Wall clock time and date at job start Tue Mar 31 2020 16:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46907 * 2 1 4 4 C 1.35665 * 116.99951 * 180.02562 * 3 2 1 5 5 C 1.38822 * 119.64133 * 180.02562 * 4 3 2 6 6 C 1.38560 * 119.26231 * 179.97438 * 5 4 3 7 7 C 1.38547 * 118.55738 * 359.74969 * 6 5 4 8 8 C 1.38896 * 119.22644 * 0.49094 * 7 6 5 9 9 N 1.39310 * 119.66355 * 179.77126 * 8 7 6 10 10 C 1.34774 * 120.00103 * 185.13234 * 9 8 7 11 11 O 1.21588 * 120.00289 * 354.84382 * 10 9 8 12 12 C 1.47494 * 119.99734 * 174.84035 * 10 9 8 13 13 C 1.39685 * 120.20267 * 0.02562 * 12 10 9 14 14 C 1.37815 * 119.91726 * 180.27740 * 13 12 10 15 15 C 1.38583 * 120.33038 * 359.46502 * 14 13 12 16 16 C 1.38026 * 120.40145 * 0.55815 * 15 14 13 17 17 C 1.38836 * 120.07416 * 359.69990 * 16 15 14 18 18 O 1.35512 * 120.16482 * 180.02562 * 17 16 15 19 19 C 1.34813 * 116.99917 * 5.57026 * 18 17 16 20 20 H 1.08008 * 120.00063 * 354.94201 * 19 18 17 21 21 C 1.38703 * 120.00286 * 174.93991 * 19 18 17 22 22 N 1.31523 * 119.99697 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47242 * 60.00172 * 23 21 19 25 25 H 1.48503 * 109.46981 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47370 * 299.99842 * 23 21 19 27 27 N 1.32292 * 119.64459 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.46759 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47329 * 299.99495 * 1 2 3 30 30 H 1.09003 * 109.47430 * 60.00107 * 1 2 3 31 31 H 1.09002 * 109.47181 * 240.00825 * 2 1 3 32 32 H 1.08996 * 109.47309 * 120.00585 * 2 1 3 33 33 H 1.07994 * 120.37042 * 359.95459 * 5 4 3 34 34 H 1.08003 * 120.71607 * 180.02562 * 6 5 4 35 35 H 1.08003 * 120.38802 * 180.26505 * 7 6 5 36 36 H 0.97003 * 119.99610 * 5.14094 * 9 8 7 37 37 H 1.08001 * 120.03820 * 359.97438 * 13 12 10 38 38 H 1.08005 * 119.83440 * 179.72583 * 14 13 12 39 39 H 1.07994 * 119.79977 * 180.30544 * 15 14 13 40 40 H 1.07992 * 119.96800 * 179.72399 * 16 15 14 41 41 H 0.97001 * 119.99570 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3512 1.5251 -0.0005 5 6 3.8738 2.8113 0.0000 6 6 5.2486 2.9838 0.0000 7 6 6.0572 1.8588 0.0047 8 6 5.4689 0.6006 -0.0010 9 7 6.2733 -0.5367 -0.0011 10 6 5.7138 -1.7579 -0.1110 11 8 4.5035 -1.8740 -0.1157 12 6 6.5698 -2.9536 -0.2257 13 6 7.9607 -2.8252 -0.2203 14 6 8.7549 -3.9458 -0.3336 15 6 8.1807 -5.2024 -0.4419 16 6 6.8078 -5.3448 -0.4491 17 6 5.9918 -4.2267 -0.3413 18 8 4.6437 -4.3644 -0.3477 19 6 4.1569 -5.6216 -0.3451 20 1 4.8311 -6.4620 -0.4207 21 6 2.7902 -5.8359 -0.2453 22 7 1.9691 -4.8126 -0.1527 23 14 2.1158 -7.5779 -0.2411 24 1 2.6810 -8.3247 0.9112 25 1 0.6358 -7.5354 -0.1261 26 1 2.4942 -8.2583 -1.5056 27 7 4.1506 0.4711 -0.0015 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.2161 3.6678 0.0001 34 1 5.6804 3.9737 0.0008 35 1 7.1326 1.9589 0.0092 36 1 7.2362 -0.4497 0.0781 37 1 8.4131 -1.8485 -0.1324 38 1 9.8302 -3.8446 -0.3337 39 1 8.8112 -6.0752 -0.5253 40 1 6.3678 -6.3270 -0.5384 41 1 1.0133 -4.9625 -0.0833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746541236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:31 Heat of formation + Delta-G solvation = -14.963333 kcal Electronic energy + Delta-G solvation = -27577.555270 eV Core-core repulsion = 23617.813024 eV Total energy + Delta-G solvation = -3959.742246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.64218 -39.53675 -38.41294 -37.30606 -36.39508 -34.22162 -32.39317 -32.09406 -31.48480 -30.54402 -29.00891 -28.74686 -25.48042 -24.36620 -23.39470 -22.61517 -21.98672 -21.35392 -19.92192 -18.67282 -18.05138 -17.40845 -16.68684 -16.12784 -15.90748 -15.86423 -15.28004 -14.73111 -14.67843 -14.39918 -14.21189 -13.85660 -13.74801 -13.52643 -13.20953 -13.15808 -12.80674 -12.56648 -12.21553 -12.13601 -12.00413 -11.76223 -11.39069 -11.19196 -11.07268 -10.93988 -10.87110 -10.54204 -10.52097 -10.06493 -9.79800 -9.45467 -9.18229 -8.92125 -8.54625 -8.35405 -7.76560 -7.37247 -6.49641 -4.09211 1.32579 1.53296 1.73421 2.25705 3.08733 3.10585 3.12912 3.16747 3.44351 3.61651 3.89200 4.14835 4.59051 4.63043 4.99790 5.07365 5.11072 5.17082 5.33618 5.39516 5.42424 5.47586 5.51967 5.56161 5.65957 5.84662 5.93766 6.04312 6.05737 6.22700 6.30040 6.32354 6.37695 6.47150 6.49878 6.60810 6.83167 6.95994 6.99541 7.15386 7.22432 7.49404 7.62323 7.72043 7.88636 8.35902 8.89570 8.97907 9.60391 10.63529 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.004896 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.555163 B = 5718.152542 C = 8577.784335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 O -0.312 6.312 4 C 0.358 3.642 5 C -0.240 4.240 6 C -0.016 4.016 7 C -0.263 4.263 8 C 0.417 3.583 9 N -0.667 5.667 10 C 0.540 3.460 11 O -0.430 6.430 12 C -0.229 4.229 13 C -0.039 4.039 14 C -0.229 4.229 15 C -0.050 4.050 16 C -0.235 4.235 17 C 0.190 3.810 18 O -0.122 6.122 19 C -0.404 4.404 20 H 0.094 0.906 21 C 0.046 3.954 22 N -0.829 5.829 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.269 1.269 27 N -0.527 5.527 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.411 0.589 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 10.297 0.407 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.005 4.005 3 O -0.219 6.219 4 C 0.177 3.823 5 C -0.263 4.263 6 C -0.041 4.041 7 C -0.287 4.287 8 C 0.185 3.815 9 N -0.315 5.315 10 C 0.328 3.672 11 O -0.297 6.297 12 C -0.234 4.234 13 C -0.058 4.058 14 C -0.248 4.248 15 C -0.068 4.068 16 C -0.255 4.255 17 C 0.130 3.870 18 O -0.020 6.020 19 C -0.479 4.479 20 H 0.111 0.889 21 C -0.162 4.162 22 N -0.460 5.460 23 Si 0.764 3.236 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.194 1.194 27 N -0.257 5.257 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.248 0.752 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.317 9.611 0.401 10.991 hybrid contribution 0.815 -0.381 0.023 0.900 sum 6.132 9.231 0.424 11.090 Atomic orbital electron populations 1.21794 0.93544 1.03048 1.02102 1.22631 0.93929 0.79650 1.04299 1.86162 1.16635 1.31944 1.87186 1.19640 0.84234 0.89024 0.89403 1.20852 0.95734 0.95486 1.14186 1.21017 0.92066 0.98440 0.92617 1.21217 1.00952 0.91237 1.15248 1.18069 0.87024 0.86057 0.90366 1.43865 1.09918 1.04596 1.73112 1.18475 0.88742 0.81919 0.78039 1.91021 1.12936 1.84126 1.41594 1.18739 0.92648 0.90902 1.21091 1.20754 0.91520 0.97798 0.95730 1.20460 0.98574 0.92621 1.13153 1.20916 0.94206 0.96762 0.94939 1.21159 0.93584 0.99145 1.11567 1.19226 0.85195 0.91805 0.90805 1.84152 1.14024 1.30081 1.73748 1.21449 0.91894 0.81480 1.53113 0.88903 1.25371 0.94978 0.99800 0.96038 1.70116 1.03756 1.30295 1.41807 0.85803 0.78256 0.80246 0.79273 1.19355 1.20122 1.19363 1.67319 1.04014 1.32426 1.21899 0.89990 0.92349 0.92313 0.90706 0.90926 0.84669 0.84325 0.84870 0.75216 0.87086 0.87145 0.87083 0.84995 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 37.16 0.38 -1.85 16 2 C 0.07 1.32 6.03 37.16 0.22 1.55 16 3 O -0.31 -5.65 10.11 -18.70 -0.19 -5.84 16 4 C 0.36 6.43 7.48 -17.14 -0.13 6.30 16 5 C -0.24 -3.34 10.04 -39.25 -0.39 -3.73 16 6 C -0.02 -0.18 10.16 -39.35 -0.40 -0.58 16 7 C -0.26 -3.35 9.93 -39.22 -0.39 -3.74 16 8 C 0.42 7.20 7.42 -154.76 -1.15 6.06 16 9 N -0.67 -11.27 5.33 -12.41 -0.07 -11.34 16 10 C 0.54 11.88 7.72 -12.49 -0.10 11.78 16 11 O -0.43 -11.60 13.42 -16.57 -0.22 -11.82 16 12 C -0.23 -4.85 5.89 -104.81 -0.62 -5.47 16 13 C -0.04 -0.64 9.53 -39.20 -0.37 -1.02 16 14 C -0.23 -3.60 10.02 -39.61 -0.40 -4.00 16 15 C -0.05 -0.85 10.03 -39.53 -0.40 -1.24 16 16 C -0.24 -4.92 9.16 -39.44 -0.36 -5.28 16 17 C 0.19 4.60 6.66 -38.59 -0.26 4.34 16 18 O -0.12 -3.52 7.84 -21.03 -0.16 -3.68 16 19 C -0.40 -11.16 9.49 30.90 0.29 -10.87 16 20 H 0.09 2.33 5.21 -52.48 -0.27 2.05 16 21 C 0.05 1.26 5.49 -17.51 -0.10 1.17 16 22 N -0.83 -24.18 13.67 55.48 0.76 -23.42 16 23 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 N -0.53 -10.68 6.73 -12.46 -0.08 -10.77 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.62 8.10 -51.93 -0.42 1.20 16 32 H 0.07 1.55 8.10 -51.93 -0.42 1.12 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.41 5.10 6.74 -40.82 -0.28 4.82 16 37 H 0.11 1.35 6.42 -52.49 -0.34 1.01 16 38 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -34.62 356.55 -8.31 -42.93 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.54 Total: 10.05 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -4.15 Total: -6.58 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.61 Total: -45.53 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.58 Total: -21.35 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.62 -8.31 -42.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746541236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.968 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds