Wall clock time and date at job start Tue Mar 31 2020 16:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47395 * 2 1 4 4 O 1.45206 * 109.47041 * 119.99708 * 2 1 3 5 5 C 1.34227 * 116.99829 * 270.00276 * 4 2 1 6 6 O 1.20822 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99941 * 179.97438 * 5 4 2 8 8 C 1.50693 * 109.47069 * 179.97438 * 7 5 4 9 9 C 1.38309 * 119.92876 * 269.72343 * 8 7 5 10 10 C 1.38101 * 120.06408 * 179.72586 * 9 8 7 11 11 C 1.38882 * 119.93399 * 0.57283 * 10 9 8 12 12 O 1.35750 * 120.07007 * 179.67944 * 11 10 9 13 13 C 1.34829 * 116.99765 * 174.48309 * 12 11 10 14 14 H 1.07998 * 120.00401 * 5.06041 * 13 12 11 15 15 C 1.38659 * 119.99763 * 185.05506 * 13 12 11 16 16 N 1.31557 * 119.99926 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99885 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46773 * 60.00691 * 17 15 13 19 19 H 1.48501 * 109.47045 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47210 * 300.00428 * 17 15 13 21 21 C 1.38881 * 119.85777 * 359.70153 * 11 10 9 22 22 C 1.38097 * 119.93586 * 0.02562 * 21 11 10 23 23 C 1.50700 * 109.47186 * 239.99536 * 2 1 3 24 24 C 1.38389 * 119.99969 * 125.02620 * 23 2 1 25 25 N 1.32130 * 119.99511 * 179.72158 * 24 23 2 26 26 C 1.32150 * 120.00210 * 0.51172 * 25 24 23 27 27 C 1.38345 * 119.99948 * 359.48794 * 26 25 24 28 28 N 1.32126 * 120.00010 * 304.99894 * 23 2 1 29 29 H 1.09006 * 109.46844 * 60.00399 * 1 2 3 30 30 H 1.08996 * 109.47395 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47250 * 300.00734 * 1 2 3 32 32 H 1.09003 * 109.46936 * 299.99610 * 7 5 4 33 33 H 1.09001 * 109.46769 * 59.99593 * 7 5 4 34 34 H 1.08000 * 119.96532 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.03125 * 180.27388 * 10 9 8 36 36 H 0.96997 * 119.99601 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.03260 * 179.97438 * 21 11 10 38 38 H 1.07995 * 119.96760 * 179.97438 * 22 21 11 39 39 H 1.08003 * 120.00409 * 359.97409 * 24 23 2 40 40 H 1.07997 * 120.00199 * 179.76694 * 26 25 24 41 41 H 1.07994 * 120.00029 * 180.27767 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2170 0.0641 2.2811 6 8 1.9981 1.2519 2.2503 7 6 2.7181 -0.5771 3.5496 8 6 2.8612 0.4732 4.6208 9 6 4.0588 1.1490 4.7690 10 6 4.1912 2.1160 5.7460 11 6 3.1240 2.4013 6.5879 12 8 3.2533 3.3467 7.5534 13 6 2.1471 3.6552 8.2598 14 1 1.2338 3.1006 8.1027 15 6 2.1821 4.6846 9.1882 16 7 3.2944 5.3605 9.3792 17 14 0.6497 5.1117 10.1674 18 1 0.2225 3.9296 10.9585 19 1 0.9473 6.2406 11.0851 20 1 -0.4389 5.5044 9.2370 21 6 1.9247 1.7169 6.4401 22 6 1.7966 0.7550 5.4575 23 6 2.0323 -0.7105 -1.2304 24 6 2.9115 -0.0722 -2.0875 25 7 3.3562 -0.6972 -3.1634 26 6 2.9535 -1.9281 -3.4262 27 6 2.0747 -2.5662 -2.5693 28 7 1.6338 -1.9431 -1.4905 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.0085 -1.3367 3.8776 33 1 3.6870 -1.0407 3.3641 34 1 4.8899 0.9230 4.1174 35 1 5.1252 2.6465 5.8584 36 1 3.3188 6.0808 10.0284 37 1 1.0931 1.9362 7.0934 38 1 0.8643 0.2222 5.3424 39 1 3.2373 0.9354 -1.8750 40 1 3.3141 -2.4376 -4.3076 41 1 1.7491 -3.5738 -2.7818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747743833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:43 Heat of formation + Delta-G solvation = -59.335905 kcal Electronic energy + Delta-G solvation = -25976.139889 eV Core-core repulsion = 22014.473503 eV Total energy + Delta-G solvation = -3961.666385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28560 -41.52222 -40.68055 -38.58691 -37.60784 -35.47576 -34.43612 -34.09721 -32.92109 -31.80265 -31.04721 -28.48966 -27.15680 -26.38309 -25.46690 -23.77638 -23.65355 -22.34423 -21.40950 -19.86039 -19.03116 -18.87665 -18.32538 -18.19612 -17.70318 -17.26290 -16.49762 -16.30861 -16.28995 -15.99934 -15.71646 -15.51527 -15.10100 -14.98255 -14.66231 -14.37311 -14.18527 -14.06941 -13.82009 -13.59480 -13.19359 -12.96051 -12.91251 -12.65767 -12.50220 -12.44305 -12.33130 -12.28622 -12.19961 -12.14638 -11.86880 -11.53069 -11.19247 -10.79151 -10.40211 -10.08688 -9.78453 -8.95497 -8.47655 -6.15931 -0.37217 0.06830 0.58621 0.60182 1.24336 1.34380 1.44613 1.50873 1.71752 2.17588 2.68401 2.81884 2.90063 3.15813 3.27114 3.41220 3.50319 3.59830 3.74114 3.89713 3.97468 4.02443 4.12808 4.17815 4.29867 4.33776 4.42270 4.51742 4.56534 4.66504 4.69671 4.70779 4.78442 5.04423 5.08077 5.13556 5.27482 5.35126 5.41468 5.54180 5.70245 5.72947 6.02012 6.20078 6.22589 6.72213 6.79890 6.96696 7.77061 8.75266 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.028623 B = 0.002031 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.000556 B =13783.307114 C =14035.406318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 H 0.100 0.900 4 O -0.346 6.346 5 C 0.463 3.537 6 O -0.529 6.529 7 C -0.049 4.049 8 C -0.158 4.158 9 C -0.053 4.053 10 C -0.206 4.206 11 C 0.116 3.884 12 O -0.231 6.231 13 C -0.415 4.415 14 H 0.102 0.898 15 C -0.024 4.024 16 N -0.920 5.920 17 Si 1.019 2.981 18 H -0.255 1.255 19 H -0.271 1.271 20 H -0.259 1.259 21 C -0.244 4.244 22 C -0.054 4.054 23 C 0.063 3.937 24 C 0.059 3.941 25 N -0.460 5.460 26 C 0.060 3.940 27 C 0.054 3.946 28 N -0.436 5.436 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.273 0.727 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.181 0.819 40 H 0.209 0.791 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -18.784 -24.549 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.083 3.917 3 H 0.118 0.882 4 O -0.263 6.263 5 C 0.307 3.693 6 O -0.417 6.417 7 C -0.085 4.085 8 C -0.158 4.158 9 C -0.071 4.071 10 C -0.225 4.225 11 C 0.066 3.934 12 O -0.138 6.138 13 C -0.491 4.491 14 H 0.119 0.881 15 C -0.221 4.221 16 N -0.558 5.558 17 Si 0.838 3.162 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.184 1.184 21 C -0.263 4.263 22 C -0.072 4.072 23 C -0.076 4.076 24 C -0.099 4.099 25 N -0.175 5.175 26 C -0.101 4.101 27 C -0.107 4.107 28 N -0.152 5.152 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.159 0.841 39 H 0.198 0.802 40 H 0.225 0.775 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.109 -18.097 -24.375 30.636 hybrid contribution -0.446 0.946 0.703 1.260 sum -4.555 -17.151 -23.672 29.585 Atomic orbital electron populations 1.22069 0.92035 1.03902 1.03359 1.21382 0.95928 0.95314 0.79088 0.88184 1.86643 1.77104 1.42418 1.20137 1.24377 0.73596 0.85775 0.85563 1.90713 1.48538 1.18170 1.84265 1.20227 1.06198 0.96717 0.85388 1.19154 0.94505 1.02369 0.99807 1.20891 0.97893 0.92960 0.95307 1.20438 0.98218 1.04297 0.99571 1.19973 0.95203 0.89425 0.88831 1.83941 1.36633 1.50707 1.42487 1.21789 0.89940 1.18219 1.19124 0.88114 1.26619 1.02496 0.94717 0.98313 1.70180 1.28834 1.21777 1.35013 0.84645 0.75340 0.78685 0.77521 1.17930 1.19556 1.18365 1.21233 0.98149 1.02523 1.04432 1.20953 0.98489 0.94959 0.92826 1.21741 0.96555 0.92726 0.96605 1.23819 0.93196 1.02034 0.90885 1.68585 1.21734 1.10196 1.16957 1.24541 0.93870 0.90808 1.00860 1.24491 0.94314 1.02475 0.89419 1.68217 1.21156 1.07736 1.18131 0.89642 0.90532 0.92113 0.84401 0.84376 0.83344 0.86812 0.91816 0.86264 0.84086 0.80175 0.77455 0.77490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.41 71.98 0.68 -2.16 16 2 C 0.14 2.78 2.90 29.85 0.09 2.86 16 3 H 0.10 2.05 6.90 -2.39 -0.02 2.04 16 4 O -0.35 -7.75 9.86 -51.39 -0.51 -8.26 16 5 C 0.46 11.61 7.92 71.24 0.56 12.17 16 6 O -0.53 -17.39 15.25 21.98 0.34 -17.05 16 7 C -0.05 -1.01 5.94 29.10 0.17 -0.83 16 8 C -0.16 -4.86 4.38 -19.83 -0.09 -4.95 16 9 C -0.05 -1.78 9.69 22.25 0.22 -1.57 16 10 C -0.21 -9.01 9.99 22.39 0.22 -8.78 16 11 C 0.12 5.94 6.65 22.58 0.15 6.10 16 12 O -0.23 -14.23 9.76 -22.73 -0.22 -14.46 16 13 C -0.41 -24.63 9.49 67.92 0.64 -23.98 16 14 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 15 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 16 N -0.92 -57.29 13.67 21.61 0.30 -57.00 16 17 Si 1.02 43.49 29.55 68.60 2.03 45.52 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 C -0.24 -10.90 9.17 22.39 0.21 -10.69 16 22 C -0.05 -1.89 9.69 22.25 0.22 -1.68 16 23 C 0.06 1.14 5.82 42.55 0.25 1.39 16 24 C 0.06 0.97 10.85 84.68 0.92 1.89 16 25 N -0.46 -7.37 10.50 -195.22 -2.05 -9.42 16 26 C 0.06 0.58 11.22 84.67 0.95 1.53 16 27 C 0.05 0.55 11.22 84.67 0.95 1.50 16 28 N -0.44 -7.48 10.06 -183.29 -1.84 -9.32 16 29 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.08 1.38 7.96 -2.39 -0.02 1.36 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.14 2.10 8.08 -2.39 -0.02 2.09 16 33 H 0.14 2.06 8.08 -2.39 -0.02 2.05 16 34 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 35 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 38 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.18 2.37 7.96 -2.91 -0.02 2.35 16 40 H 0.21 0.34 8.06 -2.91 -0.02 0.31 16 41 H 0.21 0.46 8.06 -2.91 -0.02 0.43 16 Total: -1.00 -82.03 364.53 5.70 -76.32 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 1.07 Total: 21.78 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 6.60 Total: -28.11 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -3.60 Total: -75.74 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.39 Total: -39.77 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -82.03 5.70 -76.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747743833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.986 kcal (2) G-P(sol) polarization free energy of solvation -82.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds