Wall clock time and date at job start Tue Mar 31 2020 14:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31986 * 119.58804 * 2 1 4 4 C 1.31947 * 121.86436 * 179.72338 * 3 2 1 5 5 C 1.37995 * 120.81842 * 0.58501 * 4 3 2 6 6 N 1.47999 * 120.45099 * 179.69895 * 5 4 3 7 7 O 1.21803 * 120.00199 * 359.73134 * 6 5 4 8 8 O 1.21799 * 120.00089 * 179.44612 * 6 5 4 9 9 C 1.39237 * 119.09144 * 359.43160 * 5 4 3 10 10 O 1.35745 * 120.84743 * 180.25078 * 9 5 4 11 11 C 1.42898 * 116.99727 * 89.99858 * 10 9 5 12 12 C 1.50701 * 109.47010 * 180.02562 * 11 10 9 13 13 C 1.38641 * 119.74776 * 269.73208 * 12 11 10 14 14 C 1.37616 * 120.24717 * 179.72360 * 13 12 11 15 15 C 1.40722 * 119.74412 * 0.56366 * 14 13 12 16 16 C 1.41393 * 120.24230 * 179.68709 * 15 14 13 17 17 H 1.08007 * 119.99713 * 204.40532 * 16 15 14 18 18 C 1.39942 * 120.00212 * 24.40332 * 16 15 14 19 19 N 1.30825 * 119.99879 * 17.85259 * 18 16 15 20 20 Si 1.86797 * 120.00134 * 197.84513 * 18 16 15 21 21 H 1.48507 * 109.46939 * 60.00149 * 20 18 16 22 22 H 1.48500 * 109.47337 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47169 * 300.00591 * 20 18 16 24 24 C 1.40718 * 119.51108 * 359.70593 * 15 14 13 25 25 C 1.37620 * 119.74520 * 0.02562 * 24 15 14 26 26 C 1.37943 * 119.59221 * 180.02562 * 2 1 3 27 27 C 1.50705 * 120.44896 * 359.96004 * 26 2 1 28 28 H 1.09000 * 109.47337 * 269.97883 * 1 2 3 29 29 H 1.09000 * 109.46776 * 29.98425 * 1 2 3 30 30 H 1.09003 * 109.46726 * 149.97772 * 1 2 3 31 31 H 1.08000 * 119.58997 * 180.31122 * 4 3 2 32 32 H 1.09003 * 109.47291 * 300.00067 * 11 10 9 33 33 H 1.09000 * 109.47259 * 60.00096 * 11 10 9 34 34 H 1.08000 * 119.87130 * 359.97018 * 13 12 11 35 35 H 1.08002 * 120.12885 * 180.27189 * 14 13 12 36 36 H 0.97000 * 119.99650 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.12364 * 179.97438 * 24 15 14 38 38 H 1.07993 * 119.87678 * 179.97438 * 25 24 15 39 39 H 1.09002 * 109.47156 * 270.02085 * 27 26 2 40 40 H 1.08999 * 109.47247 * 30.01794 * 27 26 2 41 41 H 1.09002 * 109.47079 * 150.02179 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1477 0.0000 4 6 3.4771 1.2002 0.0054 5 6 4.2307 0.0441 -0.0008 6 7 5.7091 0.1124 -0.0013 7 8 6.2688 1.1942 -0.0013 8 8 6.3661 -0.9131 0.0034 9 6 3.5810 -1.1874 -0.0008 10 8 4.2871 -2.3468 -0.0017 11 6 4.6253 -2.9013 1.2712 12 6 5.4028 -4.1769 1.0728 13 6 4.7303 -5.3863 0.9881 14 6 5.4296 -6.5567 0.8013 15 6 6.8334 -6.5241 0.7082 16 6 7.5629 -7.7210 0.5229 17 1 8.5953 -7.7781 0.8352 18 6 6.9473 -8.8318 -0.0649 19 7 5.8441 -8.6810 -0.7517 20 14 7.7009 -10.5298 0.1308 21 1 7.7680 -10.8783 1.5729 22 1 6.8630 -11.5283 -0.5806 23 1 9.0703 -10.5328 -0.4434 24 6 7.5057 -5.2914 0.8013 25 6 6.7855 -4.1328 0.9825 26 6 2.1882 -1.1995 -0.0005 27 6 1.4356 -2.5052 -0.0002 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 3.9727 2.1597 0.0103 32 1 5.2335 -2.1884 1.8280 33 1 3.7133 -3.1142 1.8287 34 1 3.6533 -5.4094 1.0649 35 1 4.9035 -7.4973 0.7311 36 1 5.4176 -9.4509 -1.1595 37 1 8.5829 -5.2549 0.7316 38 1 7.2994 -3.1857 1.0546 39 1 1.2545 -2.8199 1.0275 40 1 0.4830 -2.3756 -0.5137 41 1 2.0251 -3.2645 -0.5142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582014385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:38 Heat of formation + Delta-G solvation = 9.276804 kcal Electronic energy + Delta-G solvation = -27255.716292 eV Core-core repulsion = 23297.025177 eV Total energy + Delta-G solvation = -3958.691115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.22144 -40.87335 -38.63215 -37.33325 -36.29423 -34.49452 -33.98244 -32.71595 -30.65697 -29.55375 -29.33013 -27.81475 -26.89599 -25.64753 -23.96852 -22.73494 -21.99435 -21.05401 -20.13845 -19.05148 -18.84689 -17.62191 -17.47408 -17.42413 -17.32802 -15.89125 -15.38431 -15.22906 -14.87167 -14.45783 -14.16777 -13.97738 -13.49867 -13.31523 -13.26996 -13.00560 -12.84641 -12.48416 -12.43851 -12.01185 -11.95577 -11.70460 -11.42635 -11.24096 -11.14715 -11.04237 -10.93959 -10.76456 -10.50020 -10.24078 -10.01921 -9.96092 -9.70363 -9.44548 -9.43951 -9.20921 -7.54925 -7.42074 -6.87276 -4.45885 -0.34959 0.46918 1.24532 1.40009 2.50910 2.92149 3.00962 3.03585 3.05731 3.10849 3.50430 3.65006 3.85132 4.03405 4.11092 4.37405 4.55142 4.75571 4.93742 4.99908 5.09509 5.17286 5.36350 5.43933 5.46562 5.51415 5.63402 5.66423 5.72774 5.93648 6.04293 6.26334 6.37203 6.46832 6.89906 6.97729 7.20537 7.20721 7.27805 7.31998 7.54178 7.77347 7.78124 7.96799 8.03178 8.21386 8.54174 8.79001 8.87795 10.06136 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.002975 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.016790 B = 9411.038712 C =10626.941906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.179 3.821 3 N -0.483 5.483 4 C 0.183 3.817 5 C -0.138 4.138 6 N 0.034 4.966 7 O -0.181 6.181 8 O -0.116 6.116 9 C 0.225 3.775 10 O -0.310 6.310 11 C 0.148 3.852 12 C -0.234 4.234 13 C -0.075 4.075 14 C -0.173 4.173 15 C 0.120 3.880 16 C -0.454 4.454 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.784 5.784 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.231 4.231 25 C -0.050 4.050 26 C -0.166 4.166 27 C -0.112 4.112 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.184 0.816 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.694 12.106 2.078 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.044 3.956 3 N -0.194 5.194 4 C 0.023 3.977 5 C -0.225 4.225 6 N 0.554 4.446 7 O -0.389 6.389 8 O -0.340 6.340 9 C 0.171 3.829 10 O -0.227 6.227 11 C 0.077 3.923 12 C -0.235 4.235 13 C -0.094 4.094 14 C -0.192 4.192 15 C 0.117 3.883 16 C -0.483 4.483 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.409 5.409 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.251 4.251 25 C -0.069 4.069 26 C -0.169 4.169 27 C -0.169 4.169 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.201 0.799 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.000 12.635 1.778 18.216 hybrid contribution 1.232 -1.324 -0.030 1.809 sum -11.768 11.311 1.748 16.416 Atomic orbital electron populations 1.20946 0.87223 1.04644 1.04143 1.21575 0.97995 0.87049 0.89000 1.67963 1.07312 1.28526 1.15598 1.22709 0.88997 0.97277 0.88736 1.22951 0.81898 0.97538 1.20159 1.43221 1.02509 1.00760 0.98107 1.94502 1.72400 1.17054 1.54960 1.94699 1.64266 1.24003 1.51080 1.18903 0.90054 0.86102 0.87881 1.86331 1.70996 1.32570 1.32805 1.21528 0.96833 0.93637 0.80333 1.18517 0.93104 0.90779 1.21147 1.20488 0.96947 0.92767 0.99189 1.21256 0.94663 0.96825 1.06499 1.17697 0.92202 0.91937 0.86420 1.19681 0.99013 0.95397 1.34200 0.90151 1.25974 0.94412 1.01441 0.92573 1.69826 1.16326 1.32920 1.21786 0.86328 0.79991 0.80499 0.79739 1.18704 1.20252 1.18844 1.20999 0.98077 0.92407 1.13572 1.20491 0.92936 0.96947 0.96479 1.21209 0.92117 0.98562 1.04985 1.20806 0.99909 0.92653 1.03544 0.89093 0.89542 0.89276 0.79909 0.93461 0.93452 0.89568 0.86334 0.90610 0.88655 0.88421 0.90185 0.90117 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.77 36.01 0.35 -0.36 16 2 C 0.18 1.84 6.78 -82.63 -0.56 1.28 16 3 N -0.48 -5.53 10.27 -9.55 -0.10 -5.62 16 4 C 0.18 2.20 10.71 -17.59 -0.19 2.02 16 5 C -0.14 -2.04 6.89 -79.67 -0.55 -2.59 16 6 N 0.03 0.59 4.45 34.10 0.15 0.74 16 7 O -0.18 -2.96 18.48 -29.46 -0.54 -3.51 16 8 O -0.12 -2.25 16.08 -36.32 -0.58 -2.83 16 9 C 0.22 3.39 5.74 -38.82 -0.22 3.16 16 10 O -0.31 -5.59 7.71 -40.47 -0.31 -5.90 16 11 C 0.15 2.64 5.57 36.01 0.20 2.84 16 12 C -0.23 -5.04 5.53 -104.33 -0.58 -5.62 16 13 C -0.08 -1.68 9.67 -39.66 -0.38 -2.07 16 14 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 15 C 0.12 3.13 5.58 -106.82 -0.60 2.54 16 16 C -0.45 -11.73 9.05 -37.74 -0.34 -12.07 16 17 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.78 -19.63 10.95 55.55 0.61 -19.02 16 20 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 25 C -0.05 -1.14 9.67 -39.66 -0.38 -1.52 16 26 C -0.17 -1.96 5.91 -104.34 -0.62 -2.58 16 27 C -0.11 -1.10 9.42 36.01 0.34 -0.76 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.43 5.94 -51.93 -0.31 0.12 16 31 H 0.18 1.78 7.62 -52.49 -0.40 1.38 16 32 H 0.05 0.83 7.47 -51.93 -0.39 0.44 16 33 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 36 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 38 H 0.10 2.07 7.86 -52.49 -0.41 1.66 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.56 5.95 -51.93 -0.31 0.25 16 41 H 0.09 1.05 7.62 -51.93 -0.40 0.66 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -28.93 356.20 -9.39 -38.32 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.62 Total: 4.15 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -4.33 Total: -24.71 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.66 Total: -23.91 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.44 Total: -12.24 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.93 -9.39 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582014385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.601 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds