Wall clock time and date at job start Tue Mar 31 2020 16:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47395 * 2 1 4 4 O 1.45206 * 109.47041 * 119.99708 * 2 1 3 5 5 C 1.34227 * 116.99829 * 270.00276 * 4 2 1 6 6 O 1.20822 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99941 * 179.97438 * 5 4 2 8 8 C 1.50693 * 109.47069 * 179.97438 * 7 5 4 9 9 C 1.38309 * 119.92876 * 269.72343 * 8 7 5 10 10 C 1.38101 * 120.06408 * 179.72586 * 9 8 7 11 11 C 1.38882 * 119.93399 * 0.57283 * 10 9 8 12 12 O 1.35750 * 120.07007 * 179.67944 * 11 10 9 13 13 C 1.34829 * 116.99765 * 174.48309 * 12 11 10 14 14 H 1.07998 * 120.00401 * 5.06041 * 13 12 11 15 15 C 1.38659 * 119.99763 * 185.05506 * 13 12 11 16 16 N 1.31557 * 119.99926 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99885 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46773 * 60.00691 * 17 15 13 19 19 H 1.48501 * 109.47045 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47210 * 300.00428 * 17 15 13 21 21 C 1.38881 * 119.85777 * 359.70153 * 11 10 9 22 22 C 1.38097 * 119.93586 * 0.02562 * 21 11 10 23 23 C 1.50700 * 109.47186 * 239.99536 * 2 1 3 24 24 C 1.38389 * 119.99969 * 125.02620 * 23 2 1 25 25 N 1.32130 * 119.99511 * 179.72158 * 24 23 2 26 26 C 1.32150 * 120.00210 * 0.51172 * 25 24 23 27 27 C 1.38345 * 119.99948 * 359.48794 * 26 25 24 28 28 N 1.32126 * 120.00010 * 304.99894 * 23 2 1 29 29 H 1.09006 * 109.46844 * 60.00399 * 1 2 3 30 30 H 1.08996 * 109.47395 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47250 * 300.00734 * 1 2 3 32 32 H 1.09003 * 109.46936 * 299.99610 * 7 5 4 33 33 H 1.09001 * 109.46769 * 59.99593 * 7 5 4 34 34 H 1.08000 * 119.96532 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.03125 * 180.27388 * 10 9 8 36 36 H 0.96997 * 119.99601 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.03260 * 179.97438 * 21 11 10 38 38 H 1.07995 * 119.96760 * 179.97438 * 22 21 11 39 39 H 1.08003 * 120.00409 * 359.97409 * 24 23 2 40 40 H 1.07997 * 120.00199 * 179.76694 * 26 25 24 41 41 H 1.07994 * 120.00029 * 180.27767 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2170 0.0641 2.2811 6 8 1.9981 1.2519 2.2503 7 6 2.7181 -0.5771 3.5496 8 6 2.8612 0.4732 4.6208 9 6 4.0588 1.1490 4.7690 10 6 4.1912 2.1160 5.7460 11 6 3.1240 2.4013 6.5879 12 8 3.2533 3.3467 7.5534 13 6 2.1471 3.6552 8.2598 14 1 1.2338 3.1006 8.1027 15 6 2.1821 4.6846 9.1882 16 7 3.2944 5.3605 9.3792 17 14 0.6497 5.1117 10.1674 18 1 0.2225 3.9296 10.9585 19 1 0.9473 6.2406 11.0851 20 1 -0.4389 5.5044 9.2370 21 6 1.9247 1.7169 6.4401 22 6 1.7966 0.7550 5.4575 23 6 2.0323 -0.7105 -1.2304 24 6 2.9115 -0.0722 -2.0875 25 7 3.3562 -0.6972 -3.1634 26 6 2.9535 -1.9281 -3.4262 27 6 2.0747 -2.5662 -2.5693 28 7 1.6338 -1.9431 -1.4905 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.0085 -1.3367 3.8776 33 1 3.6870 -1.0407 3.3641 34 1 4.8899 0.9230 4.1174 35 1 5.1252 2.6465 5.8584 36 1 3.3188 6.0808 10.0284 37 1 1.0931 1.9362 7.0934 38 1 0.8643 0.2222 5.3424 39 1 3.2373 0.9354 -1.8750 40 1 3.3141 -2.4376 -4.3076 41 1 1.7491 -3.5738 -2.7818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747743833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:44 Heat of formation + Delta-G solvation = -37.058068 kcal Electronic energy + Delta-G solvation = -25975.173849 eV Core-core repulsion = 22014.473503 eV Total energy + Delta-G solvation = -3960.700346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62961 -40.46396 -38.99906 -37.15549 -36.27389 -34.79678 -33.39474 -32.49983 -31.48860 -30.33552 -30.17914 -26.99582 -25.76261 -25.21271 -24.83358 -22.77221 -22.00244 -21.15114 -20.14704 -18.19018 -18.00719 -17.64923 -17.34872 -17.14809 -16.88394 -16.17838 -15.58319 -15.18051 -14.64809 -14.63765 -14.39073 -14.31189 -13.66833 -13.57716 -13.52831 -13.36988 -13.02999 -12.73118 -12.57729 -12.35922 -12.02545 -11.92661 -11.70272 -11.56794 -11.45326 -11.28181 -10.93265 -10.87908 -10.79841 -10.66367 -10.45081 -10.37030 -9.81080 -9.48075 -9.34980 -8.83503 -8.18475 -7.21393 -6.45820 -4.04446 0.21564 0.66487 2.09445 2.22579 2.32590 2.71802 3.13000 3.14766 3.17125 3.31153 3.51355 3.79561 3.96328 3.98669 4.23019 4.51056 4.59741 4.67967 4.81179 4.92550 4.94907 5.01440 5.06874 5.16578 5.20929 5.29278 5.48683 5.52927 5.63062 5.70307 5.78657 5.81591 5.94098 6.19259 6.37642 6.40046 6.67842 6.79970 6.88630 7.03135 7.20643 7.30350 7.32861 7.42657 7.79805 7.86738 7.99089 8.99551 9.69014 10.71937 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.028623 B = 0.002031 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.000556 B =13783.307114 C =14035.406318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.104 0.896 4 O -0.349 6.349 5 C 0.455 3.545 6 O -0.488 6.488 7 C -0.049 4.049 8 C -0.184 4.184 9 C -0.056 4.056 10 C -0.192 4.192 11 C 0.159 3.841 12 O -0.175 6.175 13 C -0.392 4.392 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.233 4.233 22 C -0.052 4.052 23 C 0.079 3.921 24 C 0.068 3.932 25 N -0.436 5.436 26 C 0.052 3.948 27 C 0.051 3.949 28 N -0.412 5.412 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.173 0.827 40 H 0.172 0.828 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -15.451 -21.854 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.086 3.914 3 H 0.122 0.878 4 O -0.267 6.267 5 C 0.297 3.703 6 O -0.373 6.373 7 C -0.086 4.086 8 C -0.185 4.185 9 C -0.075 4.075 10 C -0.211 4.211 11 C 0.105 3.895 12 O -0.078 6.078 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.496 5.496 17 Si 0.766 3.234 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.252 4.252 22 C -0.071 4.071 23 C -0.062 4.062 24 C -0.092 4.092 25 N -0.150 5.150 26 C -0.108 4.108 27 C -0.109 4.109 28 N -0.128 5.128 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.190 0.810 40 H 0.190 0.810 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.980 -14.714 -21.638 26.336 hybrid contribution -0.858 0.265 0.302 0.948 sum -3.838 -14.449 -21.337 26.053 Atomic orbital electron populations 1.22124 0.92591 1.03986 1.03293 1.21250 0.95448 0.95370 0.79366 0.87804 1.86673 1.77444 1.42592 1.19949 1.24323 0.74570 0.86432 0.84970 1.90701 1.46581 1.16487 1.83545 1.20104 1.03212 0.97818 0.87507 1.18625 0.95932 1.03510 1.00419 1.20422 0.96053 0.94593 0.96405 1.20158 0.98895 1.03114 0.98929 1.19404 0.93066 0.88942 0.88093 1.83977 1.35789 1.48002 1.40060 1.21294 0.89401 1.17530 1.18606 0.89051 1.25304 0.98746 0.95173 0.97300 1.70030 1.26049 1.20337 1.33198 0.85774 0.79945 0.78523 0.79156 1.19471 1.20264 1.19472 1.21107 0.99205 1.01585 1.03342 1.20532 0.96476 0.96014 0.94051 1.21933 0.95427 0.92154 0.96644 1.23683 0.93245 1.01475 0.90784 1.68536 1.20910 1.08833 1.16768 1.23892 0.95030 0.91717 1.00202 1.23877 0.95116 1.01344 0.90594 1.68250 1.20347 1.07611 1.16584 0.91003 0.90481 0.90897 0.87710 0.87832 0.87224 0.86411 0.91931 0.85457 0.87609 0.81027 0.81043 0.80961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.41 37.16 0.35 -1.23 16 2 C 0.14 1.53 2.90 -27.88 -0.08 1.45 16 3 H 0.10 1.10 6.90 -51.93 -0.36 0.74 16 4 O -0.35 -4.37 9.86 -39.25 -0.39 -4.76 16 5 C 0.45 6.40 7.92 36.01 0.29 6.68 16 6 O -0.49 -8.45 15.25 -18.75 -0.29 -8.74 16 7 C -0.05 -0.62 5.94 -29.04 -0.17 -0.80 16 8 C -0.18 -3.12 4.38 -104.57 -0.46 -3.58 16 9 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 10 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 11 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 12 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 13 C -0.39 -11.01 9.49 30.89 0.29 -10.71 16 14 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 16 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 17 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C -0.23 -5.11 9.17 -39.40 -0.36 -5.48 16 22 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 23 C 0.08 0.78 5.82 -82.41 -0.48 0.30 16 24 C 0.07 0.61 10.85 -17.37 -0.19 0.42 16 25 N -0.44 -3.96 10.50 -13.06 -0.14 -4.10 16 26 C 0.05 0.34 11.22 -17.38 -0.20 0.14 16 27 C 0.05 0.35 11.22 -17.37 -0.19 0.15 16 28 N -0.41 -4.04 10.06 -9.29 -0.09 -4.14 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.76 7.96 -51.93 -0.41 0.34 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.17 1.19 7.96 -52.48 -0.42 0.77 16 40 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -34.65 364.53 -7.09 -41.74 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.69 Total: 3.83 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.72 Total: -15.28 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.53 Total: -32.80 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.67 Total: -18.53 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.65 -7.09 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747743833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.681 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds