Wall clock time and date at job start Tue Mar 31 2020 16:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34372 * 125.73712 * 2 1 4 4 C 1.38329 * 107.35458 * 179.97438 * 3 2 1 5 5 C 1.46918 * 126.44367 * 179.97438 * 4 3 2 6 6 C 1.35162 * 120.00043 * 137.72861 * 5 4 3 7 7 C 1.41587 * 119.99892 * 349.11037 * 6 5 4 8 8 O 1.21672 * 120.00123 * 352.53379 * 7 6 5 9 9 O 1.34944 * 120.00237 * 172.52677 * 7 6 5 10 10 C 1.42893 * 117.00336 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47280 * 179.97438 * 10 9 7 12 12 C 1.38301 * 119.93317 * 269.72786 * 11 10 9 13 13 C 1.38103 * 120.06715 * 179.72466 * 12 11 10 14 14 C 1.38878 * 119.93213 * 0.56984 * 13 12 11 15 15 O 1.35752 * 120.07256 * 179.68177 * 14 13 12 16 16 C 1.34826 * 117.00179 * 178.45773 * 15 14 13 17 17 H 1.08004 * 119.99718 * 4.94903 * 16 15 14 18 18 C 1.38654 * 120.00071 * 184.94622 * 16 15 14 19 19 N 1.31556 * 120.00032 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99844 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47240 * 89.99905 * 20 18 16 22 22 H 1.48504 * 109.46603 * 209.99990 * 20 18 16 23 23 H 1.48501 * 109.47139 * 329.99562 * 20 18 16 24 24 C 1.38882 * 119.86102 * 359.70542 * 14 13 12 25 25 C 1.38102 * 119.93250 * 359.97438 * 24 14 13 26 26 C 1.41454 * 107.10662 * 0.26239 * 4 3 2 27 27 N 1.30429 * 108.03270 * 359.55201 * 26 4 3 28 28 H 1.09000 * 109.46782 * 90.00072 * 1 2 3 29 29 H 1.08997 * 109.47810 * 210.00529 * 1 2 3 30 30 H 1.09002 * 109.47151 * 330.00943 * 1 2 3 31 31 H 1.07988 * 126.32541 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.99917 * 317.72198 * 5 4 3 33 33 H 1.08004 * 120.00122 * 168.84231 * 6 5 4 34 34 H 1.09000 * 109.47611 * 300.00517 * 10 9 7 35 35 H 1.09007 * 109.47142 * 60.00470 * 10 9 7 36 36 H 1.07994 * 119.96765 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.03379 * 180.27762 * 13 12 11 38 38 H 0.96994 * 119.99870 * 180.02562 * 19 18 16 39 39 H 1.07999 * 120.03787 * 179.97438 * 24 14 13 40 40 H 1.07996 * 119.97054 * 179.97438 * 25 24 14 41 41 H 1.08006 * 125.97946 * 179.70428 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2499 1.0907 0.0000 4 6 3.5626 0.6545 0.0006 5 6 4.7635 1.5008 0.0003 6 6 5.8147 1.1827 0.7881 7 6 5.6796 0.1789 1.7775 8 8 4.5865 -0.3013 2.0117 9 8 6.7633 -0.2453 2.4607 10 6 6.5538 -1.2608 3.4439 11 6 7.8669 -1.6050 4.0983 12 6 8.6581 -2.6096 3.5715 13 6 9.8647 -2.9234 4.1656 14 6 10.2777 -2.2372 5.3001 15 8 11.4602 -2.5478 5.8901 16 6 11.8155 -1.8213 6.9689 17 1 11.1341 -1.0879 7.3743 18 6 13.0555 -2.0157 7.5579 19 7 13.8853 -2.9094 7.0645 20 14 13.5474 -1.0096 9.0531 21 1 13.1264 -1.7193 10.2877 22 1 15.0213 -0.8282 9.0644 23 1 12.8856 0.3186 8.9955 24 6 9.4783 -1.2327 5.8300 25 6 8.2759 -0.9190 5.2275 26 6 3.5311 -0.7597 -0.0052 27 7 2.2822 -1.1358 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.9173 2.1181 -0.0004 32 1 4.8064 2.3771 -0.6295 33 1 6.7589 1.6910 0.6600 34 1 5.8556 -0.8978 4.1982 35 1 6.1424 -2.1499 2.9660 36 1 8.3340 -3.1464 2.6923 37 1 10.4842 -3.7050 3.7511 38 1 14.7526 -3.0456 7.4768 39 1 9.7966 -0.6975 6.7124 40 1 7.6536 -0.1384 5.6393 41 1 4.3907 -1.4135 -0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733418811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:21 Heat of formation + Delta-G solvation = 2.972232 kcal Electronic energy + Delta-G solvation = -25687.512728 eV Core-core repulsion = 21728.548226 eV Total energy + Delta-G solvation = -3958.964502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -42.16398 -41.34407 -40.73322 -38.63231 -37.43804 -35.04920 -34.36615 -33.60997 -32.12464 -31.83036 -30.58109 -28.06807 -27.54365 -26.60590 -24.73771 -23.69127 -22.37252 -22.09938 -21.86800 -20.28710 -19.89084 -18.93017 -18.76588 -17.92486 -17.33832 -16.83664 -16.39545 -16.37363 -16.17086 -15.84890 -15.56272 -15.37579 -15.21262 -14.80937 -14.53225 -14.31574 -14.23938 -13.88660 -13.72481 -13.53589 -13.51607 -13.40582 -13.03569 -12.94903 -12.60416 -12.42779 -12.20375 -12.11488 -11.76195 -11.51889 -11.33824 -11.19916 -10.82148 -10.73510 -10.29210 -9.84581 -9.06694 -8.85967 -8.48851 -6.17325 -0.07408 0.47797 0.54861 1.01912 1.35908 1.44471 1.53536 1.71810 1.96000 2.15257 2.17705 2.31692 2.85229 3.16869 3.44792 3.63469 3.87093 3.92431 3.99160 4.10424 4.20963 4.21957 4.30203 4.31777 4.45238 4.45970 4.54701 4.63956 4.70786 4.73617 4.75961 4.87563 4.98779 5.12172 5.22279 5.29400 5.43487 5.49406 5.65075 5.65790 5.69699 5.71366 6.00143 6.11717 6.17227 6.76953 6.95485 6.99264 7.73464 8.73912 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.001861 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.028101 B =15043.797901 C =15222.351592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.378 5.378 3 C 0.095 3.905 4 C -0.265 4.265 5 C 0.080 3.920 6 C -0.246 4.246 7 C 0.487 3.513 8 O -0.532 6.532 9 O -0.359 6.359 10 C 0.135 3.865 11 C -0.180 4.180 12 C -0.043 4.043 13 C -0.205 4.205 14 C 0.125 3.875 15 O -0.226 6.226 16 C -0.416 4.416 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.020 2.980 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.244 4.244 25 C -0.045 4.045 26 C 0.106 3.894 27 N -0.352 5.352 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.224 0.776 32 H 0.185 0.815 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.274 0.726 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.560 13.485 -15.695 32.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.157 5.157 3 C -0.054 4.054 4 C -0.276 4.276 5 C 0.061 3.939 6 C -0.266 4.266 7 C 0.337 3.663 8 O -0.425 6.425 9 O -0.277 6.277 10 C 0.061 3.939 11 C -0.180 4.180 12 C -0.061 4.061 13 C -0.224 4.224 14 C 0.074 3.926 15 O -0.132 6.132 16 C -0.492 4.492 17 H 0.121 0.879 18 C -0.219 4.219 19 N -0.555 5.555 20 Si 0.839 3.161 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.176 1.176 24 C -0.264 4.264 25 C -0.063 4.063 26 C -0.081 4.081 27 N -0.173 5.173 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.136 0.864 31 H 0.240 0.760 32 H 0.203 0.797 33 H 0.178 0.822 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.165 0.835 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.493 12.035 -15.602 33.017 hybrid contribution 1.284 0.279 1.037 1.673 sum -25.210 12.314 -14.565 31.612 Atomic orbital electron populations 1.22216 0.71945 1.05813 1.04818 1.48572 1.08120 1.03435 1.55608 1.23657 0.89533 0.94796 0.97420 1.19687 0.94207 0.92868 1.20871 1.22231 0.87303 0.94051 0.90364 1.21457 1.03213 1.02340 0.99544 1.20764 0.81692 0.81903 0.81894 1.90927 1.27500 1.57293 1.66764 1.86342 1.38583 1.53484 1.49244 1.21077 0.93788 0.89809 0.89223 1.19298 0.98475 1.01309 0.98960 1.20878 0.91487 0.95693 0.98062 1.20434 0.99680 1.04809 0.97471 1.19972 0.86524 0.93598 0.92543 1.83952 1.32453 1.55074 1.41701 1.21860 1.02364 1.20224 1.04782 0.87880 1.26617 0.94276 0.98396 1.02630 1.70180 1.09134 1.34050 1.42156 0.84574 0.78025 0.78055 0.75477 1.18815 1.19529 1.17577 1.21244 0.97713 1.02779 1.04627 1.20941 0.94126 0.97140 0.94138 1.23767 0.94273 0.95115 0.94920 1.77020 1.02843 1.09997 1.27449 0.89016 0.90017 0.86378 0.75999 0.79747 0.82215 0.91109 0.90755 0.83458 0.86189 0.91730 0.85727 0.84309 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 11.44 127.77 1.46 2.12 16 2 N -0.38 -6.35 3.98 -367.44 -1.46 -7.82 16 3 C 0.09 1.23 11.52 84.33 0.97 2.20 16 4 C -0.26 -4.71 4.64 -20.19 -0.09 -4.80 16 5 C 0.08 0.99 10.15 23.84 0.24 1.23 16 6 C -0.25 -4.25 9.95 22.39 0.22 -4.03 16 7 C 0.49 12.45 7.19 68.65 0.49 12.95 16 8 O -0.53 -15.76 11.75 19.27 0.23 -15.53 16 9 O -0.36 -10.40 10.09 -58.60 -0.59 -10.99 16 10 C 0.13 3.93 5.50 71.24 0.39 4.32 16 11 C -0.18 -6.14 5.51 -19.83 -0.11 -6.25 16 12 C -0.04 -1.53 9.69 22.25 0.22 -1.32 16 13 C -0.20 -8.88 9.99 22.39 0.22 -8.65 16 14 C 0.12 6.29 6.65 22.58 0.15 6.44 16 15 O -0.23 -13.64 9.76 -22.72 -0.22 -13.86 16 16 C -0.42 -24.24 9.48 67.92 0.64 -23.59 16 17 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 18 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 19 N -0.92 -56.18 13.67 21.61 0.30 -55.88 16 20 Si 1.02 42.67 29.55 68.60 2.03 44.70 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 24 C -0.24 -10.84 9.17 22.39 0.21 -10.63 16 25 C -0.05 -1.65 9.69 22.25 0.22 -1.44 16 26 C 0.11 2.56 8.92 85.69 0.76 3.33 16 27 N -0.35 -8.94 12.49 -56.17 -0.70 -9.64 16 28 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.22 0.54 8.06 -2.92 -0.02 0.52 16 32 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 35 H 0.07 2.05 8.07 -2.38 -0.02 2.03 16 36 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 37 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.13 5.54 5.62 -2.91 -0.02 5.52 16 40 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.16 4.02 7.60 -2.91 -0.02 4.00 16 Total: -1.00 -82.84 363.23 7.10 -75.74 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 1.06 Total: 22.15 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 6.46 Total: -28.86 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.87 Total: -73.34 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.59 Total: -40.38 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -82.84 7.10 -75.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733418811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.712 kcal (2) G-P(sol) polarization free energy of solvation -82.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds