Wall clock time and date at job start Tue Mar 31 2020 16:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37703 * 125.72758 * 2 1 4 4 C 1.46430 * 126.00994 * 0.02562 * 3 2 1 5 5 O 1.21768 * 120.00326 * 22.51948 * 4 3 2 6 6 N 1.34781 * 120.00047 * 202.52251 * 4 3 2 7 7 C 1.36821 * 120.00018 * 183.81726 * 6 4 3 8 8 H 1.08004 * 120.00211 * 328.95555 * 7 6 4 9 9 C 1.39028 * 120.00155 * 148.96144 * 7 6 4 10 10 N 1.31384 * 119.99934 * 351.38750 * 9 7 6 11 11 Si 1.86800 * 120.00260 * 171.39018 * 9 7 6 12 12 H 1.48508 * 109.46909 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47265 * 119.99369 * 11 9 7 14 14 H 1.48499 * 109.47136 * 239.99873 * 11 9 7 15 15 C 1.46501 * 119.99816 * 3.81399 * 6 4 3 16 16 C 1.50707 * 109.47181 * 56.75201 * 15 6 4 17 17 O 1.20821 * 119.99562 * 6.86977 * 16 15 6 18 18 O 1.34230 * 119.99829 * 186.86148 * 16 15 6 19 19 C 1.38204 * 107.97764 * 179.73987 * 3 2 1 20 20 C 1.39291 * 107.44503 * 0.25852 * 19 3 2 21 21 C 1.36477 * 125.72465 * 180.19949 * 2 1 3 22 22 C 1.47766 * 125.82458 * 359.97438 * 21 2 1 23 23 C 1.39619 * 120.15208 * 199.35828 * 22 21 2 24 24 C 1.37949 * 119.84749 * 179.75025 * 23 22 21 25 25 C 1.38369 * 120.15054 * 0.52714 * 24 23 22 26 26 C 1.38374 * 120.29690 * 359.74811 * 25 24 23 27 27 C 1.37946 * 120.15238 * 359.97438 * 26 25 24 28 28 H 1.09006 * 109.47110 * 94.57777 * 1 2 3 29 29 H 1.08995 * 109.47564 * 214.57845 * 1 2 3 30 30 H 1.09001 * 109.47054 * 334.58123 * 1 2 3 31 31 H 0.96999 * 120.00313 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.47053 * 176.75350 * 15 6 4 33 33 H 1.08998 * 109.47008 * 296.75344 * 15 6 4 34 34 H 0.96697 * 116.99750 * 180.02562 * 18 16 15 35 35 H 1.07998 * 126.27387 * 180.24750 * 19 3 2 36 36 H 1.08004 * 126.16389 * 179.97438 * 20 19 3 37 37 H 1.07999 * 120.07229 * 0.02562 * 23 22 21 38 38 H 1.08004 * 119.92314 * 180.29842 * 24 23 22 39 39 H 1.07992 * 119.85106 * 179.76663 * 25 24 23 40 40 H 1.07998 * 119.92319 * 180.02562 * 26 25 24 41 41 H 1.07997 * 120.07523 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2690 1.1179 0.0000 4 6 1.8102 2.5084 0.0005 5 8 0.6945 2.7813 0.4049 6 7 2.6227 3.4864 -0.4466 7 6 2.2245 4.7934 -0.3738 8 1 1.1768 5.0439 -0.4517 9 6 3.1686 5.7990 -0.1995 10 7 4.4177 5.4888 0.0642 11 14 2.6610 7.5912 -0.3401 12 1 1.2090 7.6722 -0.6415 13 1 2.9404 8.2869 0.9418 14 1 3.4298 8.2392 -1.4328 15 6 3.9323 3.1499 -1.0106 16 6 3.7533 2.1901 -2.1586 17 8 2.6436 1.9210 -2.5535 18 8 4.8267 1.6344 -2.7423 19 6 3.5853 0.6965 0.0060 20 6 3.5779 -0.6963 0.0036 21 6 2.2618 -1.1080 -0.0039 22 6 1.7941 -2.5097 -0.0082 23 6 2.6528 -3.5367 0.3884 24 6 2.2080 -4.8425 0.3868 25 6 0.9177 -5.1367 -0.0169 26 6 0.0633 -4.1242 -0.4166 27 6 0.4934 -2.8135 -0.4145 28 1 -0.3634 -0.0820 -1.0244 29 1 -0.3634 -0.8461 0.5832 30 1 -0.3633 0.9282 0.4411 31 1 5.0763 6.1904 0.1862 32 1 4.4179 4.0579 -1.3684 33 1 4.5504 2.6859 -0.2421 34 1 4.6618 1.0253 -3.4750 35 1 4.4592 1.3310 0.0113 36 1 4.4464 -1.3383 0.0066 37 1 3.6615 -3.3088 0.6999 38 1 2.8697 -5.6374 0.6979 39 1 0.5757 -6.1610 -0.0198 40 1 -0.9427 -4.3607 -0.7302 41 1 -0.1746 -2.0243 -0.7263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739002481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:51 Heat of formation + Delta-G solvation = -37.214457 kcal Electronic energy + Delta-G solvation = -28331.260411 eV Core-core repulsion = 24370.553284 eV Total energy + Delta-G solvation = -3960.707127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.63925 -41.19044 -39.94696 -39.37293 -37.15564 -36.64298 -34.42108 -33.60195 -32.87850 -31.70044 -30.03310 -29.08345 -27.61661 -26.76429 -24.19881 -23.67348 -23.03200 -22.09756 -21.22634 -20.20714 -19.30054 -18.88038 -18.45000 -17.78537 -17.30183 -17.01181 -16.68386 -16.58479 -16.28112 -16.04412 -15.64878 -15.34219 -15.07851 -14.81921 -14.50214 -14.46583 -14.10257 -13.93052 -13.76748 -13.64289 -13.40783 -13.23372 -13.05461 -12.92825 -12.74073 -12.55784 -12.31691 -12.11418 -12.02600 -11.82004 -11.54702 -11.01791 -10.63455 -10.30711 -9.87892 -9.80577 -9.73493 -8.58648 -8.45276 -6.16165 -0.07209 0.48293 0.79109 1.36558 1.41688 1.42394 1.54724 1.69534 1.87747 2.04907 2.29744 2.49378 2.94832 2.96736 3.14059 3.57452 3.79293 3.85783 3.96465 4.07603 4.16119 4.17721 4.27487 4.43569 4.45802 4.57628 4.58193 4.63613 4.67398 4.84136 4.97479 5.11397 5.14310 5.19589 5.37582 5.49180 5.52109 5.60141 5.69227 5.85362 5.97851 6.04751 6.08456 6.27412 6.36960 6.97940 7.08557 7.24355 7.81588 8.59804 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.003555 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.774468 B = 7874.713775 C = 8450.840895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.407 5.407 3 C -0.026 4.026 4 C 0.520 3.480 5 O -0.624 6.624 6 N -0.426 5.426 7 C -0.342 4.342 8 H 0.072 0.928 9 C 0.006 3.994 10 N -0.889 5.889 11 Si 0.996 3.004 12 H -0.277 1.277 13 H -0.270 1.270 14 H -0.260 1.260 15 C 0.124 3.876 16 C 0.475 3.525 17 O -0.548 6.548 18 O -0.500 6.500 19 C -0.188 4.188 20 C -0.178 4.178 21 C 0.052 3.948 22 C -0.034 4.034 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.148 4.148 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.284 0.716 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.420 0.580 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -18.501 -2.191 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.080 5.080 3 C -0.141 4.141 4 C 0.312 3.688 5 O -0.513 6.513 6 N -0.143 5.143 7 C -0.470 4.470 8 H 0.090 0.910 9 C -0.197 4.197 10 N -0.527 5.527 11 Si 0.819 3.181 12 H -0.202 1.202 13 H -0.195 1.195 14 H -0.185 1.185 15 C -0.001 4.001 16 C 0.318 3.682 17 O -0.439 6.439 18 O -0.312 6.312 19 C -0.213 4.213 20 C -0.201 4.201 21 C -0.063 4.063 22 C -0.035 4.035 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.136 4.136 27 C -0.167 4.167 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.281 0.719 35 H 0.177 0.823 36 H 0.191 0.809 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.995 -18.000 -1.768 18.114 hybrid contribution -0.597 0.995 -0.575 1.295 sum 0.398 -17.006 -2.343 17.171 Atomic orbital electron populations 1.22497 0.76499 1.05563 1.03594 1.43963 1.06891 1.04532 1.52568 1.20260 0.91406 0.87165 1.15306 1.17480 0.86135 0.84563 0.80660 1.90532 1.22114 1.84485 1.54129 1.42915 1.15471 1.05448 1.50505 1.19607 0.94683 0.81245 1.51450 0.90989 1.26196 0.95145 1.04265 0.94082 1.69781 1.02621 1.35819 1.44472 0.84842 0.78374 0.76231 0.78695 1.20163 1.19492 1.18473 1.21513 0.87369 0.99014 0.92204 1.24227 0.82098 0.78626 0.83250 1.90659 1.28132 1.60764 1.64308 1.84476 1.37394 1.59105 1.50246 1.22001 0.94339 0.96676 1.08263 1.21261 0.95236 0.93897 1.09753 1.19647 0.90257 0.86254 1.10134 1.18213 0.95095 0.88683 1.01491 1.21374 0.99935 0.92168 0.99094 1.21448 0.96752 0.96090 0.98873 1.21634 0.93829 1.00370 0.98071 1.21347 1.01067 0.91765 0.99463 1.21715 0.95344 0.98398 1.01226 0.90422 0.87113 0.89911 0.90552 0.84272 0.86796 0.71925 0.82287 0.80892 0.84205 0.82751 0.83058 0.83824 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.11 9.07 127.77 1.16 3.27 16 2 N -0.41 -16.38 3.19 -520.13 -1.66 -18.04 16 3 C -0.03 -1.19 5.05 40.35 0.20 -0.99 16 4 C 0.52 28.74 6.56 86.38 0.57 29.30 16 5 O -0.62 -37.93 14.55 -4.57 -0.07 -37.99 16 6 N -0.43 -23.18 2.58 -644.37 -1.66 -24.84 16 7 C -0.34 -19.68 9.14 84.10 0.77 -18.92 16 8 H 0.07 4.45 7.53 -2.91 -0.02 4.43 16 9 C 0.01 0.29 5.09 84.95 0.43 0.73 16 10 N -0.89 -44.48 10.78 21.68 0.23 -44.25 16 11 Si 1.00 41.32 29.56 68.60 2.03 43.35 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 14 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 15 C 0.12 5.64 4.61 85.64 0.40 6.03 16 16 C 0.48 19.52 5.41 71.24 0.39 19.90 16 17 O -0.55 -26.31 15.16 21.98 0.33 -25.98 16 18 O -0.50 -15.14 13.42 -51.42 -0.69 -15.83 16 19 C -0.19 -7.35 7.71 22.52 0.17 -7.18 16 20 C -0.18 -5.80 10.21 22.44 0.23 -5.57 16 21 C 0.05 1.76 6.72 40.86 0.27 2.04 16 22 C -0.03 -0.92 5.84 -20.09 -0.12 -1.04 16 23 C -0.11 -2.25 9.56 22.53 0.22 -2.04 16 24 C -0.11 -1.82 10.03 22.23 0.22 -1.59 16 25 C -0.12 -1.84 10.04 22.33 0.22 -1.62 16 26 C -0.12 -2.18 10.03 22.23 0.22 -1.96 16 27 C -0.15 -3.63 8.54 22.54 0.19 -3.44 16 28 H 0.08 2.59 7.67 -2.38 -0.02 2.57 16 29 H 0.11 3.14 6.30 -2.39 -0.02 3.13 16 30 H 0.08 3.49 5.93 -2.39 -0.01 3.47 16 31 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 32 H 0.14 6.61 5.71 -2.38 -0.01 6.59 16 33 H 0.11 4.85 5.20 -2.39 -0.01 4.84 16 34 H 0.42 8.83 9.10 -74.06 -0.67 8.15 16 35 H 0.16 5.94 4.62 -2.91 -0.01 5.93 16 36 H 0.17 4.24 7.60 -2.91 -0.02 4.21 16 37 H 0.14 2.51 7.31 -2.91 -0.02 2.49 16 38 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.12 3.01 4.81 -2.91 -0.01 3.00 16 Total: -1.00 -75.96 338.46 4.51 -71.45 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.44 Total: 35.21 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 5.55 Total: 16.93 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -3.09 Total: -87.13 kcal Atomic # 8 Polarization: -79.38 SS G_CDS: -0.42 Total: -79.80 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -75.96 4.51 -71.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739002481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.237 kcal (2) G-P(sol) polarization free energy of solvation -75.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds