Wall clock time and date at job start Tue Mar 31 2020 16:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39897 * 119.99800 * 179.97438 * 14 13 2 16 16 C 1.39320 * 119.86750 * 0.02562 * 15 14 13 17 17 C 1.37827 * 120.40262 * 180.02562 * 16 15 14 18 18 C 1.38691 * 119.97661 * 359.97438 * 17 16 15 19 19 O 1.35216 * 133.84397 * 179.97438 * 18 17 16 20 20 C 1.34202 * 108.15519 * 179.97438 * 19 18 17 21 21 C 1.50699 * 124.85076 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47371 * 270.02879 * 21 20 19 23 23 F 1.39902 * 109.47356 * 30.02998 * 21 20 19 24 24 F 1.39905 * 109.47291 * 150.02708 * 21 20 19 25 25 N 1.29911 * 110.29827 * 0.02562 * 20 19 18 26 26 C 1.36078 * 108.81021 * 359.97438 * 25 20 19 27 27 C 1.38304 * 119.86913 * 179.72662 * 15 14 13 28 28 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 29 29 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 30 30 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 32 32 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 33 33 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 34 34 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 35 35 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 36 36 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 37 37 H 1.08002 * 119.79880 * 359.97438 * 16 15 14 38 38 H 1.07999 * 120.01328 * 180.02562 * 17 16 15 39 39 H 1.08004 * 120.16625 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0095 -0.4305 -3.7123 16 6 2.7332 -1.6142 -3.8391 17 6 3.0913 -2.0828 -5.0849 18 6 2.7304 -1.3748 -6.2216 19 8 2.9259 -1.5663 -7.5457 20 6 2.3488 -0.5497 -8.2050 21 6 2.3415 -0.3887 -9.7033 22 9 3.4656 0.3440 -10.0991 23 9 2.3702 -1.6499 -10.3081 24 9 1.1817 0.2894 -10.0939 25 7 1.7982 0.2762 -7.3669 26 6 2.0005 -0.1826 -6.1018 27 6 1.6374 0.2829 -4.8372 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2953 33 1 2.9286 -2.0221 3.0617 34 1 3.1263 -0.7997 -1.2054 35 1 1.6053 -1.7200 -1.2950 36 1 1.1490 0.8592 -2.3518 37 1 3.0161 -2.1676 -2.9559 38 1 3.6519 -3.0013 -5.1759 39 1 1.0726 1.1980 -4.7373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602589336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:09 Heat of formation + Delta-G solvation = -120.075455 kcal Electronic energy + Delta-G solvation = -26470.217639 eV Core-core repulsion = 21964.060649 eV Total energy + Delta-G solvation = -4506.156990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.83360 -48.35427 -48.33125 -43.67053 -39.17921 -36.70210 -35.31654 -34.11311 -32.26113 -30.98727 -29.69990 -27.25931 -26.64524 -25.94307 -23.37360 -23.26271 -22.29992 -22.13365 -19.83931 -19.28729 -19.27371 -19.00725 -18.24704 -17.41334 -17.04291 -16.84153 -16.15046 -15.14335 -15.11797 -14.91207 -14.81436 -14.71440 -14.52784 -14.43736 -14.42697 -14.09022 -13.82813 -13.47875 -13.40983 -13.27691 -13.06684 -12.49243 -12.10155 -12.00395 -11.87691 -11.68318 -11.24423 -10.97824 -10.85837 -10.55281 -10.31035 -10.18240 -9.97238 -9.74448 -8.99683 -8.63589 -8.41095 -7.59359 -6.43873 -4.13773 0.05557 1.10156 1.11424 1.79555 2.23467 2.71518 3.31768 3.37681 3.38450 3.41162 3.56689 3.57121 3.61842 4.14331 4.41020 4.47295 4.66975 4.83936 4.87375 5.18760 5.24005 5.31489 5.41186 5.63821 5.69091 5.74593 5.84870 5.90537 5.94465 5.99705 6.14770 6.17855 6.57762 6.73480 6.84548 6.93747 7.14381 7.20857 7.36942 7.59586 8.10315 8.37250 8.79792 9.57712 10.96573 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.042432 B = 0.001848 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.714362 B =15150.922403 C =15503.982803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.065 0.935 4 C 0.017 3.983 5 C -0.598 4.598 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.913 5.913 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.121 3.879 14 N -0.731 5.731 15 C 0.230 3.770 16 C -0.135 4.135 17 C -0.049 4.049 18 C -0.027 4.027 19 O -0.188 6.188 20 C 0.141 3.859 21 C 0.584 3.416 22 F -0.153 7.153 23 F -0.155 7.155 24 F -0.142 7.142 25 N -0.412 5.412 26 C 0.061 3.939 27 C -0.150 4.150 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.008 0.992 32 H 0.010 0.990 33 H 0.269 0.731 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.404 0.596 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 0.331 -25.246 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.021 4.021 5 C -0.636 4.636 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.549 5.549 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.210 1.210 13 C -0.003 4.003 14 N -0.359 5.359 15 C 0.121 3.879 16 C -0.157 4.157 17 C -0.068 4.068 18 C -0.077 4.077 19 O -0.077 6.077 20 C -0.073 4.073 21 C 0.528 3.472 22 F -0.134 7.134 23 F -0.137 7.137 24 F -0.123 7.123 25 N -0.145 5.145 26 C -0.052 4.052 27 C -0.176 4.176 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.239 0.761 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.522 0.726 -23.592 23.609 hybrid contribution 0.101 -0.251 -1.723 1.744 sum -0.422 0.476 -25.316 25.324 Atomic orbital electron populations 1.21729 0.95551 1.01206 1.00536 1.21308 0.95909 0.99833 0.93745 0.91632 1.19214 0.95511 0.95639 0.91717 1.22002 1.39090 1.10405 0.92139 0.93107 1.25830 0.94610 0.97077 1.01437 1.70766 1.35986 1.14568 1.33562 0.83524 0.76001 0.75269 0.75385 1.21471 1.21496 1.21001 1.21764 0.99300 0.95333 0.83860 1.45076 1.60631 1.28147 1.02035 1.17594 0.92363 0.92137 0.85779 1.20824 1.01233 0.96516 0.97126 1.19664 1.00380 0.99684 0.87076 1.20158 1.06097 0.99729 0.81744 1.84415 1.63110 1.42764 1.17450 1.25363 0.99377 0.87346 0.95188 1.16056 0.75186 0.74999 0.80932 1.93321 1.51611 1.77355 1.91129 1.93305 1.96127 1.39968 1.84258 1.93323 1.48252 1.79886 1.90872 1.70430 1.18022 1.26281 0.99744 1.19275 1.00748 0.93810 0.91333 1.19446 1.07940 1.03112 0.87091 0.91487 0.94868 0.93460 0.97336 0.97165 0.92103 0.92163 0.92193 0.76072 0.83374 0.84017 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.88 37.16 0.33 -1.88 16 2 C -0.09 -1.57 2.37 -90.62 -0.22 -1.78 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.02 0.38 3.76 -27.88 -0.10 0.28 16 5 C -0.60 -15.84 8.41 -34.44 -0.29 -16.12 16 6 H 0.05 1.33 7.06 -52.49 -0.37 0.96 16 7 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 8 N -0.91 -26.87 13.65 55.43 0.76 -26.11 16 9 Si 1.07 24.43 29.90 -169.99 -5.08 19.35 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.12 1.69 4.30 -4.04 -0.02 1.68 16 14 N -0.73 -8.80 5.47 -58.63 -0.32 -9.12 16 15 C 0.23 2.69 6.65 -83.75 -0.56 2.13 16 16 C -0.14 -1.44 9.29 -39.33 -0.37 -1.81 16 17 C -0.05 -0.50 10.05 -39.56 -0.40 -0.89 16 18 C -0.03 -0.33 7.43 -38.64 -0.29 -0.61 16 19 O -0.19 -2.28 10.73 3.40 0.04 -2.24 16 20 C 0.14 1.65 7.48 -13.09 -0.10 1.55 16 21 C 0.58 5.44 3.57 36.01 0.13 5.57 16 22 F -0.15 -1.38 17.30 2.25 0.04 -1.35 16 23 F -0.16 -1.36 17.27 2.25 0.04 -1.32 16 24 F -0.14 -1.34 17.22 2.25 0.04 -1.30 16 25 N -0.41 -5.48 11.22 -8.71 -0.10 -5.57 16 26 C 0.06 0.81 7.23 -84.71 -0.61 0.19 16 27 C -0.15 -1.80 9.93 -39.06 -0.39 -2.19 16 28 H 0.07 1.24 6.95 -51.93 -0.36 0.88 16 29 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16 32 H 0.01 0.25 8.00 -51.93 -0.42 -0.17 16 33 H 0.27 7.81 7.22 -40.82 -0.29 7.51 16 34 H 0.06 0.85 7.94 -51.93 -0.41 0.43 16 35 H 0.06 0.83 7.94 -51.93 -0.41 0.41 16 36 H 0.40 4.51 7.66 -40.82 -0.31 4.20 16 37 H 0.15 1.41 6.70 -52.49 -0.35 1.06 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -29.43 345.96 -6.56 -35.99 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.21 Total: 0.05 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.97 Total: -13.59 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.34 Total: -40.81 kcal Atomic # 8 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.12 Total: -3.96 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.08 Total: 19.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.43 -6.56 -35.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602589336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.086 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds