Wall clock time and date at job start Tue Mar 31 2020 14:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31986 * 119.58804 * 2 1 4 4 C 1.31947 * 121.86436 * 179.72338 * 3 2 1 5 5 C 1.37995 * 120.81842 * 0.58501 * 4 3 2 6 6 N 1.47999 * 120.45099 * 179.69895 * 5 4 3 7 7 O 1.21803 * 120.00199 * 359.73134 * 6 5 4 8 8 O 1.21799 * 120.00089 * 179.44612 * 6 5 4 9 9 C 1.39237 * 119.09144 * 359.43160 * 5 4 3 10 10 O 1.35745 * 120.84743 * 180.25078 * 9 5 4 11 11 C 1.42898 * 116.99727 * 89.99858 * 10 9 5 12 12 C 1.50701 * 109.47010 * 180.02562 * 11 10 9 13 13 C 1.38641 * 119.74776 * 269.73208 * 12 11 10 14 14 C 1.37616 * 120.24717 * 179.72360 * 13 12 11 15 15 C 1.40722 * 119.74412 * 0.56366 * 14 13 12 16 16 C 1.41393 * 120.24230 * 179.68709 * 15 14 13 17 17 H 1.08007 * 119.99713 * 204.40532 * 16 15 14 18 18 C 1.39942 * 120.00212 * 24.40332 * 16 15 14 19 19 N 1.30825 * 119.99879 * 17.85259 * 18 16 15 20 20 Si 1.86797 * 120.00134 * 197.84513 * 18 16 15 21 21 H 1.48507 * 109.46939 * 60.00149 * 20 18 16 22 22 H 1.48500 * 109.47337 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47169 * 300.00591 * 20 18 16 24 24 C 1.40718 * 119.51108 * 359.70593 * 15 14 13 25 25 C 1.37620 * 119.74520 * 0.02562 * 24 15 14 26 26 C 1.37943 * 119.59221 * 180.02562 * 2 1 3 27 27 C 1.50705 * 120.44896 * 359.96004 * 26 2 1 28 28 H 1.09000 * 109.47337 * 269.97883 * 1 2 3 29 29 H 1.09000 * 109.46776 * 29.98425 * 1 2 3 30 30 H 1.09003 * 109.46726 * 149.97772 * 1 2 3 31 31 H 1.08000 * 119.58997 * 180.31122 * 4 3 2 32 32 H 1.09003 * 109.47291 * 300.00067 * 11 10 9 33 33 H 1.09000 * 109.47259 * 60.00096 * 11 10 9 34 34 H 1.08000 * 119.87130 * 359.97018 * 13 12 11 35 35 H 1.08002 * 120.12885 * 180.27189 * 14 13 12 36 36 H 0.97000 * 119.99650 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.12364 * 179.97438 * 24 15 14 38 38 H 1.07993 * 119.87678 * 179.97438 * 25 24 15 39 39 H 1.09002 * 109.47156 * 270.02085 * 27 26 2 40 40 H 1.08999 * 109.47247 * 30.01794 * 27 26 2 41 41 H 1.09002 * 109.47079 * 150.02179 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1477 0.0000 4 6 3.4771 1.2002 0.0054 5 6 4.2307 0.0441 -0.0008 6 7 5.7091 0.1124 -0.0013 7 8 6.2688 1.1942 -0.0013 8 8 6.3661 -0.9131 0.0034 9 6 3.5810 -1.1874 -0.0008 10 8 4.2871 -2.3468 -0.0017 11 6 4.6253 -2.9013 1.2712 12 6 5.4028 -4.1769 1.0728 13 6 4.7303 -5.3863 0.9881 14 6 5.4296 -6.5567 0.8013 15 6 6.8334 -6.5241 0.7082 16 6 7.5629 -7.7210 0.5229 17 1 8.5953 -7.7781 0.8352 18 6 6.9473 -8.8318 -0.0649 19 7 5.8441 -8.6810 -0.7517 20 14 7.7009 -10.5298 0.1308 21 1 7.7680 -10.8783 1.5729 22 1 6.8630 -11.5283 -0.5806 23 1 9.0703 -10.5328 -0.4434 24 6 7.5057 -5.2914 0.8013 25 6 6.7855 -4.1328 0.9825 26 6 2.1882 -1.1995 -0.0005 27 6 1.4356 -2.5052 -0.0002 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 3.9727 2.1597 0.0103 32 1 5.2335 -2.1884 1.8280 33 1 3.7133 -3.1142 1.8287 34 1 3.6533 -5.4094 1.0649 35 1 4.9035 -7.4973 0.7311 36 1 5.4176 -9.4509 -1.1595 37 1 8.5829 -5.2549 0.7316 38 1 7.2994 -3.1857 1.0546 39 1 1.2545 -2.8199 1.0275 40 1 0.4830 -2.3756 -0.5137 41 1 2.0251 -3.2645 -0.5142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582014385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:35 Heat of formation + Delta-G solvation = -4.399476 kcal Electronic energy + Delta-G solvation = -27256.309340 eV Core-core repulsion = 23297.025177 eV Total energy + Delta-G solvation = -3959.284163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.42550 -41.94119 -40.02178 -38.99778 -37.59511 -35.76093 -35.36133 -33.86555 -32.34655 -31.19203 -30.34924 -29.13807 -28.19866 -26.69442 -25.63132 -23.77304 -23.11158 -22.85751 -21.91610 -20.22134 -20.04042 -19.25756 -18.73432 -18.70219 -18.48208 -17.39811 -16.95518 -16.28562 -15.97619 -15.85750 -15.67430 -15.00674 -14.88257 -14.69806 -14.18801 -14.01625 -13.91922 -13.82799 -13.53564 -13.49076 -13.39530 -12.87081 -12.76558 -12.72572 -12.62359 -12.56677 -12.38452 -12.28904 -12.10364 -11.55133 -11.38841 -11.23127 -11.17367 -11.09616 -10.98378 -10.32623 -9.41614 -9.30065 -8.68504 -6.39215 -1.47571 -0.52900 0.05581 0.23886 0.82051 1.14736 1.38209 1.47267 1.51280 1.96413 2.19398 2.28656 2.72844 2.84512 3.04635 3.14850 3.49625 3.71142 3.82359 4.01786 4.03326 4.10071 4.24188 4.37105 4.50229 4.52403 4.59624 4.66015 4.71821 4.75674 4.92473 5.00692 5.05265 5.12160 5.14771 5.33950 5.36091 5.42200 5.67386 5.87675 6.06128 6.09076 6.17365 6.28479 6.34526 6.43845 6.65069 6.89347 6.98408 8.27942 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.002975 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.016790 B = 9411.038712 C =10626.941906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.193 3.807 3 N -0.482 5.482 4 C 0.193 3.807 5 C -0.155 4.155 6 N 0.038 4.962 7 O -0.153 6.153 8 O -0.189 6.189 9 C 0.196 3.804 10 O -0.331 6.331 11 C 0.158 3.842 12 C -0.227 4.227 13 C -0.074 4.074 14 C -0.194 4.194 15 C 0.090 3.910 16 C -0.495 4.495 17 H 0.077 0.923 18 C 0.037 3.963 19 N -0.816 5.816 20 Si 0.984 3.016 21 H -0.259 1.259 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.251 4.251 25 C -0.057 4.057 26 C -0.162 4.162 27 C -0.113 4.113 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.206 0.794 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.291 0.709 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 13.545 2.359 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.058 3.942 3 N -0.193 5.193 4 C 0.033 3.967 5 C -0.242 4.242 6 N 0.552 4.448 7 O -0.372 6.372 8 O -0.396 6.396 9 C 0.143 3.857 10 O -0.248 6.248 11 C 0.086 3.914 12 C -0.228 4.228 13 C -0.092 4.092 14 C -0.214 4.214 15 C 0.087 3.913 16 C -0.524 4.524 17 H 0.095 0.905 18 C -0.179 4.179 19 N -0.442 5.442 20 Si 0.805 3.195 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.271 4.271 25 C -0.075 4.075 26 C -0.165 4.165 27 C -0.169 4.169 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.223 0.777 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.190 13.961 2.056 21.477 hybrid contribution 1.981 -1.349 -0.134 2.401 sum -14.209 12.612 1.922 19.095 Atomic orbital electron populations 1.21182 0.83716 1.06195 1.05865 1.22295 0.99999 0.85924 0.85972 1.68145 1.06676 1.28951 1.15539 1.23107 0.89202 0.97143 0.87201 1.23142 0.80119 0.98657 1.22327 1.43542 1.03631 1.00308 0.97299 1.94446 1.73288 1.16837 1.52676 1.94714 1.65402 1.24445 1.55079 1.19218 0.91260 0.85012 0.90221 1.86196 1.72005 1.34114 1.32455 1.21290 0.97511 0.91787 0.80801 1.18895 0.93021 0.92495 1.18412 1.20775 0.98445 0.92079 0.97918 1.21267 0.94530 0.97419 1.08166 1.18028 0.93102 0.92675 0.87451 1.19906 0.99343 0.96772 1.36377 0.90515 1.26798 0.94762 1.04909 0.91479 1.69867 1.17571 1.34358 1.22360 0.85221 0.79127 0.75408 0.79784 1.18307 1.18892 1.18543 1.21154 0.98388 0.92861 1.14648 1.20693 0.93879 0.96696 0.96279 1.21478 0.90670 1.00283 1.04047 1.20917 1.00660 0.90728 1.04631 0.86897 0.88511 0.87230 0.77736 0.93665 0.90693 0.86557 0.87493 0.89828 0.88654 0.87503 0.88679 0.86693 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.77 71.24 0.70 -0.12 16 2 C 0.19 3.20 6.78 42.47 0.29 3.49 16 3 N -0.48 -9.30 10.27 -184.12 -1.89 -11.20 16 4 C 0.19 4.16 10.71 84.62 0.91 5.07 16 5 C -0.15 -4.41 6.89 36.56 0.25 -4.15 16 6 N 0.04 1.29 4.45 -46.04 -0.21 1.08 16 7 O -0.15 -4.90 18.48 18.88 0.35 -4.55 16 8 O -0.19 -7.63 16.08 25.45 0.41 -7.22 16 9 C 0.20 5.69 5.74 22.76 0.13 5.82 16 10 O -0.33 -11.90 7.71 -70.11 -0.54 -12.44 16 11 C 0.16 5.57 5.57 71.24 0.40 5.97 16 12 C -0.23 -9.93 5.53 -19.67 -0.11 -10.04 16 13 C -0.07 -3.34 9.67 22.22 0.21 -3.12 16 14 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 15 C 0.09 4.95 5.58 -21.29 -0.12 4.83 16 16 C -0.50 -26.93 9.05 23.46 0.21 -26.72 16 17 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 18 C 0.04 1.83 5.14 85.26 0.44 2.27 16 19 N -0.82 -42.16 10.95 21.83 0.24 -41.92 16 20 Si 0.98 37.69 29.59 68.60 2.03 39.72 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 C -0.25 -13.00 9.80 22.73 0.22 -12.78 16 25 C -0.06 -2.71 9.67 22.22 0.21 -2.49 16 26 C -0.16 -3.36 5.91 -19.68 -0.12 -3.48 16 27 C -0.11 -1.82 9.42 71.24 0.67 -1.15 16 28 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.40 5.94 -2.39 -0.01 0.39 16 31 H 0.21 3.37 7.62 -2.91 -0.02 3.35 16 32 H 0.05 1.60 7.47 -2.39 -0.02 1.59 16 33 H 0.07 2.19 8.08 -2.39 -0.02 2.17 16 34 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 36 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 37 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.11 4.77 7.86 -2.91 -0.02 4.74 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.03 5.95 -2.39 -0.01 1.02 16 41 H 0.06 1.38 7.62 -2.39 -0.02 1.36 16 Total: -1.00 -67.35 356.20 5.96 -61.38 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 1.08 Total: 21.70 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 4.50 Total: -46.56 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -1.86 Total: -52.03 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.22 Total: -24.21 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -67.35 5.96 -61.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582014385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.982 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds