Wall clock time and date at job start Tue Mar 31 2020 16:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47177 * 2 1 4 4 C 1.50699 * 109.47310 * 119.99803 * 2 1 3 5 5 H 1.08000 * 120.00340 * 119.99917 * 4 2 1 6 6 C 1.37883 * 119.99748 * 299.99966 * 4 2 1 7 7 N 1.31518 * 119.99859 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00010 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47336 * 89.99788 * 8 6 4 10 10 H 1.48507 * 109.46722 * 209.99478 * 8 6 4 11 11 H 1.48502 * 109.47317 * 329.99365 * 8 6 4 12 12 N 1.46501 * 109.47535 * 240.00066 * 2 1 3 13 13 C 1.46504 * 119.99512 * 300.00032 * 12 2 1 14 14 C 1.38537 * 120.00421 * 120.00031 * 12 2 1 15 15 N 1.28224 * 124.90354 * 180.02562 * 14 12 2 16 16 N 1.38855 * 116.65337 * 179.97438 * 15 14 12 17 17 C 1.38319 * 139.63303 * 179.97438 * 16 15 14 18 18 C 1.35722 * 107.04265 * 180.02562 * 17 16 15 19 19 C 1.48327 * 126.01526 * 180.02562 * 18 17 16 20 20 C 1.39379 * 120.12484 * 359.69767 * 19 18 17 21 21 C 1.38010 * 119.87404 * 179.74253 * 20 19 18 22 22 C 1.38337 * 120.12327 * 0.51371 * 21 20 19 23 23 C 1.38330 * 120.25005 * 359.76343 * 22 21 20 24 24 C 1.38009 * 120.12564 * 359.97438 * 23 22 21 25 25 N 1.34538 * 107.96751 * 359.97438 * 18 17 16 26 26 C 1.32264 * 109.01387 * 0.02562 * 25 18 17 27 27 S 1.75755 * 124.90155 * 359.97404 * 14 12 2 28 28 H 1.09000 * 109.46795 * 59.99832 * 1 2 3 29 29 H 1.08992 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47002 * 300.00168 * 1 2 3 31 31 H 0.96996 * 119.99911 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46995 * 269.99700 * 13 12 2 33 33 H 1.09002 * 109.47314 * 29.99821 * 13 12 2 34 34 H 1.08998 * 109.46673 * 149.99644 * 13 12 2 35 35 H 1.08003 * 126.48447 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.06533 * 359.97438 * 20 19 18 37 37 H 1.08000 * 119.93946 * 180.25014 * 21 20 19 38 38 H 1.07994 * 119.87425 * 179.73936 * 22 21 20 39 39 H 1.07998 * 119.93588 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.06304 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8728 2.6997 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.8149 -0.0174 -2.1081 15 7 3.2921 -0.5282 -3.1830 16 7 4.0712 0.3041 -3.9757 17 6 4.7836 0.2668 -5.1607 18 6 5.3270 1.4980 -5.3371 19 6 6.1747 1.9218 -6.4780 20 6 6.4840 1.0183 -7.4933 21 6 7.2688 1.4198 -8.5552 22 6 7.7572 2.7130 -8.6077 23 6 7.4582 3.6122 -7.5999 24 6 6.6698 3.2234 -6.5360 25 7 4.9603 2.2665 -4.2955 26 6 4.2065 1.5517 -3.4768 27 16 3.3162 1.6606 -1.9592 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9026 -0.5282 4.4376 32 1 2.4158 -2.7377 -0.9716 33 1 0.6904 -2.3002 -0.9846 34 1 1.6238 -2.2852 -2.5001 35 1 4.8879 -0.5815 -5.8209 36 1 6.1070 0.0071 -7.4511 37 1 7.5058 0.7217 -9.3445 38 1 8.3744 3.0216 -9.4383 39 1 7.8418 4.6207 -7.6462 40 1 6.4367 3.9264 -5.7500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750030337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:43 Heat of formation + Delta-G solvation = 154.854173 kcal Electronic energy + Delta-G solvation = -24053.056099 eV Core-core repulsion = 20575.723315 eV Total energy + Delta-G solvation = -3477.332785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47140 -40.10868 -39.58450 -37.64345 -34.92849 -33.13696 -32.51084 -31.85893 -31.32224 -29.30086 -28.19223 -27.23624 -25.11597 -24.42296 -23.45060 -22.46653 -21.59438 -20.92896 -20.19993 -18.90882 -18.14424 -17.53729 -17.40803 -17.23409 -16.63269 -16.20623 -15.80088 -15.69978 -15.41808 -15.06990 -14.91098 -14.42197 -14.20721 -14.17724 -14.04336 -13.74222 -13.51858 -13.39278 -13.16032 -13.11499 -12.56151 -12.23674 -12.13010 -12.03052 -11.89158 -11.73748 -11.56085 -11.45504 -11.15856 -11.07717 -10.84051 -9.80027 -9.65275 -9.26009 -8.78053 -8.38595 -6.48226 -0.70425 -0.11687 0.11786 0.32210 0.53528 0.55825 0.93650 1.30060 1.37191 1.44950 1.83813 2.12852 2.24577 2.94564 3.04247 3.06134 3.44811 3.94936 4.08090 4.13882 4.19537 4.25124 4.31296 4.37844 4.49130 4.53319 4.61396 4.62031 4.72052 4.78968 4.80241 4.89339 4.95680 5.19802 5.21505 5.25436 5.32801 5.56867 5.63065 5.66726 5.69306 5.90091 6.12782 6.18044 6.38576 6.56884 6.60838 7.17697 8.76871 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.028604 B = 0.002647 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.645793 B =10576.330137 C =11082.645769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.247 3.753 3 H 0.043 0.957 4 C -0.536 4.536 5 H 0.047 0.953 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.931 3.069 9 H -0.253 1.253 10 H -0.297 1.297 11 H -0.242 1.242 12 N -0.535 5.535 13 C 0.103 3.897 14 C 0.353 3.647 15 N -0.364 5.364 16 N -0.286 5.286 17 C 0.007 3.993 18 C 0.054 3.946 19 C -0.021 4.021 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.114 4.114 25 N -0.457 5.457 26 C 0.073 3.927 27 S 0.166 5.834 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.271 0.729 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.220 0.780 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 4.366 -21.737 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.575 4.575 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.756 3.244 9 H -0.178 1.178 10 H -0.225 1.225 11 H -0.166 1.166 12 N -0.251 5.251 13 C -0.040 4.040 14 C -0.032 4.032 15 N -0.198 5.198 16 N -0.058 5.058 17 C -0.130 4.130 18 C -0.079 4.079 19 C -0.023 4.023 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.133 4.133 25 N -0.181 5.181 26 C -0.296 4.296 27 S 0.399 5.601 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.236 0.764 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.624 5.115 -20.831 21.754 hybrid contribution -0.276 -0.671 0.513 0.889 sum 3.348 4.443 -20.319 21.067 Atomic orbital electron populations 1.22444 0.95137 1.03397 1.01148 1.19409 0.92962 0.92172 0.81029 0.93912 1.21188 1.32782 1.13854 0.89661 0.93508 1.25644 0.96771 0.99550 0.95041 1.69987 1.46261 1.41944 0.98859 0.86129 0.79953 0.80038 0.78234 1.17792 1.22456 1.16585 1.46517 1.47204 1.12417 1.18989 1.21800 1.01883 0.78274 1.02083 1.24444 0.93379 0.94128 0.91211 1.74103 1.21571 1.16038 1.08092 1.47379 1.34193 1.06733 1.17518 1.23035 1.00195 1.02012 0.87792 1.19486 1.02865 0.89840 0.95710 1.17874 0.97430 0.95099 0.91888 1.21367 0.98758 0.99596 0.93269 1.21419 0.96984 0.97026 0.98123 1.21619 0.99461 0.93555 0.98971 1.21361 0.98014 1.01071 0.93786 1.21282 0.97742 0.95229 0.99021 1.70452 1.13585 1.30993 1.03102 1.26731 1.10655 0.88056 1.04173 1.85561 1.53011 1.06895 1.14606 0.91302 0.90536 0.92773 0.91955 0.93390 0.88603 0.89875 0.76383 0.83965 0.82763 0.83135 0.83995 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 8.65 71.98 0.62 -4.97 16 2 C 0.25 9.96 2.27 44.24 0.10 10.06 16 3 H 0.04 1.77 5.41 -2.38 -0.01 1.76 16 4 C -0.54 -26.90 8.95 25.60 0.23 -26.67 16 5 H 0.05 2.66 7.89 -2.91 -0.02 2.64 16 6 C 0.03 1.58 5.45 84.66 0.46 2.04 16 7 N -0.93 -53.34 13.96 21.45 0.30 -53.04 16 8 Si 0.93 39.02 24.37 68.60 1.67 40.69 16 9 H -0.25 -9.77 6.87 99.48 0.68 -9.09 16 10 H -0.30 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.24 -9.24 6.53 99.48 0.65 -8.59 16 12 N -0.53 -19.79 2.86 -712.30 -2.03 -21.82 16 13 C 0.10 3.24 9.80 127.77 1.25 4.49 16 14 C 0.35 13.19 7.93 179.76 1.43 14.61 16 15 N -0.36 -13.46 11.22 -57.47 -0.64 -14.10 16 16 N -0.29 -10.34 4.38 -192.62 -0.84 -11.19 16 17 C 0.01 0.21 11.42 83.09 0.95 1.16 16 18 C 0.05 1.70 6.84 40.83 0.28 1.98 16 19 C -0.02 -0.55 5.88 -20.04 -0.12 -0.66 16 20 C -0.11 -2.06 9.56 22.49 0.22 -1.84 16 21 C -0.12 -1.68 10.03 22.24 0.22 -1.45 16 22 C -0.12 -1.67 10.04 22.32 0.22 -1.44 16 23 C -0.12 -2.22 10.03 22.24 0.22 -1.99 16 24 C -0.11 -2.77 9.70 22.49 0.22 -2.55 16 25 N -0.46 -16.92 11.00 -185.81 -2.04 -18.96 16 26 C 0.07 2.75 8.98 179.74 1.61 4.36 16 27 S 0.17 6.01 21.59 -56.49 -1.22 4.79 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 29 H 0.08 2.45 6.66 -2.39 -0.02 2.43 16 30 H 0.05 1.92 3.27 -2.39 -0.01 1.92 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 2.72 6.43 -2.39 -0.02 2.70 16 34 H 0.08 2.31 7.61 -2.39 -0.02 2.29 16 35 H 0.22 4.51 7.27 -2.91 -0.02 4.49 16 36 H 0.14 1.99 7.00 -2.91 -0.02 1.97 16 37 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 38 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.11 3.05 7.85 -2.91 -0.02 3.02 16 Total: -1.00 -65.61 343.56 4.11 -61.50 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.00 Total: 15.01 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 7.92 Total: -2.88 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -5.27 Total: -119.12 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.67 Total: 40.69 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.22 Total: 4.79 kcal Total: -65.61 4.11 -61.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750030337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.359 kcal (2) G-P(sol) polarization free energy of solvation -65.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds