Wall clock time and date at job start Tue Mar 31 2020 16:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46496 * 109.47484 * 295.00296 * 13 2 1 15 15 C 1.39777 * 120.00308 * 180.02562 * 14 13 2 16 16 C 1.39335 * 119.84363 * 359.72048 * 15 14 13 17 17 C 1.36596 * 120.48755 * 179.75888 * 16 15 14 18 18 C 1.39613 * 119.94440 * 0.51547 * 17 16 15 19 19 N 1.36141 * 133.73081 * 179.76591 * 18 17 16 20 20 C 1.29869 * 108.81065 * 179.97438 * 19 18 17 21 21 C 1.50693 * 124.85038 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47552 * 4.97312 * 21 20 19 23 23 F 1.39901 * 109.47237 * 124.97498 * 21 20 19 24 24 F 1.39897 * 109.47020 * 244.97211 * 21 20 19 25 25 O 1.34300 * 110.29420 * 359.97438 * 20 19 18 26 26 C 1.35102 * 108.15524 * 0.02562 * 25 20 19 27 27 C 1.38571 * 119.84507 * 179.97438 * 15 14 13 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 33 33 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 35 35 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 36 36 H 0.97005 * 119.99584 * 359.97438 * 14 13 2 37 37 H 1.07994 * 119.75566 * 0.02785 * 16 15 14 38 38 H 1.07996 * 120.02823 * 180.25732 * 17 16 15 39 39 H 1.08004 * 120.16445 * 359.95390 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6523 0.0353 2.4424 15 6 2.0090 -0.4297 3.7113 16 6 2.7283 -1.6163 3.8381 17 6 3.0879 -2.0804 5.0714 18 6 2.7250 -1.3691 6.2167 19 7 2.9232 -1.5662 7.5491 20 6 2.3712 -0.5896 8.2034 21 6 2.3749 -0.4476 9.7037 22 9 3.1566 -1.4623 10.2663 23 9 2.9066 0.7984 10.0529 24 9 1.0650 -0.5470 10.1847 25 8 1.7976 0.2762 7.3520 26 6 1.9963 -0.1759 6.0944 27 6 1.6411 0.2888 4.8377 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 2.9246 -1.8413 -4.7316 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1487 0.8594 2.3517 37 1 3.0071 -2.1710 2.9544 38 1 3.6490 -2.9988 5.1608 39 1 1.0807 1.2065 4.7369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602701585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:12 Heat of formation + Delta-G solvation = -117.727978 kcal Electronic energy + Delta-G solvation = -26441.589398 eV Core-core repulsion = 21935.534202 eV Total energy + Delta-G solvation = -4506.055196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.72943 -48.24782 -48.23325 -43.58638 -39.21478 -36.68692 -35.26233 -33.79925 -32.15458 -31.11250 -29.84532 -27.34765 -26.73604 -25.82411 -23.76245 -23.00373 -22.40445 -21.91326 -19.65083 -19.31213 -19.18923 -18.87594 -17.97003 -17.22884 -16.96478 -16.78096 -16.17103 -15.05378 -15.04079 -14.94176 -14.78673 -14.61878 -14.49697 -14.34676 -14.33922 -14.33261 -14.00131 -13.44146 -13.23242 -13.00135 -12.87127 -12.53220 -12.26608 -11.92980 -11.82110 -11.63681 -11.02641 -11.01090 -10.94348 -10.53167 -10.50775 -10.15967 -9.84459 -9.46765 -9.17265 -9.14819 -8.47784 -7.59659 -6.12149 -4.14459 0.29372 1.03579 1.22348 1.91188 2.29988 2.84425 3.22962 3.28294 3.31673 3.34592 3.41892 3.73137 3.73717 4.19365 4.35910 4.41538 4.71118 4.80888 5.04172 5.23607 5.26251 5.43719 5.48863 5.57215 5.69655 5.76699 5.83025 5.97077 5.98695 6.13340 6.21619 6.24730 6.64156 6.82764 6.87722 6.99668 7.11891 7.48379 7.51881 7.60603 7.85608 8.26980 8.91203 9.50152 10.99135 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.042858 B = 0.001843 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.159544 B =15185.012217 C =15531.779828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.064 0.936 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.117 3.883 14 N -0.720 5.720 15 C 0.278 3.722 16 C -0.181 4.181 17 C 0.007 3.993 18 C -0.058 4.058 19 N -0.387 5.387 20 C 0.103 3.897 21 C 0.587 3.413 22 F -0.142 7.142 23 F -0.158 7.158 24 F -0.158 7.158 25 O -0.194 6.194 26 C 0.096 3.904 27 C -0.210 4.210 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.405 0.595 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 1.421 23.928 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 H 0.083 0.917 4 C -0.008 4.008 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.006 4.006 14 N -0.344 5.344 15 C 0.167 3.833 16 C -0.204 4.204 17 C -0.012 4.012 18 C -0.173 4.173 19 N -0.116 5.116 20 C -0.110 4.110 21 C 0.530 3.470 22 F -0.123 7.123 23 F -0.139 7.139 24 F -0.139 7.139 25 O -0.084 6.084 26 C 0.044 3.956 27 C -0.236 4.236 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.241 0.759 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.578 0.700 23.885 23.902 hybrid contribution -0.790 1.402 -1.027 1.909 sum -1.368 2.102 22.858 22.995 Atomic orbital electron populations 1.21750 0.95734 1.01291 1.00391 1.21471 0.95792 0.99944 0.94334 0.91716 1.19090 0.96341 0.95598 0.89737 1.21196 1.35170 1.08429 0.90836 0.92469 1.25016 0.95154 0.95076 0.99206 1.69955 1.38646 1.21124 1.23553 0.86553 0.78322 0.80073 0.83155 1.19769 1.21007 1.21001 1.21880 0.99757 0.95472 0.83445 1.45290 1.58899 1.27804 1.02379 1.17582 0.89447 0.91033 0.85213 1.20585 1.04225 0.97385 0.98220 1.19880 0.95158 0.98010 0.88202 1.19514 1.08901 0.98546 0.90358 1.70264 1.15850 1.21299 1.04225 1.25049 1.02706 0.89979 0.93242 1.16011 0.74874 0.74877 0.81189 1.93305 1.74398 1.59566 1.85033 1.93301 1.86206 1.41803 1.92597 1.93303 1.35969 1.95776 1.88841 1.84416 1.63691 1.45627 1.14660 1.19872 0.97780 0.94135 0.83801 1.18897 1.13607 1.05167 0.85890 0.95090 0.91528 0.93294 0.96332 0.96186 0.92952 0.91708 0.91631 0.75935 0.83569 0.84000 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.88 37.16 0.33 -1.80 16 2 C -0.10 -1.63 2.37 -90.62 -0.22 -1.85 16 3 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.52 -13.37 8.41 -34.44 -0.29 -13.66 16 6 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.12 1.59 4.29 -4.05 -0.02 1.57 16 14 N -0.72 -8.23 5.46 -58.58 -0.32 -8.55 16 15 C 0.28 3.16 6.65 -83.70 -0.56 2.60 16 16 C -0.18 -1.96 9.24 -39.77 -0.37 -2.32 16 17 C 0.01 0.08 10.04 -39.66 -0.40 -0.32 16 18 C -0.06 -0.75 7.24 -84.65 -0.61 -1.37 16 19 N -0.39 -5.16 11.05 -8.66 -0.10 -5.25 16 20 C 0.10 1.26 7.56 -13.11 -0.10 1.16 16 21 C 0.59 5.78 3.57 36.00 0.13 5.91 16 22 F -0.14 -1.40 17.09 2.25 0.04 -1.36 16 23 F -0.16 -1.49 17.30 2.25 0.04 -1.46 16 24 F -0.16 -1.49 17.30 2.25 0.04 -1.46 16 25 O -0.19 -2.49 10.78 3.47 0.04 -2.45 16 26 C 0.10 1.23 7.43 -38.65 -0.29 0.94 16 27 C -0.21 -2.39 9.91 -39.32 -0.39 -2.78 16 28 H 0.03 0.40 7.18 -51.93 -0.37 0.03 16 29 H 0.07 1.18 6.95 -51.93 -0.36 0.82 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 35 H 0.07 0.89 7.95 -51.92 -0.41 0.48 16 36 H 0.40 4.19 7.66 -40.82 -0.31 3.88 16 37 H 0.15 1.42 6.69 -52.49 -0.35 1.07 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -28.45 347.01 -6.58 -35.03 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -4.26 Total: -0.74 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.00 Total: -9.92 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.32 Total: -38.46 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.12 Total: -4.27 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.45 -6.58 -35.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602701585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.697 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds