Wall clock time and date at job start Tue Mar 31 2020 16:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47177 * 2 1 4 4 C 1.50699 * 109.47310 * 119.99803 * 2 1 3 5 5 H 1.08000 * 120.00340 * 119.99917 * 4 2 1 6 6 C 1.37883 * 119.99748 * 299.99966 * 4 2 1 7 7 N 1.31518 * 119.99859 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00010 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47336 * 89.99788 * 8 6 4 10 10 H 1.48507 * 109.46722 * 209.99478 * 8 6 4 11 11 H 1.48502 * 109.47317 * 329.99365 * 8 6 4 12 12 N 1.46501 * 109.47535 * 240.00066 * 2 1 3 13 13 C 1.46504 * 119.99512 * 300.00032 * 12 2 1 14 14 C 1.38537 * 120.00421 * 120.00031 * 12 2 1 15 15 N 1.28224 * 124.90354 * 180.02562 * 14 12 2 16 16 N 1.38855 * 116.65337 * 179.97438 * 15 14 12 17 17 C 1.38319 * 139.63303 * 179.97438 * 16 15 14 18 18 C 1.35722 * 107.04265 * 180.02562 * 17 16 15 19 19 C 1.48327 * 126.01526 * 180.02562 * 18 17 16 20 20 C 1.39379 * 120.12484 * 359.69767 * 19 18 17 21 21 C 1.38010 * 119.87404 * 179.74253 * 20 19 18 22 22 C 1.38337 * 120.12327 * 0.51371 * 21 20 19 23 23 C 1.38330 * 120.25005 * 359.76343 * 22 21 20 24 24 C 1.38009 * 120.12564 * 359.97438 * 23 22 21 25 25 N 1.34538 * 107.96751 * 359.97438 * 18 17 16 26 26 C 1.32264 * 109.01387 * 0.02562 * 25 18 17 27 27 S 1.75755 * 124.90155 * 359.97404 * 14 12 2 28 28 H 1.09000 * 109.46795 * 59.99832 * 1 2 3 29 29 H 1.08992 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47002 * 300.00168 * 1 2 3 31 31 H 0.96996 * 119.99911 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46995 * 269.99700 * 13 12 2 33 33 H 1.09002 * 109.47314 * 29.99821 * 13 12 2 34 34 H 1.08998 * 109.46673 * 149.99644 * 13 12 2 35 35 H 1.08003 * 126.48447 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.06533 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.93946 * 180.25014 * 21 20 19 38 38 H 1.07994 * 119.87425 * 179.73936 * 22 21 20 39 39 H 1.07998 * 119.93588 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.06304 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.8149 -0.0174 -2.1081 15 7 3.2921 -0.5282 -3.1830 16 7 4.0712 0.3041 -3.9757 17 6 4.7836 0.2668 -5.1607 18 6 5.3270 1.4980 -5.3371 19 6 6.1747 1.9218 -6.4780 20 6 6.4840 1.0183 -7.4933 21 6 7.2688 1.4198 -8.5552 22 6 7.7572 2.7130 -8.6077 23 6 7.4582 3.6122 -7.5999 24 6 6.6698 3.2234 -6.5360 25 7 4.9603 2.2665 -4.2955 26 6 4.2065 1.5517 -3.4768 27 16 3.3162 1.6606 -1.9592 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9026 -0.5282 4.4376 32 1 2.4158 -2.7377 -0.9716 33 1 0.6904 -2.3002 -0.9846 34 1 1.6238 -2.2852 -2.5001 35 1 4.8879 -0.5815 -5.8209 36 1 6.1070 0.0071 -7.4511 37 1 7.5058 0.7217 -9.3445 38 1 8.3744 3.0216 -9.4383 39 1 7.8418 4.6207 -7.6462 40 1 6.4367 3.9264 -5.7500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750030337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:43 Heat of formation + Delta-G solvation = 169.833753 kcal Electronic energy + Delta-G solvation = -24052.406536 eV Core-core repulsion = 20575.723315 eV Total energy + Delta-G solvation = -3476.683221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16372 -39.11226 -38.30827 -36.21928 -33.18321 -31.92748 -31.29457 -30.85177 -29.98941 -28.12964 -26.84495 -25.45064 -23.75641 -23.38712 -22.46706 -21.09927 -20.41539 -19.62088 -18.80336 -17.18395 -16.95232 -16.28389 -16.06191 -15.81389 -15.42293 -14.98571 -14.68394 -14.42473 -14.06657 -13.78494 -13.50609 -13.45727 -13.25514 -12.98971 -12.55286 -12.22893 -12.16781 -12.08747 -11.77633 -11.58514 -11.36494 -11.17937 -10.93824 -10.57575 -10.51079 -10.37646 -9.99644 -9.89109 -9.79669 -9.61863 -9.02698 -8.92623 -8.51908 -7.85917 -7.50238 -6.42151 -4.47985 0.68897 0.92032 1.33228 1.51956 1.55667 1.89271 2.33525 2.94640 3.02110 3.11106 3.17507 3.52402 3.92280 4.07058 4.29967 4.55218 4.83716 4.86819 4.87112 5.03273 5.18913 5.37148 5.46554 5.48453 5.62243 5.75487 5.78575 5.86997 5.97811 5.98243 6.00342 6.03580 6.18116 6.21400 6.30601 6.40927 6.50042 6.58375 6.64605 6.89354 7.01575 7.15080 7.40068 7.68789 7.92337 8.13968 8.59775 9.13724 10.69610 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.028604 B = 0.002647 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.645793 B =10576.330137 C =11082.645769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.244 3.756 3 H 0.045 0.955 4 C -0.541 4.541 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.880 5.880 8 Si 0.877 3.123 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.529 5.529 13 C 0.103 3.897 14 C 0.361 3.639 15 N -0.361 5.361 16 N -0.276 5.276 17 C 0.008 3.992 18 C 0.055 3.945 19 C 0.010 3.990 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.094 4.094 25 N -0.438 5.438 26 C 0.099 3.901 27 S 0.165 5.835 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.271 0.729 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.183 0.817 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 3.814 -18.424 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.579 4.579 5 H 0.105 0.895 6 C -0.122 4.122 7 N -0.516 5.516 8 Si 0.706 3.294 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.245 5.245 13 C -0.041 4.041 14 C -0.024 4.024 15 N -0.196 5.196 16 N -0.046 5.046 17 C -0.131 4.131 18 C -0.078 4.078 19 C 0.008 3.992 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.113 4.113 25 N -0.161 5.161 26 C -0.271 4.271 27 S 0.398 5.602 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.200 0.800 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.752 4.567 -17.471 18.443 hybrid contribution -0.534 -0.479 -0.303 0.779 sum 3.218 4.087 -17.773 18.519 Atomic orbital electron populations 1.22535 0.97561 1.02291 1.00132 1.19586 0.91240 0.92829 0.82056 0.93745 1.21027 1.34006 1.15148 0.87739 0.89548 1.24850 0.95346 0.96568 0.95462 1.69840 1.43856 1.39648 0.98209 0.87007 0.80836 0.83457 0.78084 1.19844 1.21477 1.18820 1.46579 1.46921 1.11629 1.19356 1.21690 1.01701 0.79777 1.00976 1.24384 0.93272 0.93779 0.90977 1.74208 1.21686 1.15628 1.08063 1.47176 1.33709 1.06972 1.16783 1.22333 1.01412 1.00975 0.88419 1.18930 1.03149 0.89943 0.95781 1.17738 0.95993 0.93974 0.91458 1.21099 0.98932 0.99209 0.93767 1.21001 0.98242 0.96353 0.98135 1.21183 1.00359 0.93900 0.98905 1.21103 0.98699 0.99702 0.94344 1.21260 0.96359 0.95445 0.98228 1.70469 1.13335 1.30093 1.02240 1.26676 1.09394 0.87422 1.03585 1.85754 1.52889 1.07203 1.14332 0.94081 0.91503 0.92235 0.91877 0.92091 0.89943 0.91581 0.79966 0.85810 0.85913 0.86239 0.85954 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 8.65 37.16 0.32 -2.74 16 2 C 0.24 5.02 2.27 -69.08 -0.16 4.87 16 3 H 0.05 0.94 5.41 -51.93 -0.28 0.66 16 4 C -0.54 -13.30 8.95 -34.44 -0.31 -13.61 16 5 H 0.09 2.35 7.89 -52.49 -0.41 1.93 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.88 -24.35 13.96 55.43 0.77 -23.58 16 8 Si 0.88 19.20 24.37 -169.99 -4.14 15.05 16 9 H -0.27 -5.71 6.87 56.52 0.39 -5.32 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.26 -5.44 6.53 56.52 0.37 -5.07 16 12 N -0.53 -9.91 2.86 -176.49 -0.50 -10.41 16 13 C 0.10 1.65 9.80 59.85 0.59 2.23 16 14 C 0.36 6.78 7.93 -88.93 -0.70 6.08 16 15 N -0.36 -6.78 11.22 30.48 0.34 -6.44 16 16 N -0.28 -5.05 4.38 -12.23 -0.05 -5.10 16 17 C 0.01 0.12 11.42 -15.52 -0.18 -0.06 16 18 C 0.06 0.88 6.84 -83.43 -0.57 0.31 16 19 C 0.01 0.13 5.88 -104.90 -0.62 -0.49 16 20 C -0.11 -1.18 9.56 -39.24 -0.38 -1.55 16 21 C -0.12 -1.08 10.03 -39.63 -0.40 -1.48 16 22 C -0.13 -1.11 10.04 -39.51 -0.40 -1.51 16 23 C -0.12 -1.20 10.03 -39.63 -0.40 -1.59 16 24 C -0.09 -1.16 9.70 -39.24 -0.38 -1.54 16 25 N -0.44 -7.99 11.00 -10.08 -0.11 -8.10 16 26 C 0.10 1.86 8.98 -88.88 -0.80 1.06 16 27 S 0.16 2.97 21.59 -107.50 -2.32 0.65 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.14 6.66 -51.93 -0.35 0.80 16 30 H 0.06 1.14 3.27 -51.93 -0.17 0.97 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.07 0.96 7.61 -51.93 -0.40 0.56 16 35 H 0.18 2.12 7.27 -52.48 -0.38 1.73 16 36 H 0.12 1.07 7.00 -52.48 -0.37 0.70 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.68 7.85 -52.49 -0.41 1.27 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -29.17 343.56 -9.70 -38.87 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.40 Total: 1.86 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -4.47 Total: -7.98 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.45 Total: -53.63 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.14 Total: 15.05 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.32 Total: 0.65 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.17 -9.70 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750030337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.708 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds