Wall clock time and date at job start Tue Mar 31 2020 15:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47166 * 2 1 4 4 H 1.09003 * 109.47327 * 306.04003 * 3 2 1 5 5 C 1.50697 * 109.47170 * 186.04061 * 3 2 1 6 6 H 1.07998 * 120.00317 * 243.88544 * 5 3 2 7 7 C 1.37884 * 119.99836 * 63.89430 * 5 3 2 8 8 N 1.31514 * 119.99633 * 197.56998 * 7 5 3 9 9 Si 1.86790 * 120.00107 * 17.56526 * 7 5 3 10 10 H 1.48500 * 109.47193 * 86.26021 * 9 7 5 11 11 H 1.48498 * 109.47165 * 206.25791 * 9 7 5 12 12 H 1.48508 * 109.47555 * 326.25881 * 9 7 5 13 13 N 1.46905 * 109.47068 * 66.04172 * 3 2 1 14 14 C 1.46895 * 110.99728 * 252.09172 * 13 3 2 15 15 C 1.50703 * 109.46989 * 184.99190 * 14 13 3 16 16 N 1.29904 * 124.85876 * 89.99273 * 15 14 13 17 17 C 1.36062 * 108.79917 * 179.97438 * 16 15 14 18 18 C 1.39584 * 133.80251 * 180.02562 * 17 16 15 19 19 C 1.37680 * 119.72920 * 179.97438 * 18 17 16 20 20 C 1.50710 * 119.78992 * 179.97438 * 19 18 17 21 21 F 1.39892 * 109.47107 * 90.00343 * 20 19 18 22 22 F 1.39903 * 109.47095 * 210.00440 * 20 19 18 23 23 F 1.39905 * 109.46894 * 330.00087 * 20 19 18 24 24 C 1.38718 * 120.42390 * 0.02562 * 19 18 17 25 25 C 1.37909 * 120.47428 * 359.97438 * 24 19 18 26 26 C 1.38673 * 119.87332 * 359.97438 * 25 24 19 27 27 O 1.34236 * 124.85194 * 269.69492 * 15 14 13 28 28 H 1.09000 * 109.46695 * 295.49953 * 1 2 3 29 29 H 1.09001 * 109.47234 * 175.50256 * 1 2 3 30 30 H 1.08994 * 109.47518 * 55.49969 * 1 2 3 31 31 H 1.08997 * 109.47554 * 120.00577 * 2 1 3 32 32 H 1.09000 * 109.46631 * 240.00417 * 2 1 3 33 33 H 0.97003 * 119.99988 * 179.97438 * 8 7 5 34 34 H 1.00895 * 110.99486 * 16.04634 * 13 3 2 35 35 H 1.09006 * 109.47609 * 304.98324 * 14 13 3 36 36 H 1.09002 * 109.47745 * 64.98977 * 14 13 3 37 37 H 1.08005 * 120.13642 * 359.96093 * 18 17 16 38 38 H 1.08001 * 119.76250 * 180.02562 * 24 19 18 39 39 H 1.08002 * 120.06409 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5911 1.9866 -0.8310 5 6 3.5396 1.4451 -0.1495 6 1 4.1610 1.8280 0.6465 7 6 4.1183 0.9588 -1.3027 8 7 5.3932 0.6363 -1.3131 9 14 3.0914 0.7579 -2.8500 10 1 3.0722 2.0388 -3.6012 11 1 3.6816 -0.3062 -3.7011 12 1 1.7038 0.3814 -2.4780 13 7 1.6730 2.0916 1.2657 14 6 0.6035 3.0775 1.0608 15 6 0.3393 3.8077 2.3524 16 7 0.9359 4.9004 2.7231 17 6 0.4496 5.2754 3.9372 18 6 0.7153 6.3426 4.7968 19 6 0.0346 6.4447 5.9892 20 6 0.3208 7.5961 6.9185 21 9 -0.5267 8.6656 6.6106 22 9 0.1025 7.1937 8.2405 23 9 1.6524 7.9976 6.7672 24 6 -0.9124 5.4940 6.3411 25 6 -1.1851 4.4344 5.5016 26 6 -0.5096 4.3165 4.2963 27 8 -0.5504 3.4249 3.2819 28 1 -0.3633 0.4424 0.9276 29 1 -0.3634 -1.0245 -0.0806 30 1 -0.3634 0.5820 -0.8469 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 5.8003 0.2938 -2.1242 34 1 1.4070 1.4082 1.9586 35 1 0.9091 3.7915 0.2959 36 1 -0.3045 2.5672 0.7396 37 1 1.4521 7.0850 4.5278 38 1 -1.4404 5.5848 7.2788 39 1 -1.9240 3.6983 5.7820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565169697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:36 Heat of formation + Delta-G solvation = -105.307155 kcal Electronic energy + Delta-G solvation = -27089.733379 eV Core-core repulsion = 22584.216790 eV Total energy + Delta-G solvation = -4505.516589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -50.45317 -47.96481 -47.90994 -43.47450 -38.66431 -37.06625 -34.97053 -32.91764 -31.95390 -31.65545 -30.13159 -28.08325 -26.45614 -25.35239 -22.88382 -22.75167 -22.42195 -21.55487 -20.13798 -19.15529 -18.78478 -18.70613 -17.84479 -17.09820 -16.94380 -16.45774 -15.52353 -15.11853 -14.99281 -14.90364 -14.64570 -14.48156 -14.32985 -14.13795 -14.06856 -14.05980 -13.80659 -13.47202 -13.22814 -12.88629 -12.71881 -12.53678 -12.24770 -11.95574 -11.88529 -11.75570 -11.58397 -10.99215 -10.81322 -10.59723 -10.57839 -10.06784 -9.66237 -9.45595 -9.38277 -8.78898 -8.44775 -7.66162 -6.11922 -4.03759 0.32525 0.50728 2.15642 2.21954 2.34698 3.08048 3.23297 3.30564 3.31177 3.35033 3.56091 3.88734 4.10629 4.12798 4.37633 4.52822 4.60178 4.75091 4.91641 4.98464 5.11914 5.22438 5.34844 5.56974 5.61461 5.65128 5.69477 5.73291 5.81534 5.87539 5.95831 6.08212 6.34858 6.39952 6.56830 6.67867 7.03774 7.49032 7.57138 7.72804 7.99229 8.60675 9.07798 9.53487 11.01334 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.002474 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.619923 B =11313.386798 C =11985.483390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.151 4.151 3 C 0.198 3.802 4 H 0.025 0.975 5 C -0.505 4.505 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.889 5.889 9 Si 0.857 3.143 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.256 1.256 13 N -0.663 5.663 14 C 0.143 3.857 15 C 0.282 3.718 16 N -0.459 5.459 17 C 0.026 3.974 18 C -0.005 4.005 19 C -0.189 4.189 20 C 0.516 3.484 21 F -0.175 7.175 22 F -0.175 7.175 23 F -0.174 7.174 24 C -0.061 4.061 25 C -0.086 4.086 26 C 0.031 3.969 27 O -0.211 6.211 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.264 0.736 34 H 0.333 0.667 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.516 9.438 14.594 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.190 4.190 3 C 0.090 3.910 4 H 0.043 0.957 5 C -0.543 4.543 6 H 0.100 0.900 7 C -0.128 4.128 8 N -0.526 5.526 9 Si 0.684 3.316 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.180 1.180 13 N -0.295 5.295 14 C 0.013 3.987 15 C 0.070 3.930 16 N -0.187 5.187 17 C -0.086 4.086 18 C -0.024 4.024 19 C -0.191 4.191 20 C 0.462 3.538 21 F -0.157 7.157 22 F -0.157 7.157 23 F -0.155 7.155 24 C -0.079 4.079 25 C -0.104 4.104 26 C -0.021 4.021 27 O -0.102 6.102 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.374 10.182 14.101 23.213 hybrid contribution -1.570 -0.928 -0.543 1.902 sum -16.944 9.253 13.558 23.591 Atomic orbital electron populations 1.21969 0.98435 1.00727 1.00395 1.22599 0.92705 1.01072 1.02612 1.19600 0.97307 0.88477 0.85568 0.95697 1.20918 0.88794 1.41036 1.03537 0.89963 1.24894 0.94780 0.94550 0.98598 1.69982 1.12187 1.42346 1.28085 0.87331 0.81796 0.78112 0.84374 1.20433 1.21452 1.18023 1.60637 1.36725 1.19223 1.12914 1.20758 0.95903 0.96134 0.85932 1.26997 0.83626 0.90452 0.91916 1.70790 1.24778 1.12771 1.10372 1.19777 0.97512 0.97425 0.93891 1.19990 0.96883 0.95539 0.89971 1.19677 1.04231 0.98197 0.97039 1.18061 0.74395 0.82212 0.79156 1.93235 1.71053 1.58517 1.92853 1.93196 1.94492 1.90494 1.37483 1.93222 1.35164 1.91667 1.95453 1.20646 0.95781 0.91947 0.99556 1.19775 1.01040 0.99792 0.89830 1.20492 0.99747 0.90626 0.91263 1.84581 1.53304 1.46336 1.25989 0.93786 0.93561 0.93412 0.92007 0.91439 0.92644 0.84889 0.86237 0.92332 0.83222 0.83147 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.07 37.16 0.34 -2.08 16 2 C -0.15 -2.91 4.53 -26.73 -0.12 -3.03 16 3 C 0.20 4.23 1.73 -68.87 -0.12 4.11 16 4 H 0.03 0.54 6.23 -51.93 -0.32 0.21 16 5 C -0.50 -13.58 9.27 -34.44 -0.32 -13.90 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.07 2.05 5.29 -17.82 -0.09 1.95 16 8 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 9 Si 0.86 19.99 25.84 -169.99 -4.39 15.60 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -5.45 5.59 56.52 0.32 -5.13 16 13 N -0.66 -12.41 6.04 -109.22 -0.66 -13.07 16 14 C 0.14 2.20 5.80 -4.98 -0.03 2.18 16 15 C 0.28 4.38 7.79 -13.09 -0.10 4.28 16 16 N -0.46 -7.68 11.34 -8.70 -0.10 -7.78 16 17 C 0.03 0.37 7.24 -84.71 -0.61 -0.24 16 18 C 0.00 -0.06 9.43 -39.28 -0.37 -0.43 16 19 C -0.19 -1.88 5.45 -104.64 -0.57 -2.45 16 20 C 0.52 4.87 3.36 36.01 0.12 4.99 16 21 F -0.18 -1.70 17.30 2.25 0.04 -1.66 16 22 F -0.18 -1.59 16.44 2.25 0.04 -1.55 16 23 F -0.17 -1.80 16.44 2.25 0.04 -1.76 16 24 C -0.06 -0.51 9.38 -39.52 -0.37 -0.88 16 25 C -0.09 -0.80 10.06 -39.54 -0.40 -1.20 16 26 C 0.03 0.40 7.43 -38.64 -0.29 0.11 16 27 O -0.21 -2.98 10.77 3.60 0.04 -2.94 16 28 H 0.04 0.60 6.72 -51.93 -0.35 0.25 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 32 H 0.07 1.41 4.99 -51.93 -0.26 1.16 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.33 5.78 7.75 -39.29 -0.30 5.47 16 35 H 0.12 1.86 8.02 -51.93 -0.42 1.44 16 36 H 0.06 0.77 6.79 -51.93 -0.35 0.41 16 37 H 0.15 1.63 7.59 -52.48 -0.40 1.23 16 38 H 0.15 0.83 7.58 -52.49 -0.40 0.43 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -30.26 338.17 -6.19 -36.45 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.13 Total: 3.86 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.94 Total: -6.59 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.02 Total: -46.50 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.11 Total: -4.97 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.39 Total: 15.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.26 -6.19 -36.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.854 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds