Wall clock time and date at job start Tue Mar 31 2020 16:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47587 * 2 1 4 4 O 1.45199 * 109.47138 * 239.99933 * 2 1 3 5 5 C 1.34230 * 116.99982 * 90.00241 * 4 2 1 6 6 O 1.20823 * 119.99884 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00220 * 179.97438 * 5 4 2 8 8 C 1.50703 * 109.46888 * 180.02562 * 7 5 4 9 9 C 1.38302 * 119.92829 * 269.72531 * 8 7 5 10 10 C 1.38102 * 120.06213 * 179.72560 * 9 8 7 11 11 C 1.38879 * 119.93307 * 0.57775 * 10 9 8 12 12 O 1.35749 * 120.06826 * 179.67809 * 11 10 9 13 13 C 1.34836 * 117.00028 * 174.48160 * 12 11 10 14 14 H 1.08000 * 119.99721 * 5.05908 * 13 12 11 15 15 C 1.38653 * 120.00071 * 185.05796 * 13 12 11 16 16 N 1.31554 * 119.99876 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99744 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47089 * 60.00447 * 17 15 13 19 19 H 1.48503 * 109.46979 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47275 * 300.00007 * 17 15 13 21 21 C 1.38875 * 119.85995 * 359.69764 * 11 10 9 22 22 C 1.38101 * 119.93503 * 0.02562 * 21 11 10 23 23 C 1.50700 * 109.46853 * 120.00467 * 2 1 3 24 24 C 1.38391 * 120.00466 * 124.72024 * 23 2 1 25 25 N 1.32120 * 119.99992 * 179.77832 * 24 23 2 26 26 C 1.32153 * 120.00284 * 0.50201 * 25 24 23 27 27 C 1.38349 * 119.99963 * 359.72897 * 26 25 24 28 28 N 1.32123 * 120.00143 * 305.00122 * 23 2 1 29 29 H 1.09001 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47094 * 300.00094 * 1 2 3 31 31 H 1.09008 * 109.46625 * 59.99500 * 1 2 3 32 32 H 1.08994 * 109.47247 * 300.00352 * 7 5 4 33 33 H 1.09002 * 109.46807 * 60.00133 * 7 5 4 34 34 H 1.07993 * 119.96949 * 359.97438 * 9 8 7 35 35 H 1.07998 * 120.03194 * 180.27496 * 10 9 8 36 36 H 0.96996 * 119.99659 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.03057 * 179.97438 * 21 11 10 38 38 H 1.08000 * 119.96554 * 179.97438 * 22 21 11 39 39 H 1.08005 * 120.00037 * 0.02703 * 24 23 2 40 40 H 1.07998 * 120.00453 * 179.71193 * 26 25 24 41 41 H 1.07994 * 119.99879 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7194 -0.5770 -3.5492 8 6 2.8623 0.4733 -4.6204 9 6 1.7997 0.7505 -5.4611 10 6 1.9258 1.7164 -6.4401 11 6 3.1250 2.4012 -6.5876 12 8 3.2540 3.3466 -7.5532 13 6 4.4026 4.0527 -7.5689 14 1 5.2013 3.7999 -6.8873 15 6 4.5584 5.1034 -8.4602 16 7 3.5853 5.4116 -9.2901 17 14 6.1499 6.0811 -8.4824 18 1 7.2835 5.1743 -8.7951 19 1 6.0648 7.1417 -9.5183 20 1 6.3667 6.7041 -7.1520 21 6 4.1919 2.1164 -5.7455 22 6 4.0578 1.1535 -4.7647 23 6 2.0322 -0.7105 1.2304 24 6 2.9065 -1.7761 1.1059 25 7 3.3502 -2.3961 2.1848 26 6 2.9515 -2.0052 3.3826 27 6 2.0738 -0.9430 3.5070 28 7 1.6337 -0.3197 2.4279 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5140 -0.8900 32 1 3.6884 -1.0400 -3.3632 33 1 2.0105 -1.3372 -3.8774 34 1 0.8692 0.2140 -5.3494 35 1 1.0942 1.9356 -7.0934 36 1 3.6944 6.1463 -9.9138 37 1 5.1259 2.6470 -5.8580 38 1 4.8874 0.9313 -4.1098 39 1 3.2292 -2.0982 0.1268 40 1 3.3105 -2.5150 4.2644 41 1 1.7483 -0.6233 4.4858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747743850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:47 Heat of formation + Delta-G solvation = -36.931793 kcal Electronic energy + Delta-G solvation = -26017.470793 eV Core-core repulsion = 22056.775923 eV Total energy + Delta-G solvation = -3960.694870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61989 -40.52878 -39.02141 -37.21713 -36.31258 -34.91150 -33.21255 -32.50681 -31.50279 -30.37892 -30.19854 -27.05692 -25.75904 -25.15464 -24.78801 -22.71276 -22.02296 -21.25824 -20.20344 -18.18266 -18.01938 -17.72363 -17.39636 -17.05425 -16.83458 -16.20436 -15.54939 -15.29168 -14.78330 -14.61407 -14.35491 -14.30306 -13.81354 -13.61483 -13.42625 -13.22122 -13.17607 -12.74354 -12.58531 -12.38185 -11.98564 -11.95435 -11.78545 -11.61091 -11.50068 -11.29690 -11.02445 -10.91950 -10.81765 -10.67676 -10.46014 -10.38366 -9.64350 -9.46226 -9.36292 -8.84627 -8.20015 -7.23127 -6.46816 -4.05493 0.32241 0.69627 1.99268 2.21042 2.26884 2.56176 3.12455 3.14161 3.16583 3.24683 3.60675 3.92062 3.95607 4.03813 4.30507 4.49393 4.62956 4.70415 4.80544 4.83275 5.00852 5.05945 5.12674 5.16053 5.17712 5.27434 5.45854 5.54727 5.60975 5.67808 5.79746 5.80059 5.93686 6.17821 6.32030 6.37569 6.66141 6.82459 6.87003 7.01736 7.18982 7.30972 7.33124 7.41454 7.77514 7.80503 7.98037 8.98536 9.67718 10.70894 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.002095 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.960349 B =13360.532214 C =13766.447710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.109 0.891 4 O -0.360 6.360 5 C 0.457 3.543 6 O -0.483 6.483 7 C -0.048 4.048 8 C -0.186 4.186 9 C -0.056 4.056 10 C -0.192 4.192 11 C 0.159 3.841 12 O -0.175 6.175 13 C -0.392 4.392 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.861 5.861 17 Si 0.942 3.058 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.233 4.233 22 C -0.052 4.052 23 C 0.081 3.919 24 C 0.071 3.929 25 N -0.436 5.436 26 C 0.045 3.955 27 C 0.054 3.946 28 N -0.430 5.430 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.179 0.821 40 H 0.171 0.829 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 -15.178 21.691 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.086 3.914 3 H 0.127 0.873 4 O -0.278 6.278 5 C 0.299 3.701 6 O -0.367 6.367 7 C -0.086 4.086 8 C -0.187 4.187 9 C -0.074 4.074 10 C -0.211 4.211 11 C 0.105 3.895 12 O -0.078 6.078 13 C -0.468 4.468 14 H 0.110 0.890 15 C -0.165 4.165 16 N -0.496 5.496 17 Si 0.766 3.234 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.195 1.195 21 C -0.253 4.253 22 C -0.071 4.071 23 C -0.060 4.060 24 C -0.088 4.088 25 N -0.150 5.150 26 C -0.115 4.115 27 C -0.106 4.106 28 N -0.146 5.146 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.196 0.804 40 H 0.188 0.812 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.941 -14.535 21.326 25.975 hybrid contribution 0.810 0.653 0.256 1.071 sum -2.131 -13.883 21.581 25.749 Atomic orbital electron populations 1.22099 0.92046 1.03223 1.04121 1.20960 0.95249 0.96165 0.79072 0.87348 1.86490 1.77918 1.43078 1.20349 1.24327 0.74630 0.86428 0.84707 1.90721 1.46166 1.16474 1.83381 1.20118 1.03270 0.97839 0.87336 1.18613 0.96089 1.03569 1.00414 1.20422 0.96698 0.96105 0.94170 1.20164 0.96702 1.01207 1.03044 1.19407 0.93019 0.89294 0.87761 1.83977 1.39115 1.41852 1.42837 1.21295 0.91683 1.12263 1.21607 0.89049 1.25303 0.99287 0.96491 0.95430 1.70027 1.31744 1.28180 1.19612 0.85772 0.80057 0.79057 0.78509 1.19468 1.20250 1.19469 1.21109 1.00386 1.03370 1.00408 1.20532 0.95872 0.94437 0.96232 1.21832 0.95460 0.95293 0.93395 1.23689 0.93690 0.92384 0.99049 1.68551 1.20754 1.26892 0.98848 1.23857 0.95348 0.95664 0.96617 1.23769 0.95136 0.93560 0.98144 1.68028 1.21325 1.27244 0.98027 0.91700 0.89735 0.90866 0.87659 0.87567 0.87156 0.86397 0.91913 0.85465 0.87629 0.80384 0.81154 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.41 37.16 0.35 -1.16 16 2 C 0.14 1.53 3.06 -27.88 -0.09 1.44 16 3 H 0.11 1.32 7.16 -51.93 -0.37 0.95 16 4 O -0.36 -3.94 8.37 -39.26 -0.33 -4.27 16 5 C 0.46 6.02 7.92 36.01 0.29 6.31 16 6 O -0.48 -8.27 15.25 -18.75 -0.29 -8.55 16 7 C -0.05 -0.57 5.94 -29.03 -0.17 -0.74 16 8 C -0.19 -3.06 4.38 -104.57 -0.46 -3.51 16 9 C -0.06 -0.98 9.69 -39.61 -0.38 -1.36 16 10 C -0.19 -4.06 9.99 -39.39 -0.39 -4.45 16 11 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 12 O -0.17 -5.00 9.76 0.04 0.00 -5.00 16 13 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 14 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 17 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 22 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 23 C 0.08 0.82 6.17 -82.41 -0.51 0.31 16 24 C 0.07 0.69 10.56 -17.37 -0.18 0.51 16 25 N -0.44 -4.19 10.50 -13.06 -0.14 -4.32 16 26 C 0.04 0.31 11.22 -17.37 -0.20 0.11 16 27 C 0.05 0.37 11.23 -17.37 -0.19 0.18 16 28 N -0.43 -4.19 10.06 -9.29 -0.09 -4.29 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.77 7.96 -51.93 -0.41 0.35 16 31 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.11 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.11 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 2.76 5.64 -52.48 -0.30 2.47 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.18 1.52 7.01 -52.48 -0.37 1.15 16 40 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -34.01 362.55 -7.05 -41.06 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.66 Total: 4.10 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.75 Total: -15.22 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.53 Total: -33.10 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.61 Total: -17.82 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.01 -7.05 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747743850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.133 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds