Wall clock time and date at job start Tue Mar 31 2020 16:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39133 * 125.96558 * 2 1 4 4 C 1.38869 * 132.70316 * 0.76221 * 3 2 1 5 5 C 1.38041 * 119.89448 * 179.60107 * 4 3 2 6 6 C 1.38447 * 120.25194 * 359.68779 * 5 4 3 7 7 C 1.38079 * 120.26798 * 0.02562 * 6 5 4 8 8 C 1.38733 * 119.92277 * 359.97438 * 7 6 5 9 9 N 1.39686 * 132.59689 * 180.02562 * 8 7 6 10 10 C 1.36888 * 143.72996 * 359.97438 * 9 8 7 11 11 S 1.76195 * 125.99812 * 359.97438 * 10 9 8 12 12 C 1.81402 * 102.99872 * 174.95978 * 11 10 9 13 13 C 1.52998 * 109.47043 * 184.99272 * 12 11 10 14 14 C 1.50701 * 115.55390 * 39.89002 * 13 12 11 15 15 H 1.07994 * 120.00023 * 264.74940 * 14 13 12 16 16 C 1.37874 * 119.99690 * 84.74321 * 14 13 12 17 17 N 1.31512 * 120.00028 * 184.84620 * 16 14 13 18 18 Si 1.86806 * 120.00182 * 4.85288 * 16 14 13 19 19 H 1.48496 * 109.47324 * 94.76070 * 18 16 14 20 20 H 1.48506 * 109.46777 * 214.75903 * 18 16 14 21 21 H 1.48500 * 109.46844 * 334.75784 * 18 16 14 22 22 C 1.52999 * 117.49940 * 254.18417 * 13 12 11 23 23 C 1.53000 * 117.49827 * 185.56143 * 13 12 11 24 24 N 1.31086 * 108.00203 * 179.97438 * 10 9 8 25 25 N 1.40071 * 108.03284 * 359.97438 * 24 10 9 26 26 C 1.31374 * 108.01960 * 0.02562 * 25 24 10 27 27 H 1.08997 * 109.46757 * 269.71083 * 1 2 3 28 28 H 1.09004 * 109.47230 * 149.71375 * 1 2 3 29 29 H 1.09001 * 109.46939 * 29.71201 * 1 2 3 30 30 H 1.08000 * 120.05465 * 359.28831 * 4 3 2 31 31 H 1.07998 * 119.87374 * 179.71719 * 5 4 3 32 32 H 1.07997 * 119.86111 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.03656 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47250 * 304.99419 * 12 11 10 35 35 H 1.09006 * 109.46984 * 64.99384 * 12 11 10 36 36 H 0.96999 * 120.00723 * 180.02562 * 17 16 14 37 37 H 1.09006 * 117.50005 * 359.97438 * 22 13 12 38 38 H 1.08999 * 117.50183 * 145.02567 * 22 13 12 39 39 H 1.09003 * 117.50120 * 214.97834 * 23 13 12 40 40 H 1.08997 * 117.49947 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2822 1.1261 0.0000 4 6 2.0094 2.4877 0.0136 5 6 3.0477 3.3973 0.0178 6 6 4.3604 2.9575 0.0151 7 6 4.6414 1.6056 0.0076 8 6 3.6050 0.6834 0.0033 9 7 3.5823 -0.7133 -0.0038 10 6 4.3741 -1.8299 -0.0101 11 16 6.1359 -1.8502 -0.0122 12 6 6.5239 -3.6162 0.1341 13 6 8.0370 -3.7963 0.2718 14 6 8.7357 -2.7830 1.1413 15 1 9.1935 -1.9126 0.6951 16 6 8.7904 -2.9672 2.5066 17 7 9.3156 -2.0381 3.2750 18 14 8.1188 -4.5367 3.2651 19 1 9.2232 -5.5138 3.4406 20 1 7.5154 -4.2290 4.5867 21 1 7.0837 -5.1150 2.3709 22 6 8.7984 -4.3298 -0.9433 23 6 8.5806 -5.2264 0.2771 24 7 3.5915 -2.8815 -0.0143 25 7 2.2641 -2.4341 -0.0100 26 6 2.2780 -1.1205 -0.0038 27 1 -0.3633 -0.0052 1.0276 28 1 -0.3634 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 0.9866 2.8344 0.0157 31 1 2.8351 4.4562 0.0238 32 1 5.1678 3.6747 0.0189 33 1 5.6669 1.2666 0.0060 34 1 6.0277 -4.0255 1.0141 35 1 6.1752 -4.1398 -0.7562 36 1 9.3544 -2.1677 4.2355 37 1 8.2213 -4.5529 -1.8408 38 1 9.8049 -3.9479 -1.1140 39 1 9.4439 -5.4344 0.9093 40 1 7.8603 -6.0390 0.1830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594891909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:03 Heat of formation + Delta-G solvation = 169.529089 kcal Electronic energy + Delta-G solvation = -24754.848269 eV Core-core repulsion = 21278.151836 eV Total energy + Delta-G solvation = -3476.696432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.37844 -40.64103 -38.79264 -37.83031 -35.27478 -34.26338 -31.97550 -31.37348 -30.44192 -29.77514 -28.02745 -27.47033 -24.94754 -23.68192 -23.33438 -22.57669 -22.27984 -20.98077 -19.53191 -18.59370 -18.31535 -18.03293 -17.70418 -16.98428 -16.67515 -15.86082 -15.55122 -15.47219 -15.42399 -15.22921 -15.14094 -14.98091 -14.63821 -14.10020 -13.85090 -13.44572 -13.27895 -13.05621 -12.78648 -12.65855 -12.53656 -12.49284 -12.20872 -12.15910 -12.11755 -12.07947 -11.73822 -11.40509 -11.02321 -10.93517 -10.62153 -10.25179 -9.66727 -9.27649 -8.43778 -8.30969 -6.35871 -0.18361 -0.11016 0.16584 0.67614 0.90244 1.19568 1.28268 1.30739 1.37668 1.47622 1.59477 2.34744 2.62596 2.88093 3.04589 3.15469 3.43947 3.69411 3.72546 3.92875 4.01527 4.14131 4.20735 4.23517 4.30458 4.36713 4.39300 4.46517 4.50091 4.64357 4.66489 4.70940 4.86022 4.90557 5.00618 5.20413 5.22289 5.32896 5.42923 5.47079 5.57527 5.65214 5.77648 5.98891 6.27296 6.70181 6.72031 7.33091 8.83356 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.003880 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.280629 B = 7214.701839 C = 7883.456044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.493 5.493 3 C 0.128 3.872 4 C -0.108 4.108 5 C -0.067 4.067 6 C -0.114 4.114 7 C -0.095 4.095 8 C 0.021 3.979 9 N -0.455 5.455 10 C 0.194 3.806 11 S 0.040 5.960 12 C -0.053 4.053 13 C -0.024 4.024 14 C -0.476 4.476 15 H 0.046 0.954 16 C 0.042 3.958 17 N -0.933 5.933 18 Si 0.915 3.085 19 H -0.264 1.264 20 H -0.304 1.304 21 H -0.237 1.237 22 C -0.153 4.153 23 C -0.181 4.181 24 N -0.326 5.326 25 N -0.367 5.367 26 C 0.419 3.581 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.179 0.821 31 H 0.186 0.814 32 H 0.165 0.835 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.265 0.735 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.311 12.700 -8.460 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.199 5.199 3 C 0.026 3.974 4 C -0.129 4.129 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.116 4.116 8 C -0.078 4.078 9 N -0.150 5.150 10 C -0.185 4.185 11 S 0.271 5.729 12 C -0.203 4.203 13 C -0.027 4.027 14 C -0.515 4.515 15 H 0.064 0.936 16 C -0.158 4.158 17 N -0.572 5.572 18 Si 0.740 3.260 19 H -0.190 1.190 20 H -0.231 1.231 21 H -0.160 1.160 22 C -0.190 4.190 23 C -0.220 4.220 24 N -0.159 5.159 25 N -0.210 5.210 26 C 0.058 3.942 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.146 0.854 30 H 0.196 0.804 31 H 0.203 0.797 32 H 0.183 0.817 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.272 11.887 -8.383 22.581 hybrid contribution -0.188 -1.087 1.032 1.510 sum -17.460 10.800 -7.351 21.807 Atomic orbital electron populations 1.22299 0.70841 1.06473 1.04826 1.43583 1.06895 0.97935 1.71500 1.18552 0.85014 0.90081 1.03753 1.20644 1.03195 0.85480 1.03613 1.21566 0.90363 1.01644 0.95017 1.21369 0.99401 0.92719 0.99890 1.20602 0.97074 0.93315 1.00635 1.18537 0.96956 0.79238 1.13039 1.44616 1.06564 1.06194 1.57591 1.26997 1.02217 0.83561 1.05716 1.86236 0.82292 1.14093 1.90314 1.23421 1.00275 0.92123 1.04432 1.18966 0.88168 0.94646 1.00900 1.20210 1.34255 1.06254 0.90755 0.93566 1.25552 0.94266 0.98482 0.97502 1.69997 1.46698 1.35240 1.05225 0.86247 0.80427 0.81633 0.77662 1.18958 1.23117 1.15989 1.23001 1.01587 1.02816 0.91616 1.23076 1.03019 0.93388 1.02524 1.78197 0.94375 1.19927 1.23437 1.78029 1.09823 1.00804 1.32308 1.22472 0.80865 0.90314 1.00536 0.89781 0.89713 0.85366 0.80364 0.79650 0.81715 0.86285 0.91259 0.88807 0.92564 0.87651 0.89275 0.89816 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 11.14 127.77 1.42 2.67 16 2 N -0.49 -12.41 3.28 -540.55 -1.78 -14.18 16 3 C 0.13 2.97 6.81 38.44 0.26 3.23 16 4 C -0.11 -1.35 10.00 22.37 0.22 -1.13 16 5 C -0.07 -0.69 10.03 22.27 0.22 -0.47 16 6 C -0.11 -1.86 10.03 22.28 0.22 -1.64 16 7 C -0.10 -2.55 10.07 22.35 0.22 -2.32 16 8 C 0.02 0.65 7.22 38.31 0.28 0.93 16 9 N -0.45 -17.69 3.48 -347.92 -1.21 -18.90 16 10 C 0.19 8.46 8.42 179.49 1.51 9.97 16 11 S 0.04 1.77 21.01 -56.49 -1.19 0.58 16 12 C -0.05 -2.30 5.51 71.98 0.40 -1.90 16 13 C -0.02 -1.08 1.08 -52.93 -0.06 -1.13 16 14 C -0.48 -25.76 8.14 25.60 0.21 -25.55 16 15 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 16 C 0.04 2.36 5.47 84.65 0.46 2.83 16 17 N -0.93 -56.81 13.96 21.45 0.30 -56.51 16 18 Si 0.91 44.45 25.19 68.60 1.73 46.18 16 19 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 21 H -0.24 -10.79 5.24 99.48 0.52 -10.27 16 22 C -0.15 -5.70 9.88 30.59 0.30 -5.39 16 23 C -0.18 -7.07 7.33 30.59 0.22 -6.85 16 24 N -0.33 -14.91 12.29 -56.75 -0.70 -15.61 16 25 N -0.37 -15.54 12.73 -57.90 -0.74 -16.28 16 26 C 0.42 15.33 9.20 260.03 2.39 17.73 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 31 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 34 H 0.07 3.20 6.65 -2.39 -0.02 3.18 16 35 H 0.09 3.63 7.95 -2.39 -0.02 3.62 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.11 3.32 8.08 -2.38 -0.02 3.30 16 38 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.08 3.41 7.13 -2.39 -0.02 3.39 16 40 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -79.13 350.86 5.60 -73.54 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.88 Total: 10.22 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 8.30 Total: -9.04 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -4.12 Total: -121.48 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.73 Total: 46.18 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.19 Total: 0.58 kcal Total: -79.13 5.60 -73.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594891909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.064 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds