Wall clock time and date at job start Tue Mar 31 2020 16:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37703 * 125.72758 * 2 1 4 4 C 1.46430 * 126.00994 * 0.02562 * 3 2 1 5 5 O 1.21768 * 120.00326 * 22.51948 * 4 3 2 6 6 N 1.34781 * 120.00047 * 202.52251 * 4 3 2 7 7 C 1.36821 * 120.00018 * 183.81726 * 6 4 3 8 8 H 1.08004 * 120.00211 * 328.95555 * 7 6 4 9 9 C 1.39028 * 120.00155 * 148.96144 * 7 6 4 10 10 N 1.31384 * 119.99934 * 351.38750 * 9 7 6 11 11 Si 1.86800 * 120.00260 * 171.39018 * 9 7 6 12 12 H 1.48508 * 109.46909 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47265 * 119.99369 * 11 9 7 14 14 H 1.48499 * 109.47136 * 239.99873 * 11 9 7 15 15 C 1.46501 * 119.99816 * 3.81399 * 6 4 3 16 16 C 1.50707 * 109.47181 * 56.75201 * 15 6 4 17 17 O 1.20821 * 119.99562 * 6.86977 * 16 15 6 18 18 O 1.34230 * 119.99829 * 186.86148 * 16 15 6 19 19 C 1.38204 * 107.97764 * 179.73987 * 3 2 1 20 20 C 1.39291 * 107.44503 * 0.25852 * 19 3 2 21 21 C 1.36477 * 125.72465 * 180.19949 * 2 1 3 22 22 C 1.47766 * 125.82458 * 359.97438 * 21 2 1 23 23 C 1.39619 * 120.15208 * 199.35828 * 22 21 2 24 24 C 1.37949 * 119.84749 * 179.75025 * 23 22 21 25 25 C 1.38369 * 120.15054 * 0.52714 * 24 23 22 26 26 C 1.38374 * 120.29690 * 359.74811 * 25 24 23 27 27 C 1.37946 * 120.15238 * 359.97438 * 26 25 24 28 28 H 1.09006 * 109.47110 * 94.57777 * 1 2 3 29 29 H 1.08995 * 109.47564 * 214.57845 * 1 2 3 30 30 H 1.09001 * 109.47054 * 334.58123 * 1 2 3 31 31 H 0.96999 * 120.00313 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.47053 * 176.75350 * 15 6 4 33 33 H 1.08998 * 109.47008 * 296.75344 * 15 6 4 34 34 H 0.96697 * 116.99750 * 180.02562 * 18 16 15 35 35 H 1.07998 * 126.27387 * 180.24750 * 19 3 2 36 36 H 1.08004 * 126.16389 * 179.97438 * 20 19 3 37 37 H 1.07999 * 120.07229 * 0.02562 * 23 22 21 38 38 H 1.08004 * 119.92314 * 180.29842 * 24 23 22 39 39 H 1.07992 * 119.85106 * 179.76663 * 25 24 23 40 40 H 1.07998 * 119.92319 * 180.02562 * 26 25 24 41 41 H 1.07997 * 120.07523 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2690 1.1179 0.0000 4 6 1.8102 2.5084 0.0005 5 8 0.6945 2.7813 0.4049 6 7 2.6227 3.4864 -0.4466 7 6 2.2245 4.7934 -0.3738 8 1 1.1768 5.0439 -0.4517 9 6 3.1686 5.7990 -0.1995 10 7 4.4177 5.4888 0.0642 11 14 2.6610 7.5912 -0.3401 12 1 1.2090 7.6722 -0.6415 13 1 2.9404 8.2869 0.9418 14 1 3.4298 8.2392 -1.4328 15 6 3.9323 3.1499 -1.0106 16 6 3.7533 2.1901 -2.1586 17 8 2.6436 1.9210 -2.5535 18 8 4.8267 1.6344 -2.7423 19 6 3.5853 0.6965 0.0060 20 6 3.5779 -0.6963 0.0036 21 6 2.2618 -1.1080 -0.0039 22 6 1.7941 -2.5097 -0.0082 23 6 2.6528 -3.5367 0.3884 24 6 2.2080 -4.8425 0.3868 25 6 0.9177 -5.1367 -0.0169 26 6 0.0633 -4.1242 -0.4166 27 6 0.4934 -2.8135 -0.4145 28 1 -0.3634 -0.0820 -1.0244 29 1 -0.3634 -0.8461 0.5832 30 1 -0.3633 0.9282 0.4411 31 1 5.0763 6.1904 0.1862 32 1 4.4179 4.0579 -1.3684 33 1 4.5504 2.6859 -0.2421 34 1 4.6618 1.0253 -3.4750 35 1 4.4592 1.3310 0.0113 36 1 4.4464 -1.3383 0.0066 37 1 3.6615 -3.3088 0.6999 38 1 2.8697 -5.6374 0.6979 39 1 0.5757 -6.1610 -0.0198 40 1 -0.9427 -4.3607 -0.7302 41 1 -0.1746 -2.0243 -0.7263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739002481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:53 Heat of formation + Delta-G solvation = -16.791510 kcal Electronic energy + Delta-G solvation = -28330.374806 eV Core-core repulsion = 24370.553284 eV Total energy + Delta-G solvation = -3959.821522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16165 -39.65932 -38.71758 -37.82711 -35.50829 -34.83246 -32.90212 -32.02832 -31.61439 -30.77968 -28.38100 -27.53779 -26.19954 -24.99765 -22.90402 -22.72597 -21.49539 -20.64375 -19.84178 -18.71075 -17.61189 -17.18751 -16.99920 -16.42899 -15.97344 -15.43185 -15.25606 -15.03177 -14.77282 -14.61096 -14.27349 -13.88981 -13.60714 -13.39844 -13.27668 -13.05048 -12.90491 -12.72151 -12.28333 -12.18218 -11.90929 -11.77990 -11.52362 -11.32010 -11.14660 -10.96721 -10.88926 -10.72848 -10.60604 -10.38955 -9.83663 -9.25962 -9.13304 -9.02356 -8.70701 -8.32042 -7.86740 -7.22851 -6.53785 -4.14381 0.98086 1.33529 2.28274 2.90728 3.07835 3.10502 3.19829 3.24027 3.27777 3.59192 3.90899 4.05278 4.29960 4.65866 4.76695 4.82240 4.87973 5.03889 5.04980 5.14694 5.37405 5.41265 5.51752 5.56229 5.68224 5.74909 5.83933 5.94363 5.97838 6.03961 6.22231 6.34358 6.37902 6.43728 6.58460 6.60277 6.75974 6.90994 7.11767 7.24726 7.40542 7.46149 7.61479 7.99013 8.27789 8.57651 8.95940 9.13633 9.73274 10.52557 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.003555 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.774468 B = 7874.713775 C = 8450.840895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.398 5.398 3 C 0.027 3.973 4 C 0.534 3.466 5 O -0.580 6.580 6 N -0.414 5.414 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.031 3.969 10 N -0.882 5.882 11 Si 0.934 3.066 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.120 3.880 16 C 0.461 3.539 17 O -0.516 6.516 18 O -0.520 6.520 19 C -0.199 4.199 20 C -0.169 4.169 21 C 0.032 3.968 22 C 0.002 3.998 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.114 4.114 27 C -0.137 4.137 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.275 0.725 32 H 0.151 0.849 33 H 0.104 0.896 34 H 0.396 0.604 35 H 0.158 0.842 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -15.372 -1.881 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.070 5.070 3 C -0.091 4.091 4 C 0.324 3.676 5 O -0.465 6.465 6 N -0.132 5.132 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.172 4.172 10 N -0.521 5.521 11 Si 0.760 3.240 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.006 4.006 16 C 0.302 3.698 17 O -0.404 6.404 18 O -0.331 6.331 19 C -0.223 4.223 20 C -0.194 4.194 21 C -0.082 4.082 22 C 0.002 3.998 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.151 4.151 26 C -0.132 4.132 27 C -0.155 4.155 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.168 0.832 33 H 0.122 0.878 34 H 0.253 0.747 35 H 0.175 0.825 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.582 -14.860 -1.432 14.940 hybrid contribution -0.154 0.303 -0.664 0.746 sum -0.736 -14.557 -2.096 14.726 Atomic orbital electron populations 1.22490 0.77084 1.05989 1.02937 1.43778 1.06222 1.04489 1.52498 1.20693 0.89925 0.88237 1.10203 1.16874 0.86581 0.82790 0.81382 1.90596 1.20376 1.83356 1.52189 1.42775 1.14453 1.05758 1.50192 1.19700 0.95285 0.79569 1.48064 0.87950 1.25498 0.95307 1.01068 0.95363 1.69739 1.02284 1.34331 1.45783 0.85721 0.79219 0.80982 0.78040 1.19038 1.20377 1.20412 1.21584 0.88895 0.98849 0.91223 1.24810 0.82036 0.79081 0.83843 1.90661 1.26660 1.59627 1.63422 1.84565 1.39787 1.59068 1.49639 1.21907 0.95452 0.95305 1.09678 1.20908 0.94096 0.94844 1.09546 1.18984 0.90231 0.85436 1.13531 1.18124 0.93679 0.89891 0.98145 1.21133 0.99693 0.91882 0.99889 1.21045 0.96082 0.96206 0.99912 1.21161 0.94271 0.99053 1.00577 1.21034 0.99673 0.92598 0.99854 1.21618 0.95762 0.97212 1.00886 0.91052 0.90111 0.86822 0.91497 0.83171 0.87839 0.74703 0.82528 0.84414 0.85446 0.85907 0.86279 0.86092 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 9.07 59.84 0.54 1.49 16 2 N -0.40 -7.77 3.19 -115.75 -0.37 -8.14 16 3 C 0.03 0.59 5.05 -81.94 -0.41 0.18 16 4 C 0.53 13.78 6.56 -12.96 -0.08 13.70 16 5 O -0.58 -16.19 14.55 5.13 0.07 -16.11 16 6 N -0.41 -10.62 2.58 -117.67 -0.30 -10.92 16 7 C -0.30 -8.07 9.14 -15.03 -0.14 -8.21 16 8 H 0.10 2.90 7.53 -52.48 -0.39 2.50 16 9 C 0.03 0.77 5.09 -17.45 -0.09 0.68 16 10 N -0.88 -21.85 10.78 55.50 0.60 -21.25 16 11 Si 0.93 19.81 29.56 -169.99 -5.03 14.79 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 15 C 0.12 2.65 4.61 -5.19 -0.02 2.63 16 16 C 0.46 9.36 5.41 36.01 0.19 9.56 16 17 O -0.52 -12.04 15.16 -18.75 -0.28 -12.32 16 18 O -0.52 -8.28 13.42 -39.26 -0.53 -8.81 16 19 C -0.20 -3.88 7.71 -39.20 -0.30 -4.18 16 20 C -0.17 -2.88 10.21 -39.32 -0.40 -3.28 16 21 C 0.03 0.55 6.72 -82.03 -0.55 0.00 16 22 C 0.00 0.04 5.84 -104.97 -0.61 -0.58 16 23 C -0.11 -1.31 9.56 -39.17 -0.37 -1.69 16 24 C -0.11 -1.18 10.03 -39.64 -0.40 -1.58 16 25 C -0.13 -1.32 10.04 -39.48 -0.40 -1.72 16 26 C -0.11 -1.24 10.03 -39.64 -0.40 -1.63 16 27 C -0.14 -1.79 8.54 -39.17 -0.33 -2.13 16 28 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 29 H 0.08 1.12 6.30 -51.93 -0.33 0.79 16 30 H 0.11 2.19 5.93 -51.93 -0.31 1.88 16 31 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 32 H 0.15 3.47 5.71 -51.93 -0.30 3.18 16 33 H 0.10 2.15 5.20 -51.93 -0.27 1.88 16 34 H 0.40 4.63 9.10 45.56 0.41 5.04 16 35 H 0.16 2.92 4.62 -52.49 -0.24 2.68 16 36 H 0.14 1.90 7.60 -52.48 -0.40 1.51 16 37 H 0.13 1.38 7.31 -52.49 -0.38 1.00 16 38 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.63 4.81 -52.49 -0.25 1.37 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -32.59 338.46 -7.78 -40.37 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -3.26 Total: 14.06 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -3.78 Total: 3.24 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.07 Total: -40.32 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.74 Total: -37.24 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.59 -7.78 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739002481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.580 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds