Wall clock time and date at job start Tue Mar 31 2020 16:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34383 * 125.73681 * 2 1 4 4 C 1.38321 * 107.36086 * 180.15850 * 3 2 1 5 5 C 1.46917 * 126.44496 * 179.83385 * 4 3 2 6 6 C 1.35170 * 119.99704 * 179.71088 * 5 4 3 7 7 C 1.41582 * 119.99824 * 179.72742 * 6 5 4 8 8 O 1.21672 * 120.00102 * 0.27285 * 7 6 5 9 9 O 1.34949 * 120.00157 * 180.27520 * 7 6 5 10 10 C 1.42895 * 117.00352 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47488 * 180.02562 * 10 9 7 12 12 C 1.38309 * 119.93039 * 269.73408 * 11 10 9 13 13 C 1.38097 * 120.06854 * 179.72707 * 12 11 10 14 14 C 1.38877 * 119.92730 * 0.55902 * 13 12 11 15 15 O 1.35751 * 120.06900 * 179.68594 * 14 13 12 16 16 C 1.34830 * 117.00623 * 174.48961 * 15 14 13 17 17 H 1.08000 * 119.99502 * 5.05743 * 16 15 14 18 18 C 1.38653 * 120.00792 * 185.05987 * 16 15 14 19 19 N 1.31554 * 120.00437 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99623 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47149 * 89.99872 * 20 18 16 22 22 H 1.48497 * 109.47184 * 210.00220 * 20 18 16 23 23 H 1.48502 * 109.47447 * 330.00446 * 20 18 16 24 24 C 1.38880 * 119.86612 * 359.71274 * 14 13 12 25 25 C 1.38093 * 119.93045 * 359.97438 * 24 14 13 26 26 C 1.41451 * 107.10447 * 359.57031 * 4 3 2 27 27 N 1.30428 * 108.03468 * 0.26657 * 26 4 3 28 28 H 1.08993 * 109.46870 * 270.29213 * 1 2 3 29 29 H 1.08995 * 109.46942 * 30.29484 * 1 2 3 30 30 H 1.09002 * 109.46258 * 150.29178 * 1 2 3 31 31 H 1.08001 * 126.31911 * 0.02639 * 3 2 1 32 32 H 1.08000 * 120.00457 * 359.71846 * 5 4 3 33 33 H 1.08000 * 119.99840 * 0.02562 * 6 5 4 34 34 H 1.08998 * 109.47639 * 300.00803 * 10 9 7 35 35 H 1.09012 * 109.46710 * 59.99936 * 10 9 7 36 36 H 1.08002 * 119.96405 * 359.97031 * 12 11 10 37 37 H 1.08001 * 120.03739 * 180.27406 * 13 12 11 38 38 H 0.96996 * 119.99821 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.03530 * 179.97438 * 24 14 13 40 40 H 1.08000 * 119.96932 * 179.97438 * 25 24 14 41 41 H 1.08005 * 125.98172 * 180.28233 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2499 1.0908 0.0000 4 6 3.5626 0.6547 -0.0037 5 6 4.7634 1.5012 -0.0084 6 6 5.9902 0.9337 -0.0057 7 6 7.1474 1.7493 -0.0161 8 8 7.0376 2.9611 -0.0225 9 8 8.3723 1.1828 -0.0191 10 6 9.4956 2.0660 -0.0303 11 6 10.7686 1.2596 -0.0327 12 6 11.3612 0.9019 1.1648 13 6 12.5248 0.1582 1.1660 14 6 13.1062 -0.2206 -0.0369 15 8 14.2535 -0.9463 -0.0391 16 6 14.7027 -1.3778 -1.2349 17 1 14.2008 -1.0743 -2.1418 18 6 15.8088 -2.2113 -1.3005 19 7 16.2467 -2.6327 -2.4672 20 14 16.6773 -2.7357 0.2680 21 1 16.0700 -3.9931 0.7734 22 1 18.1176 -2.9604 -0.0151 23 1 16.5346 -1.6705 1.2928 24 6 12.5119 0.1449 -1.2377 25 6 11.3448 0.8832 -1.2323 26 6 3.5312 -0.7594 0.0043 27 7 2.2824 -1.1356 0.0063 28 1 -0.3633 0.0052 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3632 -0.8927 -0.5093 31 1 1.9172 2.1183 0.0004 32 1 4.6660 2.5768 -0.0139 33 1 6.0876 -0.1419 -0.0005 34 1 9.4590 2.6892 -0.9238 35 1 9.4681 2.6999 0.8561 36 1 10.9112 1.2012 2.0999 37 1 12.9846 -0.1246 2.1014 38 1 17.0203 -3.2161 -2.5129 39 1 12.9619 -0.1478 -2.1748 40 1 10.8823 1.1681 -2.1657 41 1 4.3909 -1.4132 0.0082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733418813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:26 Heat of formation + Delta-G solvation = -8.084963 kcal Electronic energy + Delta-G solvation = -24931.539786 eV Core-core repulsion = 20972.095808 eV Total energy + Delta-G solvation = -3959.443978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.18274 -41.52525 -40.85141 -38.71279 -37.44031 -35.45080 -34.49901 -33.62290 -32.27443 -31.85710 -30.82704 -28.26434 -27.62675 -26.43028 -24.79837 -23.74827 -22.45882 -22.09665 -21.77655 -20.21704 -19.85399 -19.15996 -18.83292 -17.70368 -17.49334 -17.39954 -16.59213 -16.44306 -16.18527 -15.78381 -15.66979 -15.44789 -15.32188 -14.71211 -14.53915 -14.48403 -14.27999 -14.08309 -13.82397 -13.76066 -13.63564 -13.26354 -13.09762 -13.01487 -12.63759 -12.50290 -12.27910 -11.94793 -11.66167 -11.57610 -11.53112 -11.43955 -11.27463 -10.91451 -10.55678 -9.85704 -9.13687 -9.02289 -8.50689 -6.24025 -0.24573 0.42603 0.53192 0.93327 1.32691 1.36374 1.52929 1.54565 1.68233 2.07423 2.28234 2.42627 2.78988 3.02815 3.14320 3.50169 3.83281 3.85408 3.92725 4.06389 4.12654 4.17014 4.22008 4.31388 4.37921 4.43907 4.50320 4.55257 4.65213 4.69193 4.72828 4.73524 4.90993 5.19149 5.26638 5.30980 5.42529 5.49204 5.51592 5.61608 5.66770 5.76491 5.86298 5.96310 6.17063 6.58896 6.83061 6.89076 7.54854 8.60541 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.001747 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.837512 B =16025.376973 C =16716.665210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.367 5.367 3 C 0.116 3.884 4 C -0.270 4.270 5 C 0.088 3.912 6 C -0.257 4.257 7 C 0.503 3.497 8 O -0.555 6.555 9 O -0.356 6.356 10 C 0.128 3.872 11 C -0.172 4.172 12 C -0.044 4.044 13 C -0.192 4.192 14 C 0.131 3.869 15 O -0.239 6.239 16 C -0.403 4.403 17 H 0.082 0.918 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.261 1.261 24 C -0.239 4.239 25 C -0.050 4.050 26 C 0.073 3.927 27 N -0.340 5.340 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.228 0.772 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.285 0.715 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.003 9.542 7.414 35.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.144 5.144 3 C -0.036 4.036 4 C -0.281 4.281 5 C 0.068 3.932 6 C -0.277 4.277 7 C 0.354 3.646 8 O -0.450 6.450 9 O -0.273 6.273 10 C 0.054 3.946 11 C -0.172 4.172 12 C -0.062 4.062 13 C -0.211 4.211 14 C 0.081 3.919 15 O -0.147 6.147 16 C -0.479 4.479 17 H 0.100 0.900 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.258 4.258 25 C -0.068 4.068 26 C -0.114 4.114 27 N -0.160 5.160 28 H 0.110 0.890 29 H 0.142 0.858 30 H 0.109 0.891 31 H 0.245 0.755 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.174 0.826 37 H 0.154 0.846 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -33.715 8.653 7.468 35.600 hybrid contribution 1.536 0.162 -0.247 1.564 sum -32.179 8.815 7.221 34.137 Atomic orbital electron populations 1.22371 0.71216 1.06536 1.05216 1.48836 1.08645 1.03489 1.53439 1.23888 0.89640 0.95198 0.94873 1.19487 0.93088 0.92958 1.22606 1.21749 0.89066 0.99321 0.83095 1.20958 0.89579 1.01213 1.15909 1.20305 0.84471 0.87178 0.72622 1.90837 1.87979 1.16829 1.49329 1.86319 1.15093 1.41889 1.83969 1.21233 0.80076 0.89966 1.03290 1.19350 0.97550 1.06909 0.93435 1.20972 0.92906 0.93941 0.98359 1.20516 0.99066 1.05975 0.95517 1.19729 0.85741 0.91166 0.95222 1.83520 1.35438 1.63052 1.32644 1.20729 1.14092 1.29924 0.83119 0.90005 1.25292 0.96773 0.95254 1.01393 1.69726 1.26216 1.34533 1.25574 0.85214 0.77688 0.79297 0.78503 1.19058 1.19174 1.18570 1.21265 1.00135 1.06624 0.97810 1.20933 0.93216 0.94185 0.98432 1.24544 0.95336 0.95175 0.96299 1.77170 1.02833 1.09674 1.26308 0.88987 0.85819 0.89104 0.75529 0.83765 0.83767 0.90711 0.89774 0.82642 0.84600 0.90496 0.86896 0.84720 0.78345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.13 11.44 127.77 1.46 1.59 16 2 N -0.37 -3.82 3.98 -367.44 -1.46 -5.28 16 3 C 0.12 0.91 11.52 84.32 0.97 1.89 16 4 C -0.27 -3.61 6.08 -20.19 -0.12 -3.74 16 5 C 0.09 1.32 9.64 23.84 0.23 1.55 16 6 C -0.26 -4.98 9.47 22.39 0.21 -4.77 16 7 C 0.50 12.98 7.69 68.65 0.53 13.50 16 8 O -0.55 -16.25 15.88 19.27 0.31 -15.94 16 9 O -0.36 -10.11 10.09 -58.66 -0.59 -10.71 16 10 C 0.13 3.51 5.50 71.23 0.39 3.90 16 11 C -0.17 -5.53 5.51 -19.83 -0.11 -5.64 16 12 C -0.04 -1.39 9.69 22.25 0.22 -1.17 16 13 C -0.19 -7.31 9.99 22.39 0.22 -7.09 16 14 C 0.13 6.16 6.65 22.58 0.15 6.31 16 15 O -0.24 -13.01 8.59 -22.75 -0.20 -13.20 16 16 C -0.40 -23.76 9.95 67.92 0.68 -23.08 16 17 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 18 C 0.01 0.68 5.49 84.83 0.47 1.14 16 19 N -0.92 -54.95 13.96 21.61 0.30 -54.64 16 20 Si 0.97 45.31 28.62 68.60 1.96 47.28 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 24 C -0.24 -10.65 9.17 22.39 0.21 -10.45 16 25 C -0.05 -1.79 9.69 22.25 0.22 -1.58 16 26 C 0.07 1.16 11.39 85.69 0.98 2.14 16 27 N -0.34 -5.97 12.49 -56.17 -0.70 -6.67 16 28 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.23 -0.35 8.06 -2.91 -0.02 -0.38 16 32 H 0.14 1.91 7.45 -2.91 -0.02 1.88 16 33 H 0.14 2.46 6.93 -2.91 -0.02 2.44 16 34 H 0.07 1.97 8.07 -2.39 -0.02 1.95 16 35 H 0.08 2.07 8.07 -2.38 -0.02 2.05 16 36 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.29 15.61 8.31 -92.71 -0.77 14.83 16 39 H 0.11 5.49 5.64 -2.91 -0.02 5.47 16 40 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.20 2.53 7.31 -2.91 -0.02 2.51 16 Total: -1.00 -77.82 367.67 7.37 -70.44 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.06 Total: 14.23 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 6.69 Total: -25.50 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -1.86 Total: -66.60 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.48 Total: -39.85 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.96 Total: 47.28 kcal Total: -77.82 7.37 -70.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733418813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.359 kcal (2) G-P(sol) polarization free energy of solvation -77.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds