Wall clock time and date at job start Tue Mar 31 2020 16:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46496 * 109.47484 * 295.00296 * 13 2 1 15 15 C 1.39777 * 120.00308 * 180.02562 * 14 13 2 16 16 C 1.39335 * 119.84363 * 359.72048 * 15 14 13 17 17 C 1.36596 * 120.48755 * 179.75888 * 16 15 14 18 18 C 1.39613 * 119.94440 * 0.51547 * 17 16 15 19 19 N 1.36141 * 133.73081 * 179.76591 * 18 17 16 20 20 C 1.29869 * 108.81065 * 179.97438 * 19 18 17 21 21 C 1.50693 * 124.85038 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47552 * 4.97312 * 21 20 19 23 23 F 1.39901 * 109.47237 * 124.97498 * 21 20 19 24 24 F 1.39897 * 109.47020 * 244.97211 * 21 20 19 25 25 O 1.34300 * 110.29420 * 359.97438 * 20 19 18 26 26 C 1.35102 * 108.15524 * 0.02562 * 25 20 19 27 27 C 1.38571 * 119.84507 * 179.97438 * 15 14 13 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 33 33 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 35 35 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 36 36 H 0.97005 * 119.99584 * 359.97438 * 14 13 2 37 37 H 1.07994 * 119.75566 * 0.02785 * 16 15 14 38 38 H 1.07996 * 120.02823 * 180.25732 * 17 16 15 39 39 H 1.08004 * 120.16445 * 359.95390 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6523 0.0353 2.4424 15 6 2.0090 -0.4297 3.7113 16 6 2.7283 -1.6163 3.8381 17 6 3.0879 -2.0804 5.0714 18 6 2.7250 -1.3691 6.2167 19 7 2.9232 -1.5662 7.5491 20 6 2.3712 -0.5896 8.2034 21 6 2.3749 -0.4476 9.7037 22 9 3.1566 -1.4623 10.2663 23 9 2.9066 0.7984 10.0529 24 9 1.0650 -0.5470 10.1847 25 8 1.7976 0.2762 7.3520 26 6 1.9963 -0.1759 6.0944 27 6 1.6411 0.2888 4.8377 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 2.9246 -1.8413 -4.7316 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1487 0.8594 2.3517 37 1 3.0071 -2.1710 2.9544 38 1 3.6490 -2.9988 5.1608 39 1 1.0807 1.2065 4.7369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602701585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:11 Heat of formation + Delta-G solvation = -134.782468 kcal Electronic energy + Delta-G solvation = -26442.328936 eV Core-core repulsion = 21935.534202 eV Total energy + Delta-G solvation = -4506.794734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.51571 -49.02357 -49.01909 -44.51262 -40.15393 -37.90147 -36.30823 -35.19835 -33.80125 -31.99331 -30.85232 -28.92893 -27.84862 -26.94457 -25.07226 -24.22637 -23.35939 -22.91838 -20.96595 -20.23041 -19.98269 -19.71192 -18.92864 -18.48936 -18.11809 -17.90198 -17.38319 -16.56603 -16.06198 -15.85543 -15.80854 -15.71776 -15.39624 -15.18834 -15.11741 -15.11066 -14.97367 -14.64521 -14.35204 -14.23696 -14.02251 -13.83725 -13.49375 -13.31287 -12.99823 -12.79708 -12.74196 -12.61805 -12.24823 -12.02689 -11.82815 -11.64493 -11.16525 -11.01387 -10.88931 -10.52667 -10.02272 -8.51870 -8.17201 -6.24934 -0.60849 0.13665 0.36112 0.99243 1.40301 1.42182 1.43105 1.53257 2.01530 2.32703 2.44462 2.53415 2.91321 2.93658 3.17733 3.31223 3.53496 3.82500 3.93400 4.04833 4.18524 4.20374 4.41091 4.57911 4.65491 4.78231 4.83447 4.90412 4.95001 4.99895 5.11783 5.24430 5.32416 5.37433 5.50091 5.55273 5.79742 5.89388 6.01005 6.16052 6.30340 6.63930 6.91774 7.43474 8.94548 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.042858 B = 0.001843 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.159544 B =15185.012217 C =15531.779828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 H 0.065 0.935 4 C 0.032 3.968 5 C -0.526 4.526 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.932 5.932 9 Si 0.955 3.045 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.131 3.869 14 N -0.714 5.714 15 C 0.275 3.725 16 C -0.181 4.181 17 C 0.008 3.992 18 C -0.076 4.076 19 N -0.404 5.404 20 C 0.100 3.900 21 C 0.597 3.403 22 F -0.141 7.141 23 F -0.154 7.154 24 F -0.153 7.153 25 O -0.199 6.199 26 C 0.078 3.922 27 C -0.206 4.206 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.044 0.956 31 H -0.005 1.005 32 H -0.003 1.003 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.412 0.588 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 2.325 24.604 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.573 5.573 9 Si 0.781 3.219 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.008 3.992 14 N -0.339 5.339 15 C 0.165 3.835 16 C -0.204 4.204 17 C -0.012 4.012 18 C -0.191 4.191 19 N -0.134 5.134 20 C -0.113 4.113 21 C 0.541 3.459 22 F -0.122 7.122 23 F -0.135 7.135 24 F -0.135 7.135 25 O -0.090 6.090 26 C 0.027 3.973 27 C -0.231 4.231 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.014 0.986 32 H 0.016 0.984 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.175 0.825 38 H 0.179 0.821 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.247 1.624 24.581 24.666 hybrid contribution -0.575 1.110 -1.190 1.725 sum -1.821 2.733 23.392 23.621 Atomic orbital electron populations 1.21681 0.94648 1.01234 1.01086 1.21213 0.96568 0.99421 0.93280 0.91629 1.18979 0.94798 0.94859 0.91918 1.21660 1.34247 1.08556 0.92007 0.92003 1.25872 0.95432 0.96061 1.02488 1.70077 1.40234 1.22826 1.24167 0.85545 0.77944 0.78977 0.79461 1.18611 1.20899 1.20863 1.21532 0.99611 0.95287 0.82798 1.45012 1.59264 1.27949 1.01693 1.17615 0.89597 0.91267 0.84971 1.20757 1.03788 0.97270 0.98583 1.20110 0.94951 0.98511 0.87588 1.19856 1.09395 0.99103 0.90704 1.70246 1.16571 1.21941 1.04666 1.25476 1.02131 0.89613 0.94061 1.15783 0.75006 0.74981 0.80159 1.93310 1.74410 1.59595 1.84844 1.93310 1.86176 1.41567 1.92427 1.93311 1.35745 1.95774 1.88634 1.84399 1.63877 1.45864 1.14861 1.20128 0.98489 0.94524 0.84178 1.19048 1.13180 1.05601 0.85270 0.91578 0.93600 0.93729 0.98643 0.98414 0.93011 0.91312 0.91687 0.75067 0.82502 0.82062 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 8.88 71.98 0.64 -3.24 16 2 C -0.09 -2.81 2.37 -10.79 -0.03 -2.84 16 3 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.03 1.47 4.45 29.85 0.13 1.61 16 5 C -0.53 -27.23 8.41 25.60 0.22 -27.01 16 6 H 0.06 3.07 7.06 -2.91 -0.02 3.05 16 7 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 8 N -0.93 -53.87 13.29 21.45 0.28 -53.58 16 9 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.13 3.34 4.29 86.38 0.37 3.71 16 14 N -0.71 -14.55 5.46 -339.26 -1.85 -16.40 16 15 C 0.28 5.66 6.65 38.22 0.25 5.91 16 16 C -0.18 -3.56 9.24 22.15 0.20 -3.36 16 17 C 0.01 0.16 10.04 22.22 0.22 0.38 16 18 C -0.08 -1.88 7.24 39.32 0.28 -1.60 16 19 N -0.40 -10.48 11.05 -296.12 -3.27 -13.75 16 20 C 0.10 2.37 7.56 88.40 0.67 3.04 16 21 C 0.60 11.18 3.57 71.23 0.25 11.43 16 22 F -0.14 -2.63 17.09 44.97 0.77 -1.86 16 23 F -0.15 -2.74 17.30 44.97 0.78 -1.96 16 24 F -0.15 -2.74 17.30 44.97 0.78 -1.96 16 25 O -0.20 -4.94 10.78 -10.50 -0.11 -5.05 16 26 C 0.08 1.91 7.43 22.87 0.17 2.08 16 27 C -0.21 -4.27 9.91 22.44 0.22 -4.05 16 28 H 0.07 1.52 7.18 -2.39 -0.02 1.50 16 29 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.07 1.72 7.93 -2.39 -0.02 1.70 16 35 H 0.06 1.68 7.95 -2.38 -0.02 1.66 16 36 H 0.41 7.29 7.66 -92.70 -0.71 6.58 16 37 H 0.16 2.73 6.69 -2.91 -0.02 2.71 16 38 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 39 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -60.96 347.01 3.88 -57.08 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.40 Total: 6.75 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 4.08 Total: -13.53 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -4.84 Total: -83.74 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.11 Total: -5.05 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 2.32 Total: -5.78 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -60.96 3.88 -57.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602701585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.705 kcal (2) G-P(sol) polarization free energy of solvation -60.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds