.05 -0.59 0.32 16 8 C -0.07 -0.86 10.21 36.01 0.37 -0.49 16 9 C 0.02 0.28 6.63 -80.84 -0.54 -0.25 16 10 C 0.22 3.65 5.23 -5.19 -0.03 3.62 16 11 N -0.75 -15.12 5.72 -59.86 -0.34 -15.46 16 12 C 0.22 5.13 6.64 -83.85 -0.56 4.57 16 13 C -0.30 -6.83 9.32 -39.08 -0.36 -7.20 16 14 C -0.06 -1.51 10.02 -39.69 -0.40 -1.90 16 15 C -0.26 -6.52 9.79 -38.83 -0.38 -6.91 16 16 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16 17 C -0.47 -12.68 9.05 -37.74 -0.34 -13.03 16 18 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 19 C 0.08 2.02 5.14 -17.35 -0.09 1.93 16 20 N -0.79 -20.88 10.95 55.55 0.61 -20.27 16 21 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.23 -6.07 8.53 -38.67 -0.33 -6.40 16 26 S 0.16 1.65 23.35 -107.50 -2.51 -0.86 16 27 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.93 7.12 -51.93 -0.37 0.56 16 33 H 0.08 1.25 6.92 -51.93 -0.36 0.89 16 34 H 0.06 1.07 7.95 -51.93 -0.41 0.66 16 35 H 0.39 7.90 8.47 -40.82 -0.35 7.56 16 36 H 0.08 1.73 6.70 -52.48 -0.35 1.38 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 39 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 40 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -32.38 355.27 -10.71 -43.10 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.67 Total: 10.02 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -4.37 Total: -20.90 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.51 Total: -50.79 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.51 Total: -0.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.38 -10.71 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560156522.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.465 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds