Wall clock time and date at job start Tue Mar 31 2020 16:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47111 * 2 1 4 4 C 1.50693 * 109.47200 * 239.99956 * 2 1 3 5 5 H 1.08007 * 120.00237 * 274.99083 * 4 2 1 6 6 C 1.37880 * 120.00132 * 94.99866 * 4 2 1 7 7 N 1.31519 * 120.00083 * 184.91818 * 6 4 2 8 8 Si 1.86793 * 119.99854 * 4.90896 * 6 4 2 9 9 H 1.48504 * 109.46866 * 84.84123 * 8 6 4 10 10 H 1.48506 * 109.47215 * 204.83457 * 8 6 4 11 11 H 1.48497 * 109.47497 * 324.83838 * 8 6 4 12 12 O 1.45202 * 109.47432 * 119.99551 * 2 1 3 13 13 C 1.34687 * 117.00224 * 270.00295 * 12 2 1 14 14 O 1.21434 * 119.99933 * 359.97438 * 13 12 2 15 15 C 1.47957 * 119.99781 * 179.97438 * 13 12 2 16 16 C 1.40047 * 119.75934 * 359.72955 * 15 13 12 17 17 C 1.36585 * 120.55216 * 179.80448 * 16 15 13 18 18 C 1.39344 * 119.85628 * 0.45635 * 17 16 15 19 19 C 1.41223 * 120.32849 * 359.75250 * 18 17 16 20 20 C 1.38977 * 119.75501 * 179.97438 * 15 13 12 21 21 N 1.35317 * 118.90630 * 180.09482 * 19 18 17 22 22 C 1.30647 * 122.50080 * 359.97313 * 21 19 18 23 23 N 1.36019 * 122.43875 * 359.82573 * 22 21 19 24 24 C 1.35791 * 120.53667 * 0.26904 * 23 22 21 25 25 O 1.21702 * 121.02875 * 179.82097 * 24 23 22 26 26 C 1.47283 * 110.99390 * 180.29963 * 23 22 21 27 27 C 1.54259 * 105.59617 * 342.47985 * 26 23 22 28 28 C 1.52018 * 128.06988 * 179.77962 * 22 21 19 29 29 H 1.09001 * 109.47033 * 295.03037 * 1 2 3 30 30 H 1.08995 * 109.47489 * 55.03479 * 1 2 3 31 31 H 1.09004 * 109.46761 * 175.03656 * 1 2 3 32 32 H 0.96998 * 120.00218 * 179.97438 * 7 6 4 33 33 H 1.07997 * 119.72307 * 0.02562 * 16 15 13 34 34 H 1.08003 * 120.07128 * 180.24926 * 17 16 15 35 35 H 1.08002 * 120.27830 * 359.97077 * 20 15 13 36 36 H 1.08992 * 110.22832 * 223.45004 * 26 23 22 37 37 H 1.09000 * 110.22057 * 101.50517 * 26 23 22 38 38 H 1.08995 * 110.95583 * 268.24548 * 27 26 23 39 39 H 1.09000 * 110.98588 * 144.52494 * 27 26 23 40 40 H 1.09004 * 110.45004 * 315.63288 * 28 22 21 41 41 H 1.08992 * 110.45121 * 78.05097 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6132 -3.4622 8 14 2.3133 1.8790 -2.3175 9 1 3.5989 2.3949 -1.7823 10 1 2.1054 2.3990 -3.6929 11 1 1.1984 2.3274 -1.4451 12 8 2.0141 -0.6844 1.1856 13 6 2.2179 0.0667 2.2849 14 8 1.9978 1.2605 2.2539 15 6 2.7099 -0.5629 3.5301 16 6 2.9567 -1.9411 3.5618 17 6 3.4149 -2.5383 4.7015 18 6 3.6306 -1.7742 5.8466 19 6 3.3827 -0.3840 5.8333 20 6 2.9190 0.2170 4.6613 21 7 3.6039 0.3307 6.9609 22 6 4.0384 -0.2165 8.0649 23 7 4.2986 -1.5477 8.1661 24 6 4.1171 -2.3692 7.1002 25 8 4.3501 -3.5610 7.1799 26 6 4.7675 -1.8923 9.5191 27 6 5.2047 -0.5584 10.1588 28 6 4.3328 0.4604 9.3938 29 1 -0.3633 0.4348 0.9312 30 1 -0.3634 0.5889 -0.8421 31 1 -0.3633 -1.0239 -0.0889 32 1 2.9362 -0.1049 -4.2556 33 1 2.7866 -2.5360 2.6767 34 1 3.6064 -3.6011 4.7161 35 1 2.7243 1.2790 4.6342 36 1 5.6131 -2.5776 9.4618 37 1 3.9578 -2.3392 10.0960 38 1 6.2646 -0.3720 9.9857 39 1 4.9771 -0.5436 11.2247 40 1 4.8823 1.3883 9.2351 41 1 3.4072 0.6548 9.9355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:42 Heat of formation + Delta-G solvation = -88.861435 kcal Electronic energy + Delta-G solvation = -26809.212031 eV Core-core repulsion = 22846.265322 eV Total energy + Delta-G solvation = -3962.946709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -43.00384 -41.55948 -39.86498 -39.31076 -37.70727 -36.42134 -35.18976 -33.50596 -32.86138 -32.37087 -31.28938 -28.54634 -27.49560 -26.80258 -24.74324 -23.86092 -23.00806 -22.47916 -21.89837 -20.22181 -19.86306 -19.05170 -18.50058 -18.03022 -17.79923 -17.19724 -16.98722 -16.44534 -16.28187 -16.10434 -15.72991 -15.19236 -14.95117 -14.91670 -14.81658 -14.59530 -14.44399 -14.00029 -13.90715 -13.78756 -13.57166 -13.13418 -13.12071 -12.97316 -12.91021 -12.60748 -12.45545 -12.01073 -11.88808 -11.73810 -11.59601 -11.46635 -11.22169 -11.07186 -11.01649 -10.89418 -10.52717 -9.26895 -8.48125 -6.58208 -1.05862 -0.54061 0.83338 1.01429 1.23572 1.24987 1.29351 1.39335 1.65201 1.83096 2.19117 2.50605 2.69388 2.86418 2.91615 3.33963 3.46012 3.54261 3.58804 3.85373 3.91538 3.97055 4.09648 4.18981 4.32417 4.49794 4.56302 4.56719 4.56973 4.64246 4.66089 4.85122 4.86849 4.92562 5.03391 5.06271 5.11115 5.18086 5.27000 5.29845 5.35308 5.45551 5.52020 6.09660 6.37458 6.50643 6.69211 6.74404 7.08977 8.66928 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.026222 B = 0.002593 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.543664 B =10796.277794 C =11341.775780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.051 0.949 6 C 0.036 3.964 7 N -0.921 5.921 8 Si 0.926 3.074 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.248 1.248 12 O -0.347 6.347 13 C 0.494 3.506 14 O -0.535 6.535 15 C -0.075 4.075 16 C -0.087 4.087 17 C -0.043 4.043 18 C -0.192 4.192 19 C 0.158 3.842 20 C -0.053 4.053 21 N -0.548 5.548 22 C 0.391 3.609 23 N -0.557 5.557 24 C 0.552 3.448 25 O -0.537 6.537 26 C 0.080 3.920 27 C -0.113 4.113 28 C -0.070 4.070 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.277 0.723 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 1.848 32.897 33.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.166 4.166 7 N -0.559 5.559 8 Si 0.749 3.251 9 H -0.195 1.195 10 H -0.191 1.191 11 H -0.172 1.172 12 O -0.263 6.263 13 C 0.340 3.660 14 O -0.427 6.427 15 C -0.078 4.078 16 C -0.105 4.105 17 C -0.062 4.062 18 C -0.198 4.198 19 C 0.048 3.952 20 C -0.072 4.072 21 N -0.270 5.270 22 C 0.126 3.874 23 N -0.280 5.280 24 C 0.346 3.654 25 O -0.413 6.413 26 C -0.039 4.039 27 C -0.151 4.151 28 C -0.109 4.109 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.256 2.121 32.437 32.783 hybrid contribution 0.100 -0.309 -1.192 1.235 sum 4.357 1.812 31.245 31.599 Atomic orbital electron populations 1.22155 0.95074 1.02438 1.00887 1.20930 0.93205 0.93130 0.79882 0.94249 1.20893 1.46008 0.95015 0.94825 0.93078 1.25658 0.93002 1.03284 0.94630 1.69952 1.45106 1.38283 1.02519 0.86051 0.80271 0.80059 0.78717 1.19483 1.19054 1.17194 1.86677 1.75849 1.43132 1.20631 1.21606 0.74307 0.85113 0.84991 1.90736 1.49874 1.17040 1.85087 1.19299 1.02561 0.94989 0.90910 1.21289 0.96848 0.92880 0.99531 1.20796 0.94463 1.01203 0.89781 1.20853 1.08284 0.95000 0.95679 1.18367 0.95798 0.88723 0.92277 1.20898 0.96417 1.01043 0.88843 1.67811 1.24214 1.36777 0.98185 1.25233 0.84908 0.81545 0.95683 1.47701 1.56699 1.09576 1.14020 1.18355 0.77859 0.85877 0.83322 1.90831 1.51618 1.15018 1.83855 1.22938 1.01942 1.01269 0.77782 1.22761 1.01082 0.88852 1.02369 1.21761 1.04246 1.00002 0.84862 0.93334 0.91385 0.91751 0.91391 0.82695 0.82378 0.82963 0.88809 0.87637 0.88388 0.83933 0.85209 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.46 9.53 71.98 0.69 -5.78 16 2 C 0.18 9.17 2.22 29.85 0.07 9.24 16 3 H 0.04 2.06 4.31 -2.39 -0.01 2.05 16 4 C -0.53 -30.70 9.25 25.60 0.24 -30.46 16 5 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 6 C 0.04 2.05 5.47 84.65 0.46 2.51 16 7 N -0.92 -55.71 13.96 21.45 0.30 -55.42 16 8 Si 0.93 44.06 26.99 68.60 1.85 45.91 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.25 -11.27 6.82 99.48 0.68 -10.59 16 12 O -0.35 -16.21 9.08 -55.96 -0.51 -16.72 16 13 C 0.49 20.83 7.87 70.40 0.55 21.38 16 14 O -0.54 -24.47 15.57 20.05 0.31 -24.15 16 15 C -0.08 -2.58 5.87 -20.09 -0.12 -2.69 16 16 C -0.09 -2.63 9.54 22.32 0.21 -2.42 16 17 C -0.04 -1.19 9.61 22.15 0.21 -0.98 16 18 C -0.19 -5.38 5.90 -19.97 -0.12 -5.50 16 19 C 0.16 4.48 6.63 39.68 0.26 4.74 16 20 C -0.05 -1.64 9.58 22.79 0.22 -1.42 16 21 N -0.55 -13.00 10.34 -178.16 -1.84 -14.84 16 22 C 0.39 6.27 7.95 138.19 1.10 7.37 16 23 N -0.56 -9.81 3.11 -625.90 -1.94 -11.76 16 24 C 0.55 14.37 7.84 86.39 0.68 15.04 16 25 O -0.54 -16.32 17.16 -4.35 -0.07 -16.40 16 26 C 0.08 0.58 7.23 86.66 0.63 1.21 16 27 C -0.11 0.11 7.15 31.49 0.23 0.34 16 28 C -0.07 -0.22 6.85 30.74 0.21 -0.01 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.16 4.62 7.57 -2.91 -0.02 4.59 16 34 H 0.16 3.85 7.81 -2.91 -0.02 3.83 16 35 H 0.15 4.73 7.62 -2.91 -0.02 4.70 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.14 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.14 -0.14 8.14 -2.39 -0.02 -0.15 16 Total: -1.00 -78.87 352.67 4.66 -74.22 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.05 Total: 6.56 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.52 Total: 12.59 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -3.49 Total: -82.01 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -0.27 Total: -57.27 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.85 Total: 45.91 kcal Total: -78.87 4.66 -74.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.644 kcal (2) G-P(sol) polarization free energy of solvation -78.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds