Wall clock time and date at job start Tue Mar 31 2020 16:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34372 * 125.73712 * 2 1 4 4 C 1.38329 * 107.35458 * 179.97438 * 3 2 1 5 5 C 1.46918 * 126.44367 * 179.97438 * 4 3 2 6 6 C 1.35162 * 120.00043 * 137.72861 * 5 4 3 7 7 C 1.41587 * 119.99892 * 349.11037 * 6 5 4 8 8 O 1.21672 * 120.00123 * 352.53379 * 7 6 5 9 9 O 1.34944 * 120.00237 * 172.52677 * 7 6 5 10 10 C 1.42893 * 117.00336 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47280 * 179.97438 * 10 9 7 12 12 C 1.38301 * 119.93317 * 269.72786 * 11 10 9 13 13 C 1.38103 * 120.06715 * 179.72466 * 12 11 10 14 14 C 1.38878 * 119.93213 * 0.56984 * 13 12 11 15 15 O 1.35752 * 120.07256 * 179.68177 * 14 13 12 16 16 C 1.34826 * 117.00179 * 178.45773 * 15 14 13 17 17 H 1.08004 * 119.99718 * 4.94903 * 16 15 14 18 18 C 1.38654 * 120.00071 * 184.94622 * 16 15 14 19 19 N 1.31556 * 120.00032 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99844 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47240 * 89.99905 * 20 18 16 22 22 H 1.48504 * 109.46603 * 209.99990 * 20 18 16 23 23 H 1.48501 * 109.47139 * 329.99562 * 20 18 16 24 24 C 1.38882 * 119.86102 * 359.70542 * 14 13 12 25 25 C 1.38102 * 119.93250 * 359.97438 * 24 14 13 26 26 C 1.41454 * 107.10662 * 0.26239 * 4 3 2 27 27 N 1.30429 * 108.03270 * 359.55201 * 26 4 3 28 28 H 1.09000 * 109.46782 * 90.00072 * 1 2 3 29 29 H 1.08997 * 109.47810 * 210.00529 * 1 2 3 30 30 H 1.09002 * 109.47151 * 330.00943 * 1 2 3 31 31 H 1.07988 * 126.32541 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.99917 * 317.72198 * 5 4 3 33 33 H 1.08004 * 120.00122 * 168.84231 * 6 5 4 34 34 H 1.09000 * 109.47611 * 300.00517 * 10 9 7 35 35 H 1.09007 * 109.47142 * 60.00470 * 10 9 7 36 36 H 1.07994 * 119.96765 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.03379 * 180.27762 * 13 12 11 38 38 H 0.96994 * 119.99870 * 180.02562 * 19 18 16 39 39 H 1.07999 * 120.03787 * 179.97438 * 24 14 13 40 40 H 1.07996 * 119.97054 * 179.97438 * 25 24 14 41 41 H 1.08006 * 125.97946 * 179.70428 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2499 1.0907 0.0000 4 6 3.5626 0.6545 0.0006 5 6 4.7635 1.5008 0.0003 6 6 5.8147 1.1827 0.7881 7 6 5.6796 0.1789 1.7775 8 8 4.5865 -0.3013 2.0117 9 8 6.7633 -0.2453 2.4607 10 6 6.5538 -1.2608 3.4439 11 6 7.8669 -1.6050 4.0983 12 6 8.6581 -2.6096 3.5715 13 6 9.8647 -2.9234 4.1656 14 6 10.2777 -2.2372 5.3001 15 8 11.4602 -2.5478 5.8901 16 6 11.8155 -1.8213 6.9689 17 1 11.1341 -1.0879 7.3743 18 6 13.0555 -2.0157 7.5579 19 7 13.8853 -2.9094 7.0645 20 14 13.5474 -1.0096 9.0531 21 1 13.1264 -1.7193 10.2877 22 1 15.0213 -0.8282 9.0644 23 1 12.8856 0.3186 8.9955 24 6 9.4783 -1.2327 5.8300 25 6 8.2759 -0.9190 5.2275 26 6 3.5311 -0.7597 -0.0052 27 7 2.2822 -1.1358 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.9173 2.1181 -0.0004 32 1 4.8064 2.3771 -0.6295 33 1 6.7589 1.6910 0.6600 34 1 5.8556 -0.8978 4.1982 35 1 6.1424 -2.1499 2.9660 36 1 8.3340 -3.1464 2.6923 37 1 10.4842 -3.7050 3.7511 38 1 14.7526 -3.0456 7.4768 39 1 9.7966 -0.6975 6.7124 40 1 7.6536 -0.1384 5.6393 41 1 4.3907 -1.4135 -0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733418811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:23 Heat of formation + Delta-G solvation = 24.679660 kcal Electronic energy + Delta-G solvation = -25686.571423 eV Core-core repulsion = 21728.548226 eV Total energy + Delta-G solvation = -3958.023197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39738 -40.26917 -39.02716 -37.13412 -36.08609 -34.30045 -32.93428 -32.39694 -30.61973 -30.19896 -29.77970 -27.18590 -26.08363 -25.08327 -23.72577 -22.00927 -21.42896 -21.22040 -20.53710 -19.41749 -18.03686 -17.87343 -17.20185 -16.91475 -16.15275 -15.84843 -15.66515 -14.79656 -14.73164 -14.53664 -14.39606 -14.06290 -13.70062 -13.62547 -13.45391 -13.13451 -13.02765 -12.91842 -12.72989 -12.68531 -12.28376 -12.14994 -11.69896 -11.35336 -11.03396 -10.90982 -10.77262 -10.63187 -10.46758 -10.43442 -10.26684 -9.97251 -9.51586 -9.36901 -8.87725 -8.21565 -8.15234 -7.27752 -6.49225 -4.07776 0.65999 1.72268 2.07903 2.20346 2.27682 2.80959 3.09855 3.12090 3.14513 3.17057 3.32672 3.93840 4.22016 4.48566 4.55829 4.72001 4.76577 4.88085 5.01451 5.04505 5.07990 5.20481 5.26595 5.33061 5.34021 5.43929 5.52736 5.69269 5.71533 5.82991 5.99205 6.15931 6.17885 6.38583 6.43628 6.64640 6.72324 6.72652 6.86318 7.01736 7.20299 7.32809 7.39896 7.52966 7.76978 7.95861 8.02483 8.96193 9.64872 10.68407 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.001861 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.028101 B =15043.797901 C =15222.351592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.375 5.375 3 C 0.078 3.922 4 C -0.234 4.234 5 C 0.044 3.956 6 C -0.217 4.217 7 C 0.489 3.511 8 O -0.508 6.508 9 O -0.346 6.346 10 C 0.130 3.870 11 C -0.201 4.201 12 C -0.049 4.049 13 C -0.196 4.196 14 C 0.162 3.838 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.238 4.238 25 C -0.046 4.046 26 C 0.125 3.875 27 N -0.306 5.306 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.431 10.311 -14.567 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.154 5.154 3 C -0.069 4.069 4 C -0.246 4.246 5 C 0.024 3.976 6 C -0.236 4.236 7 C 0.337 3.663 8 O -0.399 6.399 9 O -0.263 6.263 10 C 0.057 3.943 11 C -0.202 4.202 12 C -0.068 4.068 13 C -0.215 4.215 14 C 0.107 3.893 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.257 4.257 25 C -0.065 4.065 26 C -0.063 4.063 27 N -0.126 5.126 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.194 0.806 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.126 0.874 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -23.298 8.859 -14.437 28.804 hybrid contribution 0.787 1.237 0.988 1.768 sum -22.511 10.095 -13.449 28.098 Atomic orbital electron populations 1.21852 0.74259 1.04597 1.03260 1.48172 1.06707 1.03872 1.56668 1.22909 0.90423 0.93299 1.00314 1.19327 0.92365 0.93537 1.19348 1.21762 0.89415 0.94261 0.92138 1.21360 1.01394 1.02059 0.98799 1.20128 0.82584 0.81785 0.81844 1.90923 1.26931 1.56182 1.65877 1.86371 1.37296 1.53543 1.49061 1.21219 0.95575 0.88868 0.88651 1.18905 0.98241 1.03012 1.00016 1.20504 0.92892 0.95832 0.97562 1.20185 0.98454 1.04891 0.97988 1.19436 0.86797 0.91854 0.91185 1.83982 1.30177 1.53084 1.40304 1.21364 1.01553 1.19735 1.04267 0.88901 1.25317 0.94683 0.97217 0.99264 1.70037 1.08346 1.31358 1.39659 0.85694 0.78258 0.79425 0.79958 1.19832 1.20197 1.19127 1.21142 0.96810 1.03257 1.04523 1.20617 0.95026 0.96628 0.94193 1.23748 0.94533 0.93736 0.94301 1.77121 1.02069 1.07636 1.25804 0.90752 0.89228 0.89558 0.80630 0.84339 0.83939 0.91808 0.91680 0.86904 0.86244 0.91914 0.85300 0.87405 0.80725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.44 59.85 0.68 1.19 16 2 N -0.37 -3.60 3.98 -67.49 -0.27 -3.87 16 3 C 0.08 0.66 11.52 -16.41 -0.19 0.47 16 4 C -0.23 -2.39 4.64 -105.13 -0.49 -2.88 16 5 C 0.04 0.36 10.15 -37.16 -0.38 -0.02 16 6 C -0.22 -2.16 9.95 -39.40 -0.39 -2.55 16 7 C 0.49 6.66 7.19 32.01 0.23 6.89 16 8 O -0.51 -7.83 11.75 -19.40 -0.23 -8.06 16 9 O -0.35 -5.34 10.09 -41.16 -0.42 -5.76 16 10 C 0.13 2.04 5.50 36.01 0.20 2.24 16 11 C -0.20 -3.62 5.51 -104.57 -0.58 -4.20 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.20 -4.17 9.99 -39.39 -0.39 -4.56 16 14 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 15 O -0.17 -4.92 9.76 0.05 0.00 -4.91 16 16 C -0.39 -10.92 9.48 30.89 0.29 -10.62 16 17 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 20 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.24 -5.21 9.17 -39.39 -0.36 -5.57 16 25 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 26 C 0.12 1.54 8.92 -16.92 -0.15 1.39 16 27 N -0.31 -3.97 12.49 30.89 0.39 -3.59 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.06 0.97 8.07 -51.93 -0.42 0.56 16 35 H 0.06 0.97 8.07 -51.92 -0.42 0.55 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.13 2.80 5.62 -52.49 -0.30 2.50 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.18 2.09 7.60 -52.48 -0.40 1.69 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -35.14 363.23 -6.71 -41.84 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.74 Total: 3.92 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -2.65 Total: -16.12 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.88 Total: -31.71 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.64 Total: -18.73 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.14 -6.71 -41.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733418811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.524 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds