Wall clock time and date at job start Tue Mar 31 2020 16:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46762 * 124.35014 * 2 1 4 4 C 1.54477 * 105.47639 * 197.03690 * 3 2 1 5 5 C 1.54783 * 101.69359 * 334.38866 * 4 3 2 6 6 H 1.08998 * 110.61580 * 266.40494 * 5 4 3 7 7 O 1.45197 * 110.42910 * 143.70835 * 5 4 3 8 8 C 1.34866 * 117.00080 * 159.51557 * 7 5 4 9 9 O 1.21590 * 119.99716 * 3.25300 * 8 7 5 10 10 C 1.46716 * 120.00352 * 183.24944 * 8 7 5 11 11 C 1.36209 * 125.44824 * 178.92432 * 10 8 7 12 12 C 1.41657 * 107.74403 * 180.02562 * 11 10 8 13 13 C 1.40045 * 133.34412 * 180.02562 * 12 11 10 14 14 C 1.36571 * 119.83343 * 179.97438 * 13 12 11 15 15 C 1.38864 * 120.59934 * 0.02988 * 14 13 12 16 16 C 1.37838 * 120.63962 * 359.97438 * 15 14 13 17 17 C 1.39089 * 119.81616 * 359.96648 * 16 15 14 18 18 N 1.37832 * 133.15033 * 180.39069 * 17 16 15 19 19 C 1.36871 * 125.61759 * 359.97438 * 18 17 16 20 20 H 1.08007 * 119.99361 * 135.21756 * 19 18 17 21 21 C 1.39011 * 120.00435 * 315.21335 * 19 18 17 22 22 N 1.31342 * 120.00305 * 158.97506 * 21 19 18 23 23 Si 1.86809 * 120.00138 * 338.97910 * 21 19 18 24 24 H 1.48493 * 109.47072 * 95.68941 * 23 21 19 25 25 H 1.48493 * 109.47235 * 215.69056 * 23 21 19 26 26 H 1.48497 * 109.46742 * 335.69116 * 23 21 19 27 27 C 1.34423 * 124.35302 * 180.02562 * 2 1 3 28 28 O 1.21280 * 124.94075 * 359.53815 * 27 2 1 29 29 H 1.09004 * 109.46660 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47278 * 300.00229 * 1 2 3 31 31 H 1.08996 * 109.46903 * 60.00852 * 1 2 3 32 32 H 1.09007 * 110.24216 * 316.03641 * 3 2 1 33 33 H 1.08999 * 110.25036 * 78.03171 * 3 2 1 34 34 H 1.09007 * 110.97292 * 92.69728 * 4 3 2 35 35 H 1.09002 * 110.97254 * 216.46380 * 4 3 2 36 36 H 1.08001 * 126.13517 * 0.02665 * 11 10 8 37 37 H 1.07994 * 120.08025 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.69888 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.68305 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.09394 * 179.97438 * 16 15 14 41 41 H 0.97003 * 120.00422 * 185.04984 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 -0.4362 5 6 3.6899 -0.7377 -0.0052 6 1 4.1155 -0.8514 0.9918 7 8 4.4169 -1.5491 -0.9651 8 6 4.8598 -2.7502 -0.5406 9 8 4.5932 -3.1344 0.5817 10 6 5.6631 -3.5932 -1.4332 11 6 6.1829 -4.8110 -1.1136 12 6 6.8884 -5.2895 -2.2450 13 6 7.6125 -6.4604 -2.5017 14 6 8.1965 -6.6442 -3.7225 15 6 8.0800 -5.6793 -4.7143 16 6 7.3725 -4.5186 -4.4855 17 6 6.7678 -4.3093 -3.2505 18 7 6.0080 -3.2813 -2.7351 19 6 5.6570 -2.1382 -3.4010 20 1 4.6430 -1.7705 -3.3450 21 6 6.6055 -1.4504 -4.1492 22 7 6.2225 -0.6263 -5.0974 23 14 8.4250 -1.6984 -3.8060 24 1 8.9696 -2.7191 -4.7369 25 1 9.1452 -0.4148 -4.0024 26 1 8.6063 -2.1585 -2.4058 27 6 2.2235 -1.1098 -0.0005 28 8 1.7947 -2.2442 0.0070 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8981 1.9384 -0.7100 33 1 2.3309 1.6428 1.0004 34 1 3.8265 0.8450 -1.5147 35 1 4.4754 1.3011 0.0960 36 1 6.0764 -5.3205 -0.1673 37 1 7.7089 -7.2161 -1.7362 38 1 8.7548 -7.5478 -3.9180 39 1 8.5481 -5.8397 -5.6742 40 1 7.2878 -3.7739 -5.2630 41 1 6.8829 -0.2026 -5.6677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734895888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:18 Heat of formation + Delta-G solvation = -37.683422 kcal Electronic energy + Delta-G solvation = -28222.525591 eV Core-core repulsion = 24261.798127 eV Total energy + Delta-G solvation = -3960.727463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.93423 -40.49724 -38.92549 -36.41683 -36.24554 -35.75258 -33.57487 -32.20584 -31.39567 -29.34866 -28.57633 -27.31582 -26.59723 -24.90703 -23.81316 -21.87322 -21.16865 -20.87840 -19.63977 -19.19331 -18.34066 -17.45247 -16.94043 -16.60559 -15.96348 -15.78704 -15.26862 -15.16970 -14.80364 -14.41645 -13.92316 -13.83150 -13.59697 -13.31344 -13.16642 -13.09995 -12.99682 -12.77285 -12.50047 -12.30914 -12.15196 -12.06087 -12.00721 -11.44152 -11.19606 -11.08456 -11.01616 -10.90802 -10.52202 -10.27935 -10.07943 -9.92884 -9.47299 -9.41466 -8.80764 -8.74679 -7.42919 -7.03640 -6.90340 -4.57125 1.44570 2.39776 2.44859 2.66355 2.89524 2.98935 3.08241 3.19384 3.31306 3.85683 3.89520 4.09529 4.29133 4.38136 4.55814 4.74991 4.80318 4.87105 5.15743 5.18488 5.29706 5.34519 5.51946 5.60744 5.62448 5.69211 5.73581 5.85667 5.98574 6.14689 6.20846 6.36065 6.41047 6.55349 6.72340 6.79391 6.85399 6.97196 7.16942 7.22796 7.31880 7.55648 7.58172 7.84270 8.12494 8.16852 8.39705 8.67424 8.99603 10.09900 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.004480 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.043059 B = 6248.311446 C = 7359.871346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.625 5.625 3 C 0.107 3.893 4 C -0.125 4.125 5 C 0.056 3.944 6 H 0.116 0.884 7 O -0.304 6.304 8 C 0.544 3.456 9 O -0.509 6.509 10 C -0.009 4.009 11 C -0.152 4.152 12 C -0.126 4.126 13 C -0.075 4.075 14 C -0.158 4.158 15 C -0.131 4.131 16 C -0.097 4.097 17 C 0.060 3.940 18 N -0.258 5.258 19 C -0.341 4.341 20 H 0.128 0.872 21 C 0.087 3.913 22 N -0.822 5.822 23 Si 0.866 3.134 24 H -0.247 1.247 25 H -0.279 1.279 26 H -0.254 1.254 27 C 0.505 3.495 28 O -0.505 6.505 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 4.664 5.710 7.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.363 5.363 3 C -0.016 4.016 4 C -0.163 4.163 5 C -0.003 4.003 6 H 0.133 0.867 7 O -0.220 6.220 8 C 0.391 3.609 9 O -0.397 6.397 10 C -0.121 4.121 11 C -0.179 4.179 12 C -0.131 4.131 13 C -0.094 4.094 14 C -0.177 4.177 15 C -0.151 4.151 16 C -0.116 4.116 17 C -0.054 4.054 18 N 0.078 4.922 19 C -0.469 4.469 20 H 0.145 0.855 21 C -0.128 4.128 22 N -0.451 5.451 23 Si 0.690 3.310 24 H -0.172 1.172 25 H -0.205 1.205 26 H -0.178 1.178 27 C 0.291 3.709 28 O -0.379 6.379 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.158 0.842 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.326 4.545 5.773 8.065 hybrid contribution 0.663 0.282 0.123 0.731 sum -2.663 4.827 5.896 8.072 Atomic orbital electron populations 1.21548 0.77870 1.03849 1.01343 1.48025 1.06538 1.07299 1.74405 1.22108 0.89977 0.87551 1.02008 1.22777 0.96562 0.91623 1.05339 1.23257 0.89900 0.91554 0.95600 0.86675 1.87054 1.65109 1.29121 1.40670 1.20015 0.76129 0.79417 0.85328 1.90817 1.55776 1.72670 1.20438 1.19230 1.09416 0.98078 0.85396 1.20416 1.03524 0.95028 0.98909 1.17930 1.04571 0.96033 0.94537 1.20165 0.97245 0.95381 0.96621 1.20367 1.03669 0.99492 0.94134 1.20598 1.01446 0.94093 0.98989 1.20190 0.98546 0.98129 0.94751 1.18409 1.02283 0.89184 0.95533 1.40386 1.32766 1.12708 1.06344 1.19449 0.99103 1.00681 1.27629 0.85518 1.25464 1.00028 0.93685 0.93603 1.69650 1.36800 1.25257 1.13357 0.86939 0.83204 0.78725 0.82143 1.17175 1.20480 1.17781 1.21126 0.89399 0.84733 0.75662 1.90754 1.78070 1.20868 1.48173 0.89937 0.92141 0.91920 0.89644 0.90721 0.87469 0.88087 0.84184 0.87010 0.87170 0.86871 0.86326 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.99 11.14 59.85 0.67 1.65 16 2 N -0.63 -8.25 3.33 -180.29 -0.60 -8.85 16 3 C 0.11 1.01 7.35 -3.12 -0.02 0.99 16 4 C -0.13 -1.50 6.92 -25.02 -0.17 -1.67 16 5 C 0.06 0.95 3.12 -26.66 -0.08 0.87 16 6 H 0.12 1.82 7.52 -51.93 -0.39 1.43 16 7 O -0.30 -6.58 7.88 -43.86 -0.35 -6.93 16 8 C 0.54 12.77 7.66 34.15 0.26 13.03 16 9 O -0.51 -12.11 16.05 -19.44 -0.31 -12.42 16 10 C -0.01 -0.21 6.76 -82.28 -0.56 -0.77 16 11 C -0.15 -3.42 10.55 -39.01 -0.41 -3.83 16 12 C -0.13 -2.80 6.16 -106.89 -0.66 -3.46 16 13 C -0.08 -1.41 10.06 -39.51 -0.40 -1.81 16 14 C -0.16 -2.76 9.97 -39.95 -0.40 -3.16 16 15 C -0.13 -2.45 10.02 -39.50 -0.40 -2.85 16 16 C -0.10 -2.13 7.06 -39.41 -0.28 -2.41 16 17 C 0.06 1.45 5.18 -83.83 -0.43 1.01 16 18 N -0.26 -6.55 2.36 -56.10 -0.13 -6.68 16 19 C -0.34 -8.92 8.95 -15.02 -0.13 -9.05 16 20 H 0.13 3.53 7.29 -52.48 -0.38 3.14 16 21 C 0.09 2.19 4.85 -17.47 -0.08 2.10 16 22 N -0.82 -20.93 13.95 55.50 0.77 -20.16 16 23 Si 0.87 19.86 24.68 -169.99 -4.19 15.67 16 24 H -0.25 -5.42 5.89 56.52 0.33 -5.08 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.25 -6.22 7.11 56.52 0.40 -5.81 16 27 C 0.50 9.07 7.68 -10.86 -0.08 8.98 16 28 O -0.51 -11.29 16.91 1.18 0.02 -11.27 16 29 H 0.08 0.99 7.53 -51.93 -0.39 0.60 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.11 1.45 8.12 -51.93 -0.42 1.03 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 2.66 6.22 -52.49 -0.33 2.33 16 41 H 0.29 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -32.63 346.62 -7.67 -40.30 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.92 Total: 5.48 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.18 Total: -0.37 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.04 Total: -35.69 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.64 Total: -30.62 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.19 Total: 15.67 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.63 -7.67 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734895888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.621 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds