Wall clock time and date at job start Tue Mar 31 2020 16:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46772 * 124.34826 * 2 1 4 4 C 1.54481 * 105.47424 * 197.01859 * 3 2 1 5 5 C 1.54629 * 101.76339 * 334.58532 * 4 3 2 6 6 H 1.09003 * 110.48432 * 143.47454 * 5 4 3 7 7 O 1.45200 * 110.48829 * 265.98342 * 5 4 3 8 8 C 1.34857 * 117.00138 * 205.74193 * 7 5 4 9 9 O 1.21594 * 120.00284 * 4.25746 * 8 7 5 10 10 C 1.46722 * 120.00113 * 184.26128 * 8 7 5 11 11 C 1.36212 * 125.44989 * 185.16824 * 10 8 7 12 12 C 1.41660 * 107.74298 * 179.97438 * 11 10 8 13 13 C 1.40042 * 133.33885 * 180.02562 * 12 11 10 14 14 C 1.36569 * 119.82995 * 179.97438 * 13 12 11 15 15 C 1.38862 * 120.59943 * 0.02562 * 14 13 12 16 16 C 1.37838 * 120.63970 * 0.02562 * 15 14 13 17 17 C 1.39095 * 119.81537 * 359.95646 * 16 15 14 18 18 N 1.37823 * 133.14658 * 180.39159 * 17 16 15 19 19 C 1.36874 * 125.62382 * 359.97438 * 18 17 16 20 20 H 1.07997 * 120.00084 * 218.46833 * 19 18 17 21 21 C 1.39023 * 119.99680 * 38.46610 * 19 18 17 22 22 N 1.31342 * 120.00187 * 17.69191 * 21 19 18 23 23 Si 1.86807 * 119.99709 * 197.68254 * 21 19 18 24 24 H 1.48496 * 109.46953 * 5.01231 * 23 21 19 25 25 H 1.48500 * 109.46617 * 125.01007 * 23 21 19 26 26 H 1.48499 * 109.47268 * 245.00971 * 23 21 19 27 27 C 1.34424 * 124.35225 * 179.70878 * 2 1 3 28 28 O 1.21282 * 124.94211 * 359.55659 * 27 2 1 29 29 H 1.08993 * 109.47152 * 89.99842 * 1 2 3 30 30 H 1.09000 * 109.47239 * 329.99761 * 1 2 3 31 31 H 1.09010 * 109.46661 * 209.99643 * 1 2 3 32 32 H 1.08993 * 110.24491 * 316.02265 * 3 2 1 33 33 H 1.09000 * 110.24026 * 78.02263 * 3 2 1 34 34 H 1.09000 * 110.96647 * 92.70088 * 4 3 2 35 35 H 1.08994 * 110.97015 * 216.46807 * 4 3 2 36 36 H 1.08005 * 126.12991 * 359.97438 * 11 10 8 37 37 H 1.08006 * 120.08433 * 359.92651 * 13 12 11 38 38 H 1.07999 * 119.70022 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.67741 * 179.97438 * 15 14 13 40 40 H 1.08005 * 120.08927 * 179.97438 * 16 15 14 41 41 H 0.97001 * 119.99755 * 184.92674 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7488 -0.4357 5 6 3.6898 -0.7377 -0.0102 6 1 4.2326 -1.3458 -0.7339 7 8 4.2651 -0.8916 1.3141 8 6 4.8113 -2.0888 1.6090 9 8 4.8763 -2.9539 0.7570 10 6 5.3270 -2.3476 2.9580 11 6 5.9870 -3.4732 3.3490 12 6 6.3134 -3.3280 4.7198 13 6 6.9784 -4.1464 5.6413 14 6 7.1459 -3.7229 6.9288 15 6 6.6621 -2.4863 7.3348 16 6 6.0034 -1.6635 6.4464 17 6 5.8209 -2.0728 5.1297 18 7 5.2250 -1.4859 4.0342 19 6 4.6291 -0.2539 4.0154 20 1 3.7250 -0.0999 3.4451 21 6 5.1876 0.7993 4.7306 22 7 6.4365 0.7317 5.1315 23 14 4.1618 2.3109 5.1212 24 1 2.7645 2.0911 4.6693 25 1 4.1759 2.5535 6.5862 26 1 4.7297 3.4896 4.4188 27 6 2.2235 -1.1098 0.0056 28 8 1.7947 -2.2442 0.0191 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 0.8900 0.5139 31 1 -0.3633 -0.8901 0.5138 32 1 1.8983 1.9384 -0.7101 33 1 2.3306 1.6429 1.0004 34 1 3.8268 0.8449 -1.5142 35 1 4.4753 1.3011 0.0966 36 1 6.2198 -4.3239 2.7256 37 1 7.3570 -5.1103 5.3348 38 1 7.6587 -4.3559 7.6379 39 1 6.8025 -2.1664 8.3568 40 1 5.6303 -0.7036 6.7719 41 1 6.8050 1.4333 5.6909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734895889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:21 Heat of formation + Delta-G solvation = -62.785663 kcal Electronic energy + Delta-G solvation = -28331.480482 eV Core-core repulsion = 24369.664504 eV Total energy + Delta-G solvation = -3961.815978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.42554 -41.84132 -40.47561 -37.90613 -37.65613 -37.21665 -35.45654 -33.31158 -32.52626 -30.81132 -30.02961 -28.47101 -27.64059 -26.79045 -25.39797 -22.97445 -22.77943 -22.26348 -21.16888 -20.81401 -19.88135 -19.07093 -18.18225 -17.73979 -17.41306 -17.11167 -16.72850 -16.49433 -16.34664 -16.21427 -15.33113 -15.09875 -14.87299 -14.75484 -14.68610 -14.59660 -14.29983 -13.97725 -13.65714 -13.60836 -13.51726 -13.29367 -13.04934 -12.87833 -12.81491 -12.53013 -12.37056 -12.25835 -12.13863 -11.97314 -11.80551 -11.51742 -10.95294 -10.88804 -10.46771 -9.85916 -9.02084 -8.73852 -8.36216 -6.38992 -0.13406 0.85614 1.06612 1.14230 1.37389 1.41521 1.53744 1.80490 1.94538 2.11615 2.26321 2.72929 2.86387 3.10480 3.29765 3.32484 3.68100 3.88961 4.04493 4.17582 4.28248 4.31209 4.41407 4.46963 4.54483 4.61746 4.69379 4.76029 4.78080 4.83719 4.92493 4.97227 5.12599 5.15823 5.20063 5.29552 5.42076 5.43083 5.70489 5.82880 5.87369 5.93041 6.11961 6.26166 6.54608 6.61504 6.86371 6.94224 7.41490 8.37756 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.005038 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.375170 B = 5556.966908 C = 7066.414097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.609 5.609 3 C 0.099 3.901 4 C -0.116 4.116 5 C 0.037 3.963 6 H 0.108 0.892 7 O -0.317 6.317 8 C 0.542 3.458 9 O -0.530 6.530 10 C -0.054 4.054 11 C -0.167 4.167 12 C -0.152 4.152 13 C -0.088 4.088 14 C -0.149 4.149 15 C -0.132 4.132 16 C -0.083 4.083 17 C 0.066 3.934 18 N -0.255 5.255 19 C -0.365 4.365 20 H 0.107 0.893 21 C 0.021 3.979 22 N -0.847 5.847 23 Si 0.993 3.007 24 H -0.256 1.256 25 H -0.268 1.268 26 H -0.259 1.259 27 C 0.492 3.508 28 O -0.567 6.567 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.102 0.898 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 7.198 -4.481 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.343 5.343 3 C -0.023 4.023 4 C -0.153 4.153 5 C -0.022 4.022 6 H 0.126 0.874 7 O -0.232 6.232 8 C 0.390 3.610 9 O -0.421 6.421 10 C -0.166 4.166 11 C -0.195 4.195 12 C -0.157 4.157 13 C -0.107 4.107 14 C -0.168 4.168 15 C -0.152 4.152 16 C -0.103 4.103 17 C -0.050 4.050 18 N 0.083 4.917 19 C -0.492 4.492 20 H 0.124 0.876 21 C -0.189 4.189 22 N -0.476 5.476 23 Si 0.813 3.187 24 H -0.179 1.179 25 H -0.192 1.192 26 H -0.184 1.184 27 C 0.277 3.723 28 O -0.447 6.447 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.120 0.880 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.857 6.924 -4.791 10.256 hybrid contribution -0.247 0.283 -0.082 0.384 sum -6.104 7.206 -4.873 10.627 Atomic orbital electron populations 1.21807 0.76043 1.03837 1.03403 1.48326 1.07896 1.07165 1.70948 1.22493 0.89134 0.86506 1.04128 1.22915 0.98674 0.88946 1.04746 1.23734 0.91071 1.02820 0.84543 0.87431 1.86978 1.67903 1.34168 1.34171 1.20113 0.73977 0.79926 0.86970 1.90775 1.56587 1.45946 1.48783 1.19447 1.13559 0.97259 0.86356 1.20602 1.05378 0.98290 0.95192 1.18332 1.06845 0.96171 0.94309 1.20493 0.98516 0.98928 0.92765 1.20786 1.03080 0.97003 0.95918 1.21066 0.99767 0.95019 0.99365 1.20197 1.00850 0.98842 0.90443 1.18656 1.03517 0.92952 0.89848 1.40306 1.35612 1.11635 1.04157 1.20120 1.09038 0.84546 1.35540 0.87594 1.26514 0.95684 1.01688 0.94997 1.70095 1.12481 1.36050 1.28999 0.84910 0.78729 0.76229 0.78833 1.17924 1.19242 1.18384 1.21351 0.90117 0.84857 0.75938 1.90696 1.79160 1.23287 1.51506 0.90201 0.87577 0.92975 0.84970 0.90361 0.84446 0.86913 0.83539 0.84539 0.83230 0.84147 0.88032 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.75 10.97 127.77 1.40 3.15 16 2 N -0.61 -15.79 3.33 -842.87 -2.81 -18.60 16 3 C 0.10 1.79 7.35 86.83 0.64 2.43 16 4 C -0.12 -2.39 6.93 31.65 0.22 -2.17 16 5 C 0.04 1.27 3.26 30.59 0.10 1.37 16 6 H 0.11 3.80 7.22 -2.39 -0.02 3.78 16 7 O -0.32 -13.96 7.74 -57.70 -0.45 -14.40 16 8 C 0.54 27.24 7.89 70.04 0.55 27.79 16 9 O -0.53 -27.37 16.14 19.53 0.32 -27.06 16 10 C -0.05 -2.84 6.76 39.88 0.27 -2.57 16 11 C -0.17 -8.28 10.55 22.64 0.24 -8.04 16 12 C -0.15 -7.35 6.16 -21.34 -0.13 -7.48 16 13 C -0.09 -3.46 10.06 22.32 0.22 -3.24 16 14 C -0.15 -5.22 9.97 22.03 0.22 -5.00 16 15 C -0.13 -5.03 10.02 22.32 0.22 -4.80 16 16 C -0.08 -3.91 8.54 22.38 0.19 -3.72 16 17 C 0.07 3.42 6.08 39.07 0.24 3.66 16 18 N -0.25 -13.80 2.83 -331.41 -0.94 -14.74 16 19 C -0.37 -18.93 8.73 84.09 0.73 -18.20 16 20 H 0.11 5.44 6.86 -2.91 -0.02 5.42 16 21 C 0.02 1.02 4.43 84.95 0.38 1.39 16 22 N -0.85 -42.74 10.89 21.67 0.24 -42.50 16 23 Si 0.99 35.96 29.59 68.60 2.03 37.99 16 24 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 25 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 26 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 27 C 0.49 18.02 7.70 87.90 0.68 18.70 16 28 O -0.57 -26.28 17.59 -3.04 -0.05 -26.34 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.28 7.92 -2.38 -0.02 1.26 16 32 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.11 2.34 8.11 -2.39 -0.02 2.32 16 36 H 0.15 6.62 8.06 -2.91 -0.02 6.59 16 37 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.10 4.89 6.44 -2.91 -0.02 4.87 16 41 H 0.29 13.23 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -76.71 352.65 5.57 -71.14 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 1.06 Total: 31.25 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 6.17 Total: 3.26 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -3.51 Total: -75.84 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -0.18 Total: -67.80 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -76.71 5.57 -71.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734895889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.351 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds