Wall clock time and date at job start Tue Mar 31 2020 16:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47587 * 2 1 4 4 O 1.45199 * 109.47138 * 239.99933 * 2 1 3 5 5 C 1.34230 * 116.99982 * 90.00241 * 4 2 1 6 6 O 1.20823 * 119.99884 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00220 * 179.97438 * 5 4 2 8 8 C 1.50703 * 109.46888 * 180.02562 * 7 5 4 9 9 C 1.38302 * 119.92829 * 269.72531 * 8 7 5 10 10 C 1.38102 * 120.06213 * 179.72560 * 9 8 7 11 11 C 1.38879 * 119.93307 * 0.57775 * 10 9 8 12 12 O 1.35749 * 120.06826 * 179.67809 * 11 10 9 13 13 C 1.34836 * 117.00028 * 174.48160 * 12 11 10 14 14 H 1.08000 * 119.99721 * 5.05908 * 13 12 11 15 15 C 1.38653 * 120.00071 * 185.05796 * 13 12 11 16 16 N 1.31554 * 119.99876 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99744 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47089 * 60.00447 * 17 15 13 19 19 H 1.48503 * 109.46979 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47275 * 300.00007 * 17 15 13 21 21 C 1.38875 * 119.85995 * 359.69764 * 11 10 9 22 22 C 1.38101 * 119.93503 * 0.02562 * 21 11 10 23 23 C 1.50700 * 109.46853 * 120.00467 * 2 1 3 24 24 C 1.38391 * 120.00466 * 124.72024 * 23 2 1 25 25 N 1.32120 * 119.99992 * 179.77832 * 24 23 2 26 26 C 1.32153 * 120.00284 * 0.50201 * 25 24 23 27 27 C 1.38349 * 119.99963 * 359.72897 * 26 25 24 28 28 N 1.32123 * 120.00143 * 305.00122 * 23 2 1 29 29 H 1.09001 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47094 * 300.00094 * 1 2 3 31 31 H 1.09008 * 109.46625 * 59.99500 * 1 2 3 32 32 H 1.08994 * 109.47247 * 300.00352 * 7 5 4 33 33 H 1.09002 * 109.46807 * 60.00133 * 7 5 4 34 34 H 1.07993 * 119.96949 * 359.97438 * 9 8 7 35 35 H 1.07998 * 120.03194 * 180.27496 * 10 9 8 36 36 H 0.96996 * 119.99659 * 180.02562 * 16 15 13 37 37 H 1.08004 * 120.03057 * 179.97438 * 21 11 10 38 38 H 1.08000 * 119.96554 * 179.97438 * 22 21 11 39 39 H 1.08005 * 120.00037 * 0.02703 * 24 23 2 40 40 H 1.07998 * 120.00453 * 179.71193 * 26 25 24 41 41 H 1.07994 * 119.99879 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7194 -0.5770 -3.5492 8 6 2.8623 0.4733 -4.6204 9 6 1.7997 0.7505 -5.4611 10 6 1.9258 1.7164 -6.4401 11 6 3.1250 2.4012 -6.5876 12 8 3.2540 3.3466 -7.5532 13 6 4.4026 4.0527 -7.5689 14 1 5.2013 3.7999 -6.8873 15 6 4.5584 5.1034 -8.4602 16 7 3.5853 5.4116 -9.2901 17 14 6.1499 6.0811 -8.4824 18 1 7.2835 5.1743 -8.7951 19 1 6.0648 7.1417 -9.5183 20 1 6.3667 6.7041 -7.1520 21 6 4.1919 2.1164 -5.7455 22 6 4.0578 1.1535 -4.7647 23 6 2.0322 -0.7105 1.2304 24 6 2.9065 -1.7761 1.1059 25 7 3.3502 -2.3961 2.1848 26 6 2.9515 -2.0052 3.3826 27 6 2.0738 -0.9430 3.5070 28 7 1.6337 -0.3197 2.4279 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5140 -0.8900 32 1 3.6884 -1.0400 -3.3632 33 1 2.0105 -1.3372 -3.8774 34 1 0.8692 0.2140 -5.3494 35 1 1.0942 1.9356 -7.0934 36 1 3.6944 6.1463 -9.9138 37 1 5.1259 2.6470 -5.8580 38 1 4.8874 0.9313 -4.1098 39 1 3.2292 -2.0982 0.1268 40 1 3.3105 -2.5150 4.2644 41 1 1.7483 -0.6233 4.4858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747743850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:46 Heat of formation + Delta-G solvation = -58.827416 kcal Electronic energy + Delta-G solvation = -26018.420258 eV Core-core repulsion = 22056.775923 eV Total energy + Delta-G solvation = -3961.644336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30756 -41.53703 -40.68280 -38.60239 -37.65161 -35.59642 -34.43252 -33.94375 -32.88833 -31.79364 -31.10282 -28.50145 -27.18897 -26.35909 -25.40809 -23.70602 -23.64797 -22.40415 -21.46474 -19.85890 -19.03758 -18.87720 -18.44257 -18.19496 -17.55757 -17.22605 -16.50320 -16.37295 -16.28603 -15.94847 -15.83448 -15.51554 -15.18329 -14.97573 -14.54552 -14.47223 -14.24875 -13.97448 -13.82004 -13.60207 -13.18250 -12.95843 -12.89516 -12.64112 -12.55089 -12.49623 -12.34836 -12.31488 -12.26054 -12.15056 -11.91129 -11.53207 -11.19054 -10.79297 -10.26648 -10.08860 -9.77613 -8.95137 -8.48027 -6.16298 -0.27921 0.07367 0.56823 0.60909 1.23547 1.33806 1.42169 1.50163 1.52820 2.17119 2.63909 2.79256 2.94741 3.15901 3.35915 3.46086 3.51011 3.64494 3.74742 3.89013 3.95621 4.03492 4.04288 4.18390 4.32526 4.36857 4.45225 4.57416 4.59546 4.67208 4.70557 4.73455 4.79614 5.05310 5.06458 5.13555 5.27888 5.34135 5.41009 5.55015 5.70824 5.73523 6.01939 6.21219 6.22577 6.71410 6.78420 6.96383 7.77002 8.74923 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.002095 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.960349 B =13360.532214 C =13766.447710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.089 0.911 4 O -0.345 6.345 5 C 0.466 3.534 6 O -0.530 6.530 7 C -0.047 4.047 8 C -0.159 4.159 9 C -0.052 4.052 10 C -0.207 4.207 11 C 0.115 3.885 12 O -0.232 6.232 13 C -0.415 4.415 14 H 0.101 0.899 15 C -0.024 4.024 16 N -0.920 5.920 17 Si 1.019 2.981 18 H -0.255 1.255 19 H -0.271 1.271 20 H -0.260 1.260 21 C -0.246 4.246 22 C -0.055 4.055 23 C 0.064 3.936 24 C 0.061 3.939 25 N -0.459 5.459 26 C 0.052 3.948 27 C 0.057 3.943 28 N -0.452 5.452 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.113 0.887 36 H 0.273 0.727 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.185 0.815 40 H 0.208 0.792 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 -18.080 25.262 31.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.087 3.913 3 H 0.106 0.894 4 O -0.262 6.262 5 C 0.310 3.690 6 O -0.418 6.418 7 C -0.084 4.084 8 C -0.159 4.159 9 C -0.069 4.069 10 C -0.226 4.226 11 C 0.065 3.935 12 O -0.138 6.138 13 C -0.491 4.491 14 H 0.118 0.882 15 C -0.221 4.221 16 N -0.558 5.558 17 Si 0.838 3.162 18 H -0.179 1.179 19 H -0.195 1.195 20 H -0.184 1.184 21 C -0.265 4.265 22 C -0.073 4.073 23 C -0.075 4.075 24 C -0.097 4.097 25 N -0.173 5.173 26 C -0.108 4.108 27 C -0.103 4.103 28 N -0.169 5.169 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.202 0.798 40 H 0.225 0.775 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.169 -17.511 24.924 30.538 hybrid contribution 0.432 1.208 -0.443 1.357 sum -1.736 -16.303 24.481 29.464 Atomic orbital electron populations 1.22045 0.91356 1.03707 1.03760 1.20942 0.95799 0.95290 0.79288 0.89358 1.86469 1.77427 1.42249 1.20024 1.24451 0.73481 0.85712 0.85388 1.90739 1.48405 1.18462 1.84174 1.20272 1.06574 0.96644 0.84876 1.19187 0.94467 1.02378 0.99906 1.20919 0.98742 0.94742 0.92537 1.20456 0.95765 1.02152 1.04272 1.19988 0.95125 0.89751 0.88636 1.83940 1.39933 1.44254 1.45703 1.21781 0.92191 1.12902 1.22188 0.88166 1.26611 1.03378 0.97407 0.94751 1.70178 1.34581 1.29640 1.21398 0.84648 0.75234 0.77413 0.78921 1.17915 1.19528 1.18433 1.21236 0.99459 1.04589 1.01225 1.20970 0.97918 0.93111 0.95302 1.21669 0.96535 0.95969 0.93318 1.23759 0.93837 0.92467 0.99646 1.68584 1.21511 1.27531 0.99716 1.24509 0.94219 0.95224 0.96875 1.24417 0.94279 0.92914 0.98721 1.68015 1.22161 1.28148 0.98567 0.90704 0.89413 0.91891 0.83928 0.83639 0.83093 0.86867 0.91815 0.86411 0.84068 0.79831 0.77535 0.77396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.41 71.98 0.68 -2.03 16 2 C 0.14 2.89 3.06 29.85 0.09 2.98 16 3 H 0.09 2.14 7.16 -2.39 -0.02 2.13 16 4 O -0.34 -6.59 8.37 -51.42 -0.43 -7.02 16 5 C 0.47 10.79 7.92 71.24 0.56 11.35 16 6 O -0.53 -17.28 15.25 21.97 0.34 -16.95 16 7 C -0.05 -0.86 5.94 29.10 0.17 -0.69 16 8 C -0.16 -4.70 4.38 -19.83 -0.09 -4.78 16 9 C -0.05 -1.70 9.69 22.25 0.22 -1.48 16 10 C -0.21 -8.97 9.99 22.39 0.22 -8.75 16 11 C 0.12 5.88 6.65 22.58 0.15 6.03 16 12 O -0.23 -14.27 9.76 -22.78 -0.22 -14.49 16 13 C -0.41 -24.65 9.49 67.92 0.64 -24.00 16 14 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 15 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 16 N -0.92 -57.33 13.67 21.61 0.30 -57.03 16 17 Si 1.02 43.59 29.55 68.60 2.03 45.61 16 18 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 C -0.25 -10.91 9.17 22.39 0.21 -10.71 16 22 C -0.06 -1.88 9.69 22.25 0.22 -1.67 16 23 C 0.06 1.20 6.17 42.55 0.26 1.46 16 24 C 0.06 1.06 10.56 84.69 0.89 1.95 16 25 N -0.46 -7.63 10.50 -195.22 -2.05 -9.68 16 26 C 0.05 0.54 11.22 84.67 0.95 1.49 16 27 C 0.06 0.61 11.23 84.67 0.95 1.56 16 28 N -0.45 -7.92 10.06 -183.29 -1.84 -9.76 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.50 7.96 -2.39 -0.02 1.48 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.14 1.73 8.08 -2.39 -0.02 1.71 16 33 H 0.15 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 35 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 38 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 39 H 0.18 2.71 7.01 -2.91 -0.02 2.69 16 40 H 0.21 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.21 0.53 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -82.05 362.55 5.78 -76.27 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 1.07 Total: 21.24 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 6.60 Total: -28.20 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -3.60 Total: -76.47 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.32 Total: -38.45 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -82.05 5.78 -76.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747743850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.440 kcal (2) G-P(sol) polarization free energy of solvation -82.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds