Wall clock time and date at job start Tue Mar 31 2020 16:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46762 * 124.35014 * 2 1 4 4 C 1.54477 * 105.47639 * 197.03690 * 3 2 1 5 5 C 1.54783 * 101.69359 * 334.38866 * 4 3 2 6 6 H 1.08998 * 110.61580 * 266.40494 * 5 4 3 7 7 O 1.45197 * 110.42910 * 143.70835 * 5 4 3 8 8 C 1.34866 * 117.00080 * 159.51557 * 7 5 4 9 9 O 1.21590 * 119.99716 * 3.25300 * 8 7 5 10 10 C 1.46716 * 120.00352 * 183.24944 * 8 7 5 11 11 C 1.36209 * 125.44824 * 178.92432 * 10 8 7 12 12 C 1.41657 * 107.74403 * 180.02562 * 11 10 8 13 13 C 1.40045 * 133.34412 * 180.02562 * 12 11 10 14 14 C 1.36571 * 119.83343 * 179.97438 * 13 12 11 15 15 C 1.38864 * 120.59934 * 0.02988 * 14 13 12 16 16 C 1.37838 * 120.63962 * 359.97438 * 15 14 13 17 17 C 1.39089 * 119.81616 * 359.96648 * 16 15 14 18 18 N 1.37832 * 133.15033 * 180.39069 * 17 16 15 19 19 C 1.36871 * 125.61759 * 359.97438 * 18 17 16 20 20 H 1.08007 * 119.99361 * 135.21756 * 19 18 17 21 21 C 1.39011 * 120.00435 * 315.21335 * 19 18 17 22 22 N 1.31342 * 120.00305 * 158.97506 * 21 19 18 23 23 Si 1.86809 * 120.00138 * 338.97910 * 21 19 18 24 24 H 1.48493 * 109.47072 * 95.68941 * 23 21 19 25 25 H 1.48493 * 109.47235 * 215.69056 * 23 21 19 26 26 H 1.48497 * 109.46742 * 335.69116 * 23 21 19 27 27 C 1.34423 * 124.35302 * 180.02562 * 2 1 3 28 28 O 1.21280 * 124.94075 * 359.53815 * 27 2 1 29 29 H 1.09004 * 109.46660 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47278 * 300.00229 * 1 2 3 31 31 H 1.08996 * 109.46903 * 60.00852 * 1 2 3 32 32 H 1.09007 * 110.24216 * 316.03641 * 3 2 1 33 33 H 1.08999 * 110.25036 * 78.03171 * 3 2 1 34 34 H 1.09007 * 110.97292 * 92.69728 * 4 3 2 35 35 H 1.09002 * 110.97254 * 216.46380 * 4 3 2 36 36 H 1.08001 * 126.13517 * 0.02665 * 11 10 8 37 37 H 1.07994 * 120.08025 * 359.97438 * 13 12 11 38 38 H 1.07995 * 119.69888 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.68305 * 179.97438 * 15 14 13 40 40 H 1.08000 * 120.09394 * 179.97438 * 16 15 14 41 41 H 0.97003 * 120.00422 * 185.04984 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 -0.4362 5 6 3.6899 -0.7377 -0.0052 6 1 4.1155 -0.8514 0.9918 7 8 4.4169 -1.5491 -0.9651 8 6 4.8598 -2.7502 -0.5406 9 8 4.5932 -3.1344 0.5817 10 6 5.6631 -3.5932 -1.4332 11 6 6.1829 -4.8110 -1.1136 12 6 6.8884 -5.2895 -2.2450 13 6 7.6125 -6.4604 -2.5017 14 6 8.1965 -6.6442 -3.7225 15 6 8.0800 -5.6793 -4.7143 16 6 7.3725 -4.5186 -4.4855 17 6 6.7678 -4.3093 -3.2505 18 7 6.0080 -3.2813 -2.7351 19 6 5.6570 -2.1382 -3.4010 20 1 4.6430 -1.7705 -3.3450 21 6 6.6055 -1.4504 -4.1492 22 7 6.2225 -0.6263 -5.0974 23 14 8.4250 -1.6984 -3.8060 24 1 8.9696 -2.7191 -4.7369 25 1 9.1452 -0.4148 -4.0024 26 1 8.6063 -2.1585 -2.4058 27 6 2.2235 -1.1098 -0.0005 28 8 1.7947 -2.2442 0.0070 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8981 1.9384 -0.7100 33 1 2.3309 1.6428 1.0004 34 1 3.8265 0.8450 -1.5147 35 1 4.4754 1.3011 0.0960 36 1 6.0764 -5.3205 -0.1673 37 1 7.7089 -7.2161 -1.7362 38 1 8.7548 -7.5478 -3.9180 39 1 8.5481 -5.8397 -5.6742 40 1 7.2878 -3.7739 -5.2630 41 1 6.8829 -0.2026 -5.6677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734895888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:16 Heat of formation + Delta-G solvation = -57.883217 kcal Electronic energy + Delta-G solvation = -28223.401519 eV Core-core repulsion = 24261.798127 eV Total energy + Delta-G solvation = -3961.603392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.59052 -41.92508 -40.50453 -37.87832 -37.78262 -37.34482 -35.42377 -33.31723 -33.14803 -30.95825 -30.21521 -28.48751 -27.64595 -26.75267 -25.39458 -22.98617 -22.83302 -22.46126 -21.18357 -20.70647 -20.11845 -19.07218 -18.22416 -18.04623 -17.55883 -17.31799 -16.75708 -16.70508 -16.27206 -16.08085 -15.55420 -15.21065 -14.96236 -14.91088 -14.70135 -14.64948 -14.35792 -14.19766 -13.92430 -13.72496 -13.45277 -13.22511 -13.19593 -13.03113 -12.88381 -12.70188 -12.51077 -12.29096 -12.11749 -11.98584 -11.84628 -11.55994 -11.30989 -10.83979 -10.48703 -9.85893 -9.11209 -8.83845 -8.69984 -6.51844 -0.24010 0.84700 0.96714 1.01802 1.17471 1.23108 1.33792 1.68734 1.94161 2.01999 2.12313 2.35676 2.71689 3.10152 3.11368 3.31838 3.59972 3.80980 3.95485 3.99622 4.24816 4.27348 4.28692 4.33272 4.53317 4.56028 4.60012 4.62233 4.73725 4.78874 4.83264 4.92022 5.00037 5.06256 5.22804 5.24656 5.38318 5.41831 5.66238 5.76297 5.80431 5.82073 5.91472 6.06712 6.36925 6.59623 6.81174 6.89232 7.15720 8.25303 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.004480 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.043059 B = 6248.311446 C = 7359.871346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.616 5.616 3 C 0.108 3.892 4 C -0.117 4.117 5 C 0.040 3.960 6 H 0.121 0.879 7 O -0.321 6.321 8 C 0.541 3.459 9 O -0.523 6.523 10 C -0.043 4.043 11 C -0.145 4.145 12 C -0.145 4.145 13 C -0.071 4.071 14 C -0.148 4.148 15 C -0.106 4.106 16 C -0.139 4.139 17 C 0.044 3.956 18 N -0.282 5.282 19 C -0.356 4.356 20 H 0.090 0.910 21 C 0.065 3.935 22 N -0.854 5.854 23 Si 0.913 3.087 24 H -0.228 1.228 25 H -0.265 1.265 26 H -0.281 1.281 27 C 0.489 3.511 28 O -0.567 6.567 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.106 0.894 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 4.255 5.828 7.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.351 5.351 3 C -0.013 4.013 4 C -0.154 4.154 5 C -0.019 4.019 6 H 0.139 0.861 7 O -0.236 6.236 8 C 0.388 3.612 9 O -0.414 6.414 10 C -0.154 4.154 11 C -0.172 4.172 12 C -0.149 4.149 13 C -0.090 4.090 14 C -0.167 4.167 15 C -0.126 4.126 16 C -0.159 4.159 17 C -0.069 4.069 18 N 0.052 4.948 19 C -0.483 4.483 20 H 0.108 0.892 21 C -0.147 4.147 22 N -0.484 5.484 23 Si 0.735 3.265 24 H -0.151 1.151 25 H -0.191 1.191 26 H -0.207 1.207 27 C 0.275 3.725 28 O -0.446 6.446 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.153 0.847 36 H 0.177 0.823 37 H 0.166 0.834 38 H 0.178 0.822 39 H 0.168 0.832 40 H 0.124 0.876 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.659 4.215 5.868 7.413 hybrid contribution 0.110 0.264 0.127 0.313 sum -1.549 4.479 5.995 7.642 Atomic orbital electron populations 1.21809 0.76022 1.03205 1.04155 1.48245 1.07887 1.07121 1.71802 1.22476 0.87454 0.86242 1.05091 1.22913 0.99683 0.88338 1.04503 1.23808 0.89176 0.93504 0.95375 0.86134 1.87025 1.65378 1.28763 1.42431 1.20073 0.76016 0.80005 0.85066 1.90769 1.56583 1.73177 1.20849 1.19677 1.10470 0.99188 0.86069 1.20781 1.02416 0.94245 0.99809 1.18346 1.05510 0.97276 0.93782 1.20655 0.95545 0.94475 0.98311 1.20929 1.02492 1.00509 0.92753 1.21173 0.98382 0.92265 1.00761 1.20335 1.01382 1.00057 0.94098 1.18941 1.01873 0.89288 0.96844 1.40367 1.34604 1.13085 1.06710 1.19061 0.97980 1.02101 1.29201 0.89209 1.25837 1.02434 0.93264 0.93171 1.69673 1.37991 1.26481 1.14302 0.86272 0.80138 0.79516 0.80529 1.15142 1.19052 1.20660 1.21418 0.90339 0.85045 0.75685 1.90701 1.79018 1.23316 1.51550 0.92397 0.88588 0.89672 0.86640 0.86758 0.89541 0.84741 0.82295 0.83375 0.82222 0.83156 0.87641 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.73 11.14 127.77 1.42 3.15 16 2 N -0.62 -15.85 3.33 -842.90 -2.81 -18.66 16 3 C 0.11 1.79 7.35 86.83 0.64 2.42 16 4 C -0.12 -2.74 6.92 31.70 0.22 -2.52 16 5 C 0.04 1.41 3.12 30.64 0.10 1.51 16 6 H 0.12 4.01 7.52 -2.39 -0.02 3.99 16 7 O -0.32 -15.01 7.88 -55.00 -0.43 -15.45 16 8 C 0.54 27.15 7.66 70.04 0.54 27.69 16 9 O -0.52 -26.39 16.05 19.65 0.32 -26.08 16 10 C -0.04 -2.20 6.76 39.87 0.27 -1.93 16 11 C -0.15 -6.65 10.55 22.64 0.24 -6.41 16 12 C -0.14 -6.32 6.16 -21.33 -0.13 -6.45 16 13 C -0.07 -2.41 10.06 22.32 0.22 -2.18 16 14 C -0.15 -4.40 9.97 22.03 0.22 -4.18 16 15 C -0.11 -3.56 10.02 22.32 0.22 -3.33 16 16 C -0.14 -6.00 7.06 22.38 0.16 -5.85 16 17 C 0.04 2.15 5.18 39.07 0.20 2.35 16 18 N -0.28 -15.05 2.36 -331.41 -0.78 -15.83 16 19 C -0.36 -19.93 8.95 84.09 0.75 -19.18 16 20 H 0.09 5.51 7.29 -2.91 -0.02 5.49 16 21 C 0.06 3.40 4.85 84.95 0.41 3.81 16 22 N -0.85 -45.22 13.95 21.67 0.30 -44.92 16 23 Si 0.91 41.78 24.68 68.60 1.69 43.47 16 24 H -0.23 -9.60 5.89 99.48 0.59 -9.01 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 27 C 0.49 18.46 7.68 87.90 0.68 19.13 16 28 O -0.57 -27.29 16.91 1.16 0.02 -27.27 16 29 H 0.06 1.44 7.53 -2.39 -0.02 1.42 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 2.43 8.12 -2.38 -0.02 2.41 16 35 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.16 6.43 8.06 -2.91 -0.02 6.41 16 37 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 38 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 39 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 40 H 0.11 4.77 6.22 -2.91 -0.02 4.75 16 41 H 0.30 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -79.11 346.62 5.41 -73.70 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.94 Total: 23.00 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.16 Total: 8.03 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -3.29 Total: -79.41 kcal Atomic # 8 Polarization: -68.69 SS G_CDS: -0.10 Total: -68.79 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.69 Total: 43.47 kcal Total: -79.11 5.41 -73.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734895888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.816 kcal (2) G-P(sol) polarization free energy of solvation -79.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds