Wall clock time and date at job start Tue Mar 31 2020 16:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39897 * 119.99800 * 179.97438 * 14 13 2 16 16 C 1.39320 * 119.86750 * 0.02562 * 15 14 13 17 17 C 1.37827 * 120.40262 * 180.02562 * 16 15 14 18 18 C 1.38691 * 119.97661 * 359.97438 * 17 16 15 19 19 O 1.35216 * 133.84397 * 179.97438 * 18 17 16 20 20 C 1.34202 * 108.15519 * 179.97438 * 19 18 17 21 21 C 1.50699 * 124.85076 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.47371 * 270.02879 * 21 20 19 23 23 F 1.39902 * 109.47356 * 30.02998 * 21 20 19 24 24 F 1.39905 * 109.47291 * 150.02708 * 21 20 19 25 25 N 1.29911 * 110.29827 * 0.02562 * 20 19 18 26 26 C 1.36078 * 108.81021 * 359.97438 * 25 20 19 27 27 C 1.38304 * 119.86913 * 179.72662 * 15 14 13 28 28 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 29 29 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 30 30 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 32 32 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 33 33 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 34 34 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 35 35 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 36 36 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 37 37 H 1.08002 * 119.79880 * 359.97438 * 16 15 14 38 38 H 1.07999 * 120.01328 * 180.02562 * 17 16 15 39 39 H 1.08004 * 120.16625 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0095 -0.4305 -3.7123 16 6 2.7332 -1.6142 -3.8391 17 6 3.0913 -2.0828 -5.0849 18 6 2.7304 -1.3748 -6.2216 19 8 2.9259 -1.5663 -7.5457 20 6 2.3488 -0.5497 -8.2050 21 6 2.3415 -0.3887 -9.7033 22 9 3.4656 0.3440 -10.0991 23 9 2.3702 -1.6499 -10.3081 24 9 1.1817 0.2894 -10.0939 25 7 1.7982 0.2762 -7.3669 26 6 2.0005 -0.1826 -6.1018 27 6 1.6374 0.2829 -4.8372 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2953 33 1 2.9286 -2.0221 3.0617 34 1 3.1263 -0.7997 -1.2054 35 1 1.6053 -1.7200 -1.2950 36 1 1.1490 0.8592 -2.3518 37 1 3.0161 -2.1676 -2.9559 38 1 3.6519 -3.0013 -5.1759 39 1 1.0726 1.1980 -4.7373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602589336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:08 Heat of formation + Delta-G solvation = -138.106307 kcal Electronic energy + Delta-G solvation = -26470.999516 eV Core-core repulsion = 21964.060649 eV Total energy + Delta-G solvation = -4506.938867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.57920 -49.08572 -49.07954 -44.57549 -40.13000 -37.99641 -36.29598 -35.55587 -33.90475 -31.84789 -30.74541 -28.54446 -27.96132 -27.18778 -24.98439 -24.19234 -23.35264 -23.12274 -21.21501 -20.13001 -20.04253 -19.83135 -19.16172 -18.87261 -18.22434 -17.95171 -17.20952 -16.16592 -15.95759 -15.86169 -15.79367 -15.63407 -15.45386 -15.45035 -15.27145 -15.17411 -15.16307 -14.79588 -14.66199 -14.15233 -14.06006 -13.67333 -13.53152 -13.36462 -13.01613 -12.93240 -12.84700 -12.54814 -12.02910 -11.95176 -11.85130 -11.76199 -11.41036 -11.07350 -10.60212 -10.50580 -9.87027 -8.62638 -8.53919 -6.32350 -0.82070 0.21381 0.27441 0.89943 1.39379 1.53965 1.61807 1.78704 1.91506 2.33347 2.49215 2.58714 2.79861 2.85948 3.20600 3.27712 3.52141 3.81891 3.93082 3.97320 4.03251 4.09456 4.28846 4.36573 4.66887 4.67583 4.82578 4.84614 4.91650 4.95877 5.04409 5.06170 5.16414 5.23112 5.32173 5.43818 5.61457 5.99735 6.05231 6.17429 6.25191 6.65309 6.67091 7.47142 8.78692 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.042432 B = 0.001848 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.714362 B =15150.922403 C =15503.982803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 H 0.062 0.938 4 C 0.017 3.983 5 C -0.604 4.604 6 H 0.052 0.948 7 C -0.042 4.042 8 N -0.942 5.942 9 Si 1.114 2.886 10 H -0.275 1.275 11 H -0.270 1.270 12 H -0.287 1.287 13 C 0.136 3.864 14 N -0.728 5.728 15 C 0.226 3.774 16 C -0.137 4.137 17 C -0.040 4.040 18 C -0.040 4.040 19 O -0.190 6.190 20 C 0.141 3.859 21 C 0.595 3.405 22 F -0.149 7.149 23 F -0.149 7.149 24 F -0.141 7.141 25 N -0.434 5.434 26 C 0.040 3.960 27 C -0.155 4.155 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.043 0.957 31 H -0.009 1.009 32 H -0.006 1.006 33 H 0.257 0.743 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.409 0.591 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 0.716 -26.131 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.099 4.099 3 H 0.081 0.919 4 C -0.021 4.021 5 C -0.643 4.643 6 H 0.070 0.930 7 C -0.239 4.239 8 N -0.580 5.580 9 Si 0.936 3.064 10 H -0.201 1.201 11 H -0.194 1.194 12 H -0.213 1.213 13 C 0.012 3.988 14 N -0.357 5.357 15 C 0.119 3.881 16 C -0.158 4.158 17 C -0.059 4.059 18 C -0.090 4.090 19 O -0.080 6.080 20 C -0.073 4.073 21 C 0.539 3.461 22 F -0.131 7.131 23 F -0.130 7.130 24 F -0.122 7.122 25 N -0.166 5.166 26 C -0.072 4.072 27 C -0.180 4.180 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.010 0.990 32 H 0.012 0.988 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.245 0.755 37 H 0.179 0.821 38 H 0.188 0.812 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.836 1.125 -24.514 24.554 hybrid contribution 0.206 -0.380 -1.524 1.584 sum -0.630 0.745 -26.038 26.056 Atomic orbital electron populations 1.21655 0.94589 1.01162 1.01047 1.21087 0.96598 0.99199 0.93002 0.91950 1.19146 0.94371 0.95055 0.93505 1.22443 1.37994 1.10417 0.93401 0.92968 1.27249 0.94275 0.97305 1.05062 1.70890 1.38169 1.15935 1.33054 0.82955 0.76856 0.74419 0.72130 1.20124 1.19444 1.21261 1.21420 0.99223 0.95146 0.83035 1.44832 1.61058 1.28260 1.01522 1.17643 0.92624 0.92546 0.85302 1.21038 1.00781 0.96213 0.97811 1.19977 0.99631 1.00208 0.86124 1.20495 1.06401 0.99937 0.82183 1.84408 1.63153 1.42873 1.17539 1.25791 0.98616 0.86878 0.96022 1.15816 0.75232 0.75178 0.79857 1.93329 1.51476 1.77317 1.90936 1.93320 1.96107 1.39647 1.83968 1.93327 1.48297 1.79911 1.90708 1.70399 1.18951 1.27087 1.00189 1.19528 1.01545 0.94532 0.91628 1.19527 1.08089 1.03517 0.86845 0.93787 0.91500 0.93759 0.99043 0.98775 0.93328 0.92076 0.91627 0.75479 0.82099 0.81218 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.88 71.98 0.64 -3.40 16 2 C -0.08 -2.73 2.37 -10.79 -0.03 -2.76 16 3 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.02 0.78 3.76 29.85 0.11 0.89 16 5 C -0.60 -32.11 8.41 25.60 0.22 -31.90 16 6 H 0.05 2.70 7.06 -2.91 -0.02 2.68 16 7 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 8 N -0.94 -56.41 13.65 21.45 0.29 -56.11 16 9 Si 1.11 48.78 29.90 68.60 2.05 50.84 16 10 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 13 C 0.14 3.59 4.30 86.38 0.37 3.96 16 14 N -0.73 -16.00 5.47 -339.39 -1.86 -17.85 16 15 C 0.23 4.87 6.65 38.13 0.25 5.12 16 16 C -0.14 -2.62 9.29 22.43 0.21 -2.41 16 17 C -0.04 -0.73 10.05 22.28 0.22 -0.51 16 18 C -0.04 -0.92 7.43 22.88 0.17 -0.75 16 19 O -0.19 -4.38 10.73 -10.75 -0.12 -4.50 16 20 C 0.14 3.17 7.48 88.39 0.66 3.83 16 21 C 0.60 10.41 3.57 71.24 0.25 10.67 16 22 F -0.15 -2.53 17.30 44.97 0.78 -1.75 16 23 F -0.15 -2.40 17.27 44.97 0.78 -1.62 16 24 F -0.14 -2.51 17.22 44.97 0.77 -1.73 16 25 N -0.43 -11.21 11.22 -296.31 -3.33 -14.54 16 26 C 0.04 1.02 7.23 39.31 0.28 1.31 16 27 C -0.15 -3.49 9.93 22.61 0.22 -3.27 16 28 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 29 H 0.07 1.67 7.18 -2.39 -0.02 1.65 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H -0.01 -0.43 8.01 -2.39 -0.02 -0.45 16 32 H -0.01 -0.30 8.00 -2.39 -0.02 -0.32 16 33 H 0.26 15.41 7.22 -92.71 -0.67 14.74 16 34 H 0.06 1.62 7.94 -2.39 -0.02 1.60 16 35 H 0.07 1.68 7.94 -2.39 -0.02 1.67 16 36 H 0.41 8.19 7.66 -92.71 -0.71 7.47 16 37 H 0.16 2.65 6.70 -2.91 -0.02 2.63 16 38 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -63.30 345.96 3.94 -59.37 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.51 Total: 8.98 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.05 Total: -21.07 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -4.89 Total: -88.51 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.12 Total: -4.50 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 2.33 Total: -5.11 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.84 kcal Total: -63.30 3.94 -59.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602589336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.740 kcal (2) G-P(sol) polarization free energy of solvation -63.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds