Wall clock time and date at job start Tue Mar 31 2020 16:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.46907 * 2 1 4 4 C 1.35665 * 116.99951 * 180.02562 * 3 2 1 5 5 C 1.38822 * 119.64133 * 180.02562 * 4 3 2 6 6 C 1.38560 * 119.26231 * 179.97438 * 5 4 3 7 7 C 1.38547 * 118.55738 * 359.74969 * 6 5 4 8 8 C 1.38896 * 119.22644 * 0.49094 * 7 6 5 9 9 N 1.39310 * 119.66355 * 179.77126 * 8 7 6 10 10 C 1.34774 * 120.00103 * 185.13234 * 9 8 7 11 11 O 1.21588 * 120.00289 * 354.84382 * 10 9 8 12 12 C 1.47494 * 119.99734 * 174.84035 * 10 9 8 13 13 C 1.39685 * 120.20267 * 0.02562 * 12 10 9 14 14 C 1.37815 * 119.91726 * 180.27740 * 13 12 10 15 15 C 1.38583 * 120.33038 * 359.46502 * 14 13 12 16 16 C 1.38026 * 120.40145 * 0.55815 * 15 14 13 17 17 C 1.38836 * 120.07416 * 359.69990 * 16 15 14 18 18 O 1.35512 * 120.16482 * 180.02562 * 17 16 15 19 19 C 1.34813 * 116.99917 * 5.57026 * 18 17 16 20 20 H 1.08008 * 120.00063 * 354.94201 * 19 18 17 21 21 C 1.38703 * 120.00286 * 174.93991 * 19 18 17 22 22 N 1.31523 * 119.99697 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47242 * 60.00172 * 23 21 19 25 25 H 1.48503 * 109.46981 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47370 * 299.99842 * 23 21 19 27 27 N 1.32292 * 119.64459 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.46759 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47329 * 299.99495 * 1 2 3 30 30 H 1.09003 * 109.47430 * 60.00107 * 1 2 3 31 31 H 1.09002 * 109.47181 * 240.00825 * 2 1 3 32 32 H 1.08996 * 109.47309 * 120.00585 * 2 1 3 33 33 H 1.07994 * 120.37042 * 359.95459 * 5 4 3 34 34 H 1.08003 * 120.71607 * 180.02562 * 6 5 4 35 35 H 1.08003 * 120.38802 * 180.26505 * 7 6 5 36 36 H 0.97003 * 119.99610 * 5.14094 * 9 8 7 37 37 H 1.08001 * 120.03820 * 359.97438 * 13 12 10 38 38 H 1.08005 * 119.83440 * 179.72583 * 14 13 12 39 39 H 1.07994 * 119.79977 * 180.30544 * 15 14 13 40 40 H 1.07992 * 119.96800 * 179.72399 * 16 15 14 41 41 H 0.97001 * 119.99570 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3512 1.5251 -0.0005 5 6 3.8738 2.8113 0.0000 6 6 5.2486 2.9838 0.0000 7 6 6.0572 1.8588 0.0047 8 6 5.4689 0.6006 -0.0010 9 7 6.2733 -0.5367 -0.0011 10 6 5.7138 -1.7579 -0.1110 11 8 4.5035 -1.8740 -0.1157 12 6 6.5698 -2.9536 -0.2257 13 6 7.9607 -2.8252 -0.2203 14 6 8.7549 -3.9458 -0.3336 15 6 8.1807 -5.2024 -0.4419 16 6 6.8078 -5.3448 -0.4491 17 6 5.9918 -4.2267 -0.3413 18 8 4.6437 -4.3644 -0.3477 19 6 4.1569 -5.6216 -0.3451 20 1 4.8311 -6.4620 -0.4207 21 6 2.7902 -5.8359 -0.2453 22 7 1.9691 -4.8126 -0.1527 23 14 2.1158 -7.5779 -0.2411 24 1 2.6810 -8.3247 0.9112 25 1 0.6358 -7.5354 -0.1261 26 1 2.4942 -8.2583 -1.5056 27 7 4.1506 0.4711 -0.0015 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.2161 3.6678 0.0001 34 1 5.6804 3.9737 0.0008 35 1 7.1326 1.9589 0.0092 36 1 7.2362 -0.4497 0.0781 37 1 8.4131 -1.8485 -0.1324 38 1 9.8302 -3.8446 -0.3337 39 1 8.8112 -6.0752 -0.5253 40 1 6.3678 -6.3270 -0.5384 41 1 1.0133 -4.9625 -0.0833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746541236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:28 Heat of formation + Delta-G solvation = -39.500272 kcal Electronic energy + Delta-G solvation = -27578.619271 eV Core-core repulsion = 23617.813024 eV Total energy + Delta-G solvation = -3960.806248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.98463 -41.09727 -39.97501 -38.76652 -38.02853 -35.72678 -34.33180 -33.30690 -32.89500 -32.02906 -30.59109 -30.02761 -27.40927 -25.75981 -24.72027 -24.01023 -23.44338 -22.86313 -21.40666 -20.12035 -19.80068 -18.96846 -18.16683 -17.71986 -17.35720 -16.87633 -16.63693 -16.39931 -16.27412 -16.01885 -15.80036 -15.43624 -15.33125 -14.88937 -14.70494 -14.52869 -14.25759 -14.12521 -13.56446 -13.49112 -13.47232 -13.04921 -12.99725 -12.70562 -12.52811 -12.48980 -12.38514 -12.17254 -12.02714 -11.49658 -11.32957 -11.04229 -10.83069 -10.56251 -10.03043 -9.87039 -9.09947 -8.96291 -8.44837 -6.16021 -0.05057 0.32301 0.46842 0.71623 1.30533 1.43202 1.47862 1.88602 2.06898 2.10342 2.14306 2.82370 2.95809 3.22187 3.32416 3.44366 3.94783 3.99562 4.04791 4.07047 4.09631 4.16716 4.27559 4.35682 4.43306 4.48444 4.50965 4.64235 4.85527 4.86511 4.93455 4.98085 5.05599 5.08424 5.11091 5.25499 5.33268 5.45670 5.58297 5.66486 5.68419 5.93510 6.14147 6.19654 6.36808 6.93512 7.07233 7.47899 7.78105 8.74480 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.004896 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.555163 B = 5718.152542 C = 8577.784335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 O -0.315 6.315 4 C 0.309 3.691 5 C -0.225 4.225 6 C -0.003 4.003 7 C -0.231 4.231 8 C 0.373 3.627 9 N -0.649 5.649 10 C 0.533 3.467 11 O -0.497 6.497 12 C -0.245 4.245 13 C -0.029 4.029 14 C -0.199 4.199 15 C -0.039 4.039 16 C -0.258 4.258 17 C 0.150 3.850 18 O -0.187 6.187 19 C -0.429 4.429 20 H 0.106 0.894 21 C -0.019 4.019 22 N -0.899 5.899 23 Si 1.019 2.981 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.255 1.255 27 N -0.581 5.581 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.032 0.968 33 H 0.163 0.837 34 H 0.197 0.803 35 H 0.182 0.818 36 H 0.432 0.568 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.154 0.846 40 H 0.123 0.877 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.437 12.528 0.446 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 O -0.223 6.223 4 C 0.130 3.870 5 C -0.247 4.247 6 C -0.028 4.028 7 C -0.255 4.255 8 C 0.142 3.858 9 N -0.299 5.299 10 C 0.323 3.677 11 O -0.368 6.368 12 C -0.250 4.250 13 C -0.048 4.048 14 C -0.217 4.217 15 C -0.057 4.057 16 C -0.277 4.277 17 C 0.094 3.906 18 O -0.090 6.090 19 C -0.505 4.505 20 H 0.123 0.877 21 C -0.219 4.219 22 N -0.534 5.534 23 Si 0.838 3.162 24 H -0.179 1.179 25 H -0.198 1.198 26 H -0.179 1.179 27 N -0.311 5.311 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.180 0.820 34 H 0.214 0.786 35 H 0.200 0.800 36 H 0.274 0.726 37 H 0.182 0.818 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.554 11.890 0.440 15.905 hybrid contribution -0.197 -0.774 0.012 0.799 sum 10.357 11.116 0.452 15.200 Atomic orbital electron populations 1.21733 0.90291 1.03287 1.04003 1.22261 0.96299 0.80117 1.00221 1.86133 1.17788 1.30391 1.87971 1.20221 0.83862 0.90418 0.92484 1.21336 0.97630 0.94119 1.11573 1.21718 0.90597 1.00528 0.89990 1.21758 1.03457 0.89109 1.11132 1.18595 0.86447 0.87614 0.93110 1.43451 1.10884 1.03166 1.72390 1.18834 0.88160 0.83698 0.77053 1.91020 1.15753 1.85361 1.44623 1.19209 0.94989 0.89709 1.21131 1.21344 0.89005 1.01016 0.93402 1.21193 1.01227 0.91180 1.08106 1.21463 0.92548 0.99445 0.92227 1.21294 0.95463 0.97849 1.13069 1.20069 0.84700 0.94367 0.91432 1.84167 1.16443 1.30405 1.77954 1.21966 0.92742 0.82111 1.53675 0.87703 1.26709 0.95028 1.04708 0.95468 1.70323 1.03821 1.33207 1.46015 0.84662 0.77349 0.74167 0.80048 1.17928 1.19776 1.17885 1.67079 1.06338 1.34794 1.22846 0.90601 0.90243 0.90404 0.95077 0.94918 0.81970 0.78584 0.80039 0.72605 0.81816 0.81555 0.82803 0.85949 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 10.28 71.98 0.74 -3.76 16 2 C 0.09 3.76 6.03 71.98 0.43 4.19 16 3 O -0.31 -12.34 10.11 -89.81 -0.91 -13.25 16 4 C 0.31 11.65 7.48 84.76 0.63 12.29 16 5 C -0.22 -5.77 10.04 22.49 0.23 -5.54 16 6 C 0.00 -0.06 10.16 22.42 0.23 0.17 16 7 C -0.23 -4.96 9.93 22.50 0.22 -4.74 16 8 C 0.37 12.82 7.42 132.88 0.99 13.81 16 9 N -0.65 -21.70 5.33 -311.44 -1.66 -23.36 16 10 C 0.53 24.89 7.72 86.68 0.67 25.56 16 11 O -0.50 -29.88 13.42 16.91 0.23 -29.65 16 12 C -0.25 -10.62 5.89 -19.99 -0.12 -10.74 16 13 C -0.03 -0.85 9.53 22.52 0.21 -0.64 16 14 C -0.20 -5.07 10.02 22.25 0.22 -4.85 16 15 C -0.04 -1.18 10.03 22.30 0.22 -0.96 16 16 C -0.26 -10.94 9.16 22.36 0.20 -10.73 16 17 C 0.15 7.71 6.66 22.91 0.15 7.87 16 18 O -0.19 -11.95 7.84 0.94 0.01 -11.94 16 19 C -0.43 -26.02 9.49 67.93 0.64 -25.38 16 20 H 0.11 5.70 5.21 -2.91 -0.02 5.69 16 21 C -0.02 -1.14 5.49 84.85 0.47 -0.68 16 22 N -0.90 -58.53 13.67 21.62 0.30 -58.23 16 23 Si 1.02 44.39 29.55 68.60 2.03 46.42 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 27 N -0.58 -25.26 6.73 -306.18 -2.06 -27.32 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.03 1.57 8.10 -2.39 -0.02 1.55 16 32 H 0.03 1.62 8.10 -2.39 -0.02 1.61 16 33 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.43 9.36 6.74 -92.71 -0.63 8.73 16 37 H 0.16 2.94 6.42 -2.91 -0.02 2.92 16 38 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 41 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -95.20 356.55 4.54 -90.66 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.46 Total: 30.80 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.15 Total: -4.12 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -3.42 Total: -108.92 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -0.67 Total: -54.85 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -95.20 4.54 -90.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746541236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.161 kcal (2) G-P(sol) polarization free energy of solvation -95.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds