Wall clock time and date at job start Tue Mar 31 2020 15:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47166 * 2 1 4 4 H 1.09003 * 109.47327 * 306.04003 * 3 2 1 5 5 C 1.50697 * 109.47170 * 186.04061 * 3 2 1 6 6 H 1.07998 * 120.00317 * 243.88544 * 5 3 2 7 7 C 1.37884 * 119.99836 * 63.89430 * 5 3 2 8 8 N 1.31514 * 119.99633 * 197.56998 * 7 5 3 9 9 Si 1.86790 * 120.00107 * 17.56526 * 7 5 3 10 10 H 1.48500 * 109.47193 * 86.26021 * 9 7 5 11 11 H 1.48498 * 109.47165 * 206.25791 * 9 7 5 12 12 H 1.48508 * 109.47555 * 326.25881 * 9 7 5 13 13 N 1.46905 * 109.47068 * 66.04172 * 3 2 1 14 14 C 1.46895 * 110.99728 * 252.09172 * 13 3 2 15 15 C 1.50703 * 109.46989 * 184.99190 * 14 13 3 16 16 N 1.29904 * 124.85876 * 89.99273 * 15 14 13 17 17 C 1.36062 * 108.79917 * 179.97438 * 16 15 14 18 18 C 1.39584 * 133.80251 * 180.02562 * 17 16 15 19 19 C 1.37680 * 119.72920 * 179.97438 * 18 17 16 20 20 C 1.50710 * 119.78992 * 179.97438 * 19 18 17 21 21 F 1.39892 * 109.47107 * 90.00343 * 20 19 18 22 22 F 1.39903 * 109.47095 * 210.00440 * 20 19 18 23 23 F 1.39905 * 109.46894 * 330.00087 * 20 19 18 24 24 C 1.38718 * 120.42390 * 0.02562 * 19 18 17 25 25 C 1.37909 * 120.47428 * 359.97438 * 24 19 18 26 26 C 1.38673 * 119.87332 * 359.97438 * 25 24 19 27 27 O 1.34236 * 124.85194 * 269.69492 * 15 14 13 28 28 H 1.09000 * 109.46695 * 295.49953 * 1 2 3 29 29 H 1.09001 * 109.47234 * 175.50256 * 1 2 3 30 30 H 1.08994 * 109.47518 * 55.49969 * 1 2 3 31 31 H 1.08997 * 109.47554 * 120.00577 * 2 1 3 32 32 H 1.09000 * 109.46631 * 240.00417 * 2 1 3 33 33 H 0.97003 * 119.99988 * 179.97438 * 8 7 5 34 34 H 1.00895 * 110.99486 * 16.04634 * 13 3 2 35 35 H 1.09006 * 109.47609 * 304.98324 * 14 13 3 36 36 H 1.09002 * 109.47745 * 64.98977 * 14 13 3 37 37 H 1.08005 * 120.13642 * 359.96093 * 18 17 16 38 38 H 1.08001 * 119.76250 * 180.02562 * 24 19 18 39 39 H 1.08002 * 120.06409 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5911 1.9866 -0.8310 5 6 3.5396 1.4451 -0.1495 6 1 4.1610 1.8280 0.6465 7 6 4.1183 0.9588 -1.3027 8 7 5.3932 0.6363 -1.3131 9 14 3.0914 0.7579 -2.8500 10 1 3.0722 2.0388 -3.6012 11 1 3.6816 -0.3062 -3.7011 12 1 1.7038 0.3814 -2.4780 13 7 1.6730 2.0916 1.2657 14 6 0.6035 3.0775 1.0608 15 6 0.3393 3.8077 2.3524 16 7 0.9359 4.9004 2.7231 17 6 0.4496 5.2754 3.9372 18 6 0.7153 6.3426 4.7968 19 6 0.0346 6.4447 5.9892 20 6 0.3208 7.5961 6.9185 21 9 -0.5267 8.6656 6.6106 22 9 0.1025 7.1937 8.2405 23 9 1.6524 7.9976 6.7672 24 6 -0.9124 5.4940 6.3411 25 6 -1.1851 4.4344 5.5016 26 6 -0.5096 4.3165 4.2963 27 8 -0.5504 3.4249 3.2819 28 1 -0.3633 0.4424 0.9276 29 1 -0.3634 -1.0245 -0.0806 30 1 -0.3634 0.5820 -0.8469 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 5.8003 0.2938 -2.1242 34 1 1.4070 1.4082 1.9586 35 1 0.9091 3.7915 0.2959 36 1 -0.3045 2.5672 0.7396 37 1 1.4521 7.0850 4.5278 38 1 -1.4404 5.5848 7.2788 39 1 -1.9240 3.6983 5.7820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565169697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:32 Heat of formation + Delta-G solvation = -127.396773 kcal Electronic energy + Delta-G solvation = -27090.691257 eV Core-core repulsion = 22584.216790 eV Total energy + Delta-G solvation = -4506.474466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 5.63 seconds Orbital eigenvalues (eV) -51.22764 -48.73921 -48.68390 -44.48878 -39.54502 -38.56539 -36.05339 -34.64729 -33.43521 -32.62575 -31.19348 -29.58943 -27.61072 -26.55138 -24.26027 -23.67058 -23.52829 -22.67582 -21.76835 -20.02824 -19.55396 -19.51326 -18.89201 -18.70676 -18.03937 -17.62941 -16.81380 -16.74188 -15.97716 -15.78089 -15.69332 -15.44753 -15.29108 -15.11258 -14.91255 -14.83986 -14.82402 -14.78406 -14.46790 -14.32663 -13.79876 -13.70971 -13.49901 -13.34467 -13.15028 -12.74837 -12.69344 -12.57216 -12.43285 -12.31404 -11.66110 -11.65374 -11.41053 -11.29522 -10.52423 -10.27549 -9.73638 -9.15176 -8.24714 -6.21195 -0.58162 -0.36639 1.13628 1.24439 1.38638 1.42687 1.50321 1.51574 2.17468 2.39700 2.44362 2.70646 3.00696 3.07807 3.22568 3.33623 3.49908 3.71757 3.80284 3.91266 4.07306 4.22635 4.30988 4.37479 4.40761 4.50238 4.55723 4.72934 4.81046 4.85468 4.92914 4.96330 5.07984 5.19060 5.23233 5.25818 5.52140 5.75113 5.93663 6.41313 6.53881 6.68414 6.84938 7.40513 8.93054 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.002474 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.619923 B =11313.386798 C =11985.483390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.205 3.795 4 H 0.035 0.965 5 C -0.511 4.511 6 H 0.026 0.974 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.928 3.072 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.217 1.217 13 N -0.683 5.683 14 C 0.149 3.851 15 C 0.272 3.728 16 N -0.494 5.494 17 C -0.009 4.009 18 C -0.018 4.018 19 C -0.184 4.184 20 C 0.522 3.478 21 F -0.175 7.175 22 F -0.169 7.169 23 F -0.181 7.181 24 C -0.044 4.044 25 C -0.077 4.077 26 C 0.018 3.982 27 O -0.210 6.210 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.264 0.736 34 H 0.341 0.659 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.189 0.811 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.498 9.252 15.577 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C 0.097 3.903 4 H 0.053 0.947 5 C -0.550 4.550 6 H 0.044 0.956 7 C -0.184 4.184 8 N -0.586 5.586 9 Si 0.751 3.249 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.139 1.139 13 N -0.316 5.316 14 C 0.019 3.981 15 C 0.060 3.940 16 N -0.223 5.223 17 C -0.120 4.120 18 C -0.037 4.037 19 C -0.187 4.187 20 C 0.468 3.532 21 F -0.157 7.157 22 F -0.150 7.150 23 F -0.162 7.162 24 C -0.062 4.062 25 C -0.095 4.095 26 C -0.033 4.033 27 O -0.101 6.101 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.166 0.834 38 H 0.207 0.793 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.398 10.008 15.120 26.553 hybrid contribution -0.279 -0.740 -0.595 0.990 sum -19.677 9.268 14.525 26.155 Atomic orbital electron populations 1.21884 0.94555 1.02441 1.01825 1.22429 0.96077 0.98706 1.01523 1.19358 0.93506 0.90411 0.87063 0.94725 1.21248 0.91865 1.39904 1.01972 0.95587 1.25812 0.95965 0.94308 1.02341 1.70154 1.14767 1.44635 1.29073 0.86189 0.81824 0.77831 0.79029 1.20279 1.21888 1.13915 1.60308 1.39385 1.19830 1.12057 1.20688 0.96066 0.95231 0.86072 1.26778 0.84394 0.90542 0.92332 1.70692 1.25791 1.13769 1.12041 1.20034 0.99001 0.99061 0.93880 1.20085 0.97638 0.95325 0.90676 1.19827 1.04021 0.98607 0.96201 1.17930 0.74059 0.81962 0.79237 1.93240 1.70994 1.58528 1.92891 1.93211 1.94415 1.90404 1.36966 1.93214 1.35788 1.91724 1.95510 1.21146 0.94352 0.90344 1.00359 1.20269 1.00725 1.00477 0.88039 1.20993 1.00136 0.90100 0.92085 1.84536 1.52917 1.46536 1.26096 0.92005 0.91669 0.92452 0.92801 0.93051 0.92752 0.84049 0.86898 0.89031 0.83366 0.79340 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.07 71.98 0.65 -3.33 16 2 C -0.15 -5.46 4.53 30.59 0.14 -5.33 16 3 C 0.21 8.65 1.73 44.17 0.08 8.73 16 4 H 0.03 1.41 6.23 -2.39 -0.01 1.40 16 5 C -0.51 -28.64 9.27 25.60 0.24 -28.41 16 6 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 9 Si 0.93 41.45 25.84 68.60 1.77 43.22 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.22 -8.26 5.59 99.48 0.56 -7.70 16 13 N -0.68 -25.52 6.04 -499.46 -3.02 -28.54 16 14 C 0.15 4.45 5.80 85.56 0.50 4.94 16 15 C 0.27 8.37 7.79 88.39 0.69 9.06 16 16 N -0.49 -16.93 11.34 -296.27 -3.36 -20.29 16 17 C -0.01 -0.25 7.24 39.32 0.28 0.04 16 18 C -0.02 -0.43 9.43 22.46 0.21 -0.22 16 19 C -0.18 -3.29 5.45 -19.88 -0.11 -3.40 16 20 C 0.52 8.84 3.36 71.24 0.24 9.08 16 21 F -0.18 -3.06 17.30 44.97 0.78 -2.28 16 22 F -0.17 -2.57 16.44 44.97 0.74 -1.83 16 23 F -0.18 -3.58 16.44 44.97 0.74 -2.84 16 24 C -0.04 -0.57 9.38 22.31 0.21 -0.37 16 25 C -0.08 -1.17 10.06 22.30 0.22 -0.94 16 26 C 0.02 0.44 7.43 22.88 0.17 0.61 16 27 O -0.21 -5.66 10.77 -10.04 -0.11 -5.76 16 28 H 0.06 1.43 6.72 -2.39 -0.02 1.41 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 2.03 8.04 -2.39 -0.02 2.02 16 32 H 0.05 2.04 4.99 -2.39 -0.01 2.03 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 34 H 0.34 11.65 7.75 -89.70 -0.69 10.95 16 35 H 0.11 3.48 8.02 -2.38 -0.02 3.46 16 36 H 0.09 2.12 6.79 -2.39 -0.02 2.11 16 37 H 0.15 3.36 7.59 -2.91 -0.02 3.33 16 38 H 0.19 1.05 7.58 -2.91 -0.02 1.03 16 39 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -70.78 338.17 2.09 -68.69 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.28 Total: 16.65 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 3.97 Total: -8.34 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -6.07 Total: -107.50 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.11 Total: -5.76 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 2.26 Total: -6.96 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 1.77 Total: 43.22 kcal Total: -70.78 2.09 -68.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565169697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.708 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.63 seconds