Wall clock time and date at job start Tue Mar 31 2020 16:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39133 * 125.96558 * 2 1 4 4 C 1.38869 * 132.70316 * 0.76221 * 3 2 1 5 5 C 1.38041 * 119.89448 * 179.60107 * 4 3 2 6 6 C 1.38447 * 120.25194 * 359.68779 * 5 4 3 7 7 C 1.38079 * 120.26798 * 0.02562 * 6 5 4 8 8 C 1.38733 * 119.92277 * 359.97438 * 7 6 5 9 9 N 1.39686 * 132.59689 * 180.02562 * 8 7 6 10 10 C 1.36888 * 143.72996 * 359.97438 * 9 8 7 11 11 S 1.76195 * 125.99812 * 359.97438 * 10 9 8 12 12 C 1.81402 * 102.99872 * 174.95978 * 11 10 9 13 13 C 1.52998 * 109.47043 * 184.99272 * 12 11 10 14 14 C 1.50701 * 115.55390 * 39.89002 * 13 12 11 15 15 H 1.07994 * 120.00023 * 264.74940 * 14 13 12 16 16 C 1.37874 * 119.99690 * 84.74321 * 14 13 12 17 17 N 1.31512 * 120.00028 * 184.84620 * 16 14 13 18 18 Si 1.86806 * 120.00182 * 4.85288 * 16 14 13 19 19 H 1.48496 * 109.47324 * 94.76070 * 18 16 14 20 20 H 1.48506 * 109.46777 * 214.75903 * 18 16 14 21 21 H 1.48500 * 109.46844 * 334.75784 * 18 16 14 22 22 C 1.52999 * 117.49940 * 254.18417 * 13 12 11 23 23 C 1.53000 * 117.49827 * 185.56143 * 13 12 11 24 24 N 1.31086 * 108.00203 * 179.97438 * 10 9 8 25 25 N 1.40071 * 108.03284 * 359.97438 * 24 10 9 26 26 C 1.31374 * 108.01960 * 0.02562 * 25 24 10 27 27 H 1.08997 * 109.46757 * 269.71083 * 1 2 3 28 28 H 1.09004 * 109.47230 * 149.71375 * 1 2 3 29 29 H 1.09001 * 109.46939 * 29.71201 * 1 2 3 30 30 H 1.08000 * 120.05465 * 359.28831 * 4 3 2 31 31 H 1.07998 * 119.87374 * 179.71719 * 5 4 3 32 32 H 1.07997 * 119.86111 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.03656 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47250 * 304.99419 * 12 11 10 35 35 H 1.09006 * 109.46984 * 64.99384 * 12 11 10 36 36 H 0.96999 * 120.00723 * 180.02562 * 17 16 14 37 37 H 1.09006 * 117.50005 * 359.97438 * 22 13 12 38 38 H 1.08999 * 117.50183 * 145.02567 * 22 13 12 39 39 H 1.09003 * 117.50120 * 214.97834 * 23 13 12 40 40 H 1.08997 * 117.49947 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2822 1.1261 0.0000 4 6 2.0094 2.4877 0.0136 5 6 3.0477 3.3973 0.0178 6 6 4.3604 2.9575 0.0151 7 6 4.6414 1.6056 0.0076 8 6 3.6050 0.6834 0.0033 9 7 3.5823 -0.7133 -0.0038 10 6 4.3741 -1.8299 -0.0101 11 16 6.1359 -1.8502 -0.0122 12 6 6.5239 -3.6162 0.1341 13 6 8.0370 -3.7963 0.2718 14 6 8.7357 -2.7830 1.1413 15 1 9.1935 -1.9126 0.6951 16 6 8.7904 -2.9672 2.5066 17 7 9.3156 -2.0381 3.2750 18 14 8.1188 -4.5367 3.2651 19 1 9.2232 -5.5138 3.4406 20 1 7.5154 -4.2290 4.5867 21 1 7.0837 -5.1150 2.3709 22 6 8.7984 -4.3298 -0.9433 23 6 8.5806 -5.2264 0.2771 24 7 3.5915 -2.8815 -0.0143 25 7 2.2641 -2.4341 -0.0100 26 6 2.2780 -1.1205 -0.0038 27 1 -0.3633 -0.0052 1.0276 28 1 -0.3634 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 0.9866 2.8344 0.0157 31 1 2.8351 4.4562 0.0238 32 1 5.1678 3.6747 0.0189 33 1 5.6669 1.2666 0.0060 34 1 6.0277 -4.0255 1.0141 35 1 6.1752 -4.1398 -0.7562 36 1 9.3544 -2.1677 4.2355 37 1 8.2213 -4.5529 -1.8408 38 1 9.8049 -3.9479 -1.1140 39 1 9.4439 -5.4344 0.9093 40 1 7.8603 -6.0390 0.1830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594891909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:06 Heat of formation + Delta-G solvation = 185.576683 kcal Electronic energy + Delta-G solvation = -24754.152393 eV Core-core repulsion = 21278.151836 eV Total energy + Delta-G solvation = -3476.000557 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -43.14359 -39.53814 -37.06864 -36.88699 -34.13282 -32.18421 -30.85625 -30.30566 -29.39739 -28.13771 -27.07460 -25.46622 -23.78831 -22.64856 -21.72735 -21.34349 -21.15360 -19.23309 -18.28950 -17.58874 -16.79712 -16.54699 -16.43793 -15.57140 -14.97256 -14.81954 -14.49930 -14.45398 -14.33414 -13.87322 -13.66002 -13.28724 -13.08965 -12.85357 -12.62744 -12.43526 -12.15687 -11.56522 -11.48703 -11.22860 -11.10095 -11.01503 -10.96377 -10.78002 -10.52327 -10.33107 -9.96031 -9.77277 -9.57702 -9.14665 -8.69618 -8.65413 -8.47405 -8.12554 -6.93903 -6.19203 -4.22672 0.81039 1.04671 1.38039 1.83046 2.23415 2.58347 2.74781 2.93211 3.26936 3.38198 3.43065 3.47141 3.93149 4.35715 4.37940 4.62282 4.69018 4.82578 4.93908 4.95150 5.00714 5.08260 5.10219 5.13507 5.23675 5.55676 5.57648 5.63489 5.76964 5.82130 6.05759 6.11539 6.12695 6.20880 6.29268 6.36272 6.42970 6.43226 6.63702 6.76543 6.88549 7.04600 7.10124 7.61268 8.13768 8.37656 8.82737 9.43837 10.91372 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.003880 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.280629 B = 7214.701839 C = 7883.456044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.503 5.503 3 C 0.138 3.862 4 C -0.126 4.126 5 C -0.087 4.087 6 C -0.123 4.123 7 C -0.069 4.069 8 C 0.074 3.926 9 N -0.448 5.448 10 C 0.208 3.792 11 S 0.058 5.942 12 C -0.063 4.063 13 C 0.007 3.993 14 C -0.488 4.488 15 H 0.084 0.916 16 C 0.090 3.910 17 N -0.885 5.885 18 Si 0.869 3.131 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.253 1.253 22 C -0.175 4.175 23 C -0.188 4.188 24 N -0.300 5.300 25 N -0.332 5.332 26 C 0.423 3.577 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.266 0.734 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.646 10.733 -7.339 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.209 5.209 3 C 0.035 3.965 4 C -0.148 4.148 5 C -0.107 4.107 6 C -0.143 4.143 7 C -0.090 4.090 8 C -0.026 4.026 9 N -0.144 5.144 10 C -0.169 4.169 11 S 0.289 5.711 12 C -0.213 4.213 13 C 0.004 3.996 14 C -0.528 4.528 15 H 0.102 0.898 16 C -0.115 4.115 17 N -0.520 5.520 18 Si 0.697 3.303 19 H -0.203 1.203 20 H -0.219 1.219 21 H -0.177 1.177 22 C -0.213 4.213 23 C -0.227 4.227 24 N -0.133 5.133 25 N -0.172 5.172 26 C 0.062 3.938 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.590 9.884 -7.240 19.052 hybrid contribution -0.914 -0.804 0.768 1.440 sum -15.504 9.080 -6.472 19.097 Atomic orbital electron populations 1.21844 0.73893 1.04507 1.03296 1.43090 1.05519 0.99448 1.72798 1.18104 0.86464 0.88857 1.03046 1.20020 1.00583 0.87683 1.06537 1.20953 0.91844 0.99425 0.98439 1.20945 0.97190 0.94225 1.01979 1.20501 0.98316 0.91680 0.98543 1.17953 0.94603 0.80554 1.09512 1.44495 1.06644 1.05021 1.58231 1.27333 1.02713 0.82494 1.04392 1.86312 0.81295 1.13883 1.89619 1.23553 1.01377 0.91891 1.04441 1.19068 0.87720 0.94013 0.98801 1.20168 1.35461 1.06654 0.90472 0.89807 1.24904 0.93662 0.96061 0.96869 1.69877 1.43928 1.33159 1.05069 0.86984 0.80282 0.84259 0.78807 1.20327 1.21861 1.17718 1.22936 1.01868 1.05017 0.91431 1.23021 1.03145 0.94170 1.02372 1.78358 0.93348 1.18666 1.22899 1.78199 1.10605 0.99108 1.29330 1.22088 0.79996 0.89889 1.01811 0.91154 0.89402 0.89530 0.84863 0.84519 0.84291 0.83997 0.89490 0.90685 0.92371 0.90608 0.89148 0.89088 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.86 11.14 59.85 0.67 1.52 16 2 N -0.50 -6.72 3.28 -122.21 -0.40 -7.12 16 3 C 0.14 1.76 6.81 -83.84 -0.57 1.19 16 4 C -0.13 -1.12 10.00 -39.42 -0.39 -1.51 16 5 C -0.09 -0.69 10.03 -39.58 -0.40 -1.08 16 6 C -0.12 -1.18 10.03 -39.56 -0.40 -1.58 16 7 C -0.07 -0.92 10.07 -39.46 -0.40 -1.31 16 8 C 0.07 1.15 7.22 -83.63 -0.60 0.54 16 9 N -0.45 -8.39 3.48 -61.32 -0.21 -8.61 16 10 C 0.21 4.31 8.42 -88.18 -0.74 3.57 16 11 S 0.06 1.20 21.01 -107.50 -2.26 -1.06 16 12 C -0.06 -1.35 5.51 37.16 0.20 -1.15 16 13 C 0.01 0.15 1.08 -155.66 -0.17 -0.02 16 14 C -0.49 -12.76 8.14 -34.44 -0.28 -13.04 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 17 N -0.88 -25.75 13.96 55.43 0.77 -24.97 16 18 Si 0.87 21.24 25.19 -169.99 -4.28 16.96 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.25 -5.93 5.24 56.52 0.30 -5.63 16 22 C -0.18 -3.39 9.88 -26.73 -0.26 -3.66 16 23 C -0.19 -3.83 7.33 -26.73 -0.20 -4.03 16 24 N -0.30 -6.58 12.29 30.71 0.38 -6.20 16 25 N -0.33 -6.78 12.73 30.35 0.39 -6.40 16 26 C 0.42 7.59 9.20 -318.63 -2.93 4.66 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.14 1.96 8.06 -52.48 -0.42 1.53 16 34 H 0.09 1.97 6.65 -51.92 -0.35 1.63 16 35 H 0.07 1.47 7.95 -51.92 -0.41 1.05 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 38 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 39 H 0.09 1.92 7.13 -51.93 -0.37 1.55 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -33.07 350.86 -11.92 -44.98 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.02 Total: 0.66 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -6.57 Total: -13.54 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.92 Total: -53.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.28 Total: 16.96 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.26 Total: -1.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.07 -11.92 -44.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594891909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.559 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds