Wall clock time and date at job start Tue Mar 31 2020 16:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34383 * 125.73681 * 2 1 4 4 C 1.38321 * 107.36086 * 180.15850 * 3 2 1 5 5 C 1.46917 * 126.44496 * 179.83385 * 4 3 2 6 6 C 1.35170 * 119.99704 * 179.71088 * 5 4 3 7 7 C 1.41582 * 119.99824 * 179.72742 * 6 5 4 8 8 O 1.21672 * 120.00102 * 0.27285 * 7 6 5 9 9 O 1.34949 * 120.00157 * 180.27520 * 7 6 5 10 10 C 1.42895 * 117.00352 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47488 * 180.02562 * 10 9 7 12 12 C 1.38309 * 119.93039 * 269.73408 * 11 10 9 13 13 C 1.38097 * 120.06854 * 179.72707 * 12 11 10 14 14 C 1.38877 * 119.92730 * 0.55902 * 13 12 11 15 15 O 1.35751 * 120.06900 * 179.68594 * 14 13 12 16 16 C 1.34830 * 117.00623 * 174.48961 * 15 14 13 17 17 H 1.08000 * 119.99502 * 5.05743 * 16 15 14 18 18 C 1.38653 * 120.00792 * 185.05987 * 16 15 14 19 19 N 1.31554 * 120.00437 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99623 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47149 * 89.99872 * 20 18 16 22 22 H 1.48497 * 109.47184 * 210.00220 * 20 18 16 23 23 H 1.48502 * 109.47447 * 330.00446 * 20 18 16 24 24 C 1.38880 * 119.86612 * 359.71274 * 14 13 12 25 25 C 1.38093 * 119.93045 * 359.97438 * 24 14 13 26 26 C 1.41451 * 107.10447 * 359.57031 * 4 3 2 27 27 N 1.30428 * 108.03468 * 0.26657 * 26 4 3 28 28 H 1.08993 * 109.46870 * 270.29213 * 1 2 3 29 29 H 1.08995 * 109.46942 * 30.29484 * 1 2 3 30 30 H 1.09002 * 109.46258 * 150.29178 * 1 2 3 31 31 H 1.08001 * 126.31911 * 0.02639 * 3 2 1 32 32 H 1.08000 * 120.00457 * 359.71846 * 5 4 3 33 33 H 1.08000 * 119.99840 * 0.02562 * 6 5 4 34 34 H 1.08998 * 109.47639 * 300.00803 * 10 9 7 35 35 H 1.09012 * 109.46710 * 59.99936 * 10 9 7 36 36 H 1.08002 * 119.96405 * 359.97031 * 12 11 10 37 37 H 1.08001 * 120.03739 * 180.27406 * 13 12 11 38 38 H 0.96996 * 119.99821 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.03530 * 179.97438 * 24 14 13 40 40 H 1.08000 * 119.96932 * 179.97438 * 25 24 14 41 41 H 1.08005 * 125.98172 * 180.28233 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2499 1.0908 0.0000 4 6 3.5626 0.6547 -0.0037 5 6 4.7634 1.5012 -0.0084 6 6 5.9902 0.9337 -0.0057 7 6 7.1474 1.7493 -0.0161 8 8 7.0376 2.9611 -0.0225 9 8 8.3723 1.1828 -0.0191 10 6 9.4956 2.0660 -0.0303 11 6 10.7686 1.2596 -0.0327 12 6 11.3612 0.9019 1.1648 13 6 12.5248 0.1582 1.1660 14 6 13.1062 -0.2206 -0.0369 15 8 14.2535 -0.9463 -0.0391 16 6 14.7027 -1.3778 -1.2349 17 1 14.2008 -1.0743 -2.1418 18 6 15.8088 -2.2113 -1.3005 19 7 16.2467 -2.6327 -2.4672 20 14 16.6773 -2.7357 0.2680 21 1 16.0700 -3.9931 0.7734 22 1 18.1176 -2.9604 -0.0151 23 1 16.5346 -1.6705 1.2928 24 6 12.5119 0.1449 -1.2377 25 6 11.3448 0.8832 -1.2323 26 6 3.5312 -0.7594 0.0043 27 7 2.2824 -1.1356 0.0063 28 1 -0.3633 0.0052 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3632 -0.8927 -0.5093 31 1 1.9172 2.1183 0.0004 32 1 4.6660 2.5768 -0.0139 33 1 6.0876 -0.1419 -0.0005 34 1 9.4590 2.6892 -0.9238 35 1 9.4681 2.6999 0.8561 36 1 10.9112 1.2012 2.0999 37 1 12.9846 -0.1246 2.1014 38 1 17.0203 -3.2161 -2.5129 39 1 12.9619 -0.1478 -2.1748 40 1 10.8823 1.1681 -2.1657 41 1 4.3909 -1.4132 0.0082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733418813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:27 Heat of formation + Delta-G solvation = 11.924266 kcal Electronic energy + Delta-G solvation = -24930.672120 eV Core-core repulsion = 20972.095808 eV Total energy + Delta-G solvation = -3958.576313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65085 -40.41224 -39.18833 -37.21566 -36.14753 -34.81174 -33.06800 -32.47448 -30.87117 -30.30900 -30.10984 -27.51211 -26.27206 -24.95052 -23.82569 -22.13642 -21.80060 -21.18168 -20.51048 -19.45037 -17.95025 -17.92221 -17.36636 -17.13080 -16.41617 -16.21071 -16.02469 -14.97843 -14.87032 -14.79845 -14.16073 -14.07674 -13.88635 -13.82577 -13.57680 -13.41781 -13.08998 -13.01510 -12.81721 -12.68382 -12.28685 -12.23382 -12.12813 -11.43517 -11.09384 -10.99202 -10.80169 -10.76764 -10.72050 -10.43504 -10.35011 -10.16644 -10.04940 -9.42327 -8.90809 -8.40783 -8.30446 -7.43093 -6.45358 -4.12030 0.46331 1.48322 1.89938 1.97036 2.10622 2.42606 3.16490 3.22076 3.22497 3.25736 3.38856 3.93834 4.20468 4.21032 4.44730 4.51746 4.55332 4.68456 4.79797 4.81418 4.90146 5.06485 5.08671 5.13998 5.23891 5.26391 5.31043 5.60612 5.64719 5.73806 5.98382 6.05807 6.09353 6.15014 6.28680 6.35447 6.51014 6.63655 6.74322 6.98166 7.12880 7.17947 7.24818 7.55375 7.76131 7.93270 7.99305 8.89375 9.50387 10.61859 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.001747 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.837512 B =16025.376973 C =16716.665210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.366 5.366 3 C 0.092 3.908 4 C -0.240 4.240 5 C 0.050 3.950 6 C -0.222 4.222 7 C 0.500 3.500 8 O -0.529 6.529 9 O -0.343 6.343 10 C 0.127 3.873 11 C -0.193 4.193 12 C -0.051 4.051 13 C -0.195 4.195 14 C 0.168 3.832 15 O -0.213 6.213 16 C -0.391 4.391 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.876 5.876 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.225 4.225 25 C -0.047 4.047 26 C 0.081 3.919 27 N -0.299 5.299 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.185 0.815 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.280 0.720 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.586 7.843 5.427 31.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.144 5.144 3 C -0.058 4.058 4 C -0.251 4.251 5 C 0.030 3.970 6 C -0.242 4.242 7 C 0.349 3.651 8 O -0.422 6.422 9 O -0.260 6.260 10 C 0.054 3.946 11 C -0.194 4.194 12 C -0.070 4.070 13 C -0.215 4.215 14 C 0.115 3.885 15 O -0.117 6.117 16 C -0.466 4.466 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.513 5.513 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.244 4.244 25 C -0.066 4.066 26 C -0.106 4.106 27 N -0.119 5.119 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.202 0.798 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.090 0.910 39 H 0.153 0.847 40 H 0.130 0.870 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -30.236 6.951 5.476 31.505 hybrid contribution 1.031 0.474 0.351 1.188 sum -29.205 7.425 5.827 30.692 Atomic orbital electron populations 1.21992 0.73538 1.05031 1.03906 1.48430 1.07255 1.03952 1.54778 1.23203 0.90560 0.93718 0.98343 1.19405 0.92366 0.93263 1.20066 1.21639 0.89445 0.98931 0.86974 1.21026 0.90148 1.01032 1.12039 1.19904 0.84595 0.87162 0.73434 1.90854 1.87962 1.15940 1.47494 1.86352 1.14496 1.41681 1.83431 1.21277 0.81012 0.90375 1.01969 1.18973 0.97166 1.09262 0.93952 1.20517 0.94221 0.95620 0.96624 1.20188 0.98675 1.06488 0.96112 1.19179 0.85549 0.90315 0.93437 1.83572 1.33370 1.60758 1.34031 1.20797 1.13664 1.29315 0.82870 0.87478 1.24481 0.96083 0.95176 0.98191 1.69642 1.25045 1.32937 1.23702 0.86175 0.78228 0.79841 0.82638 1.19808 1.20723 1.18319 1.21261 0.98835 1.05436 0.98837 1.20679 0.94358 0.95012 0.96522 1.24284 0.95135 0.94378 0.96829 1.77217 1.02166 1.07722 1.24766 0.90212 0.89035 0.88821 0.79762 0.84611 0.84559 0.91444 0.91460 0.86694 0.86235 0.90954 0.84671 0.87021 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.22 11.44 59.85 0.68 0.90 16 2 N -0.37 -2.40 3.98 -67.49 -0.27 -2.67 16 3 C 0.09 0.53 11.52 -16.40 -0.19 0.34 16 4 C -0.24 -1.88 6.08 -105.13 -0.64 -2.52 16 5 C 0.05 0.43 9.64 -37.16 -0.36 0.07 16 6 C -0.22 -2.32 9.47 -39.40 -0.37 -2.70 16 7 C 0.50 6.88 7.69 32.01 0.25 7.13 16 8 O -0.53 -8.26 15.88 -19.40 -0.31 -8.57 16 9 O -0.34 -5.23 10.09 -41.18 -0.42 -5.65 16 10 C 0.13 1.92 5.50 36.00 0.20 2.12 16 11 C -0.19 -3.33 5.51 -104.57 -0.58 -3.91 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 13 C -0.20 -3.85 9.99 -39.40 -0.39 -4.25 16 14 C 0.17 3.86 6.65 -39.11 -0.26 3.60 16 15 O -0.21 -5.57 8.59 0.05 0.00 -5.57 16 16 C -0.39 -10.92 9.95 30.89 0.31 -10.62 16 17 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 18 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 19 N -0.88 -25.06 13.96 55.48 0.77 -24.29 16 20 Si 0.91 21.48 28.62 -169.99 -4.86 16.61 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.22 -4.83 9.17 -39.40 -0.36 -5.19 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 26 C 0.08 0.69 11.39 -16.92 -0.19 0.50 16 27 N -0.30 -2.81 12.49 30.89 0.39 -2.43 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.19 0.36 8.06 -52.49 -0.42 -0.07 16 32 H 0.14 1.10 7.45 -52.49 -0.39 0.71 16 33 H 0.14 1.22 6.93 -52.49 -0.36 0.86 16 34 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.07 0.95 8.07 -51.92 -0.42 0.53 16 36 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.14 3.03 5.64 -52.48 -0.30 2.73 16 40 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.19 1.25 7.31 -52.48 -0.38 0.87 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -34.17 367.67 -6.58 -40.74 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.65 Total: 1.63 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.77 Total: -15.35 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.89 Total: -29.39 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.72 Total: -19.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.86 Total: 16.61 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.17 -6.58 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733418813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.669 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds