Wall clock time and date at job start Tue Mar 31 2020 16:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47461 * 2 1 4 4 C 1.46499 * 119.99767 * 269.72281 * 3 2 1 5 5 C 1.50694 * 109.47250 * 270.27346 * 4 3 2 6 6 H 1.07999 * 119.99904 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00013 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00477 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47229 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47069 * 120.00050 * 9 7 5 12 12 H 1.48503 * 109.47259 * 239.99542 * 9 7 5 13 13 C 1.38545 * 120.00162 * 89.99542 * 3 2 1 14 14 N 1.28226 * 124.89921 * 359.45156 * 13 3 2 15 15 N 1.38857 * 116.64871 * 179.79153 * 14 13 3 16 16 C 1.38325 * 139.62884 * 180.12255 * 15 14 13 17 17 C 1.35725 * 107.03782 * 180.35152 * 16 15 14 18 18 C 1.48333 * 126.01385 * 180.02562 * 17 16 15 19 19 C 1.39380 * 120.12166 * 359.72499 * 18 17 16 20 20 C 1.38009 * 119.86834 * 179.74721 * 19 18 17 21 21 C 1.38329 * 120.12750 * 0.52952 * 20 19 18 22 22 C 1.38333 * 120.24916 * 359.74402 * 21 20 19 23 23 C 1.38004 * 120.12714 * 359.97438 * 22 21 20 24 24 N 1.34542 * 107.97155 * 359.97438 * 17 16 15 25 25 C 1.32275 * 109.01094 * 0.02925 * 24 17 16 26 26 S 1.75744 * 124.90104 * 179.75399 * 13 3 2 27 27 H 1.09003 * 109.47256 * 300.00119 * 1 2 3 28 28 H 1.09001 * 109.46864 * 60.00500 * 1 2 3 29 29 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47116 * 239.99346 * 2 1 3 31 31 H 1.09008 * 109.46576 * 119.99762 * 2 1 3 32 32 H 1.09003 * 109.47296 * 30.27471 * 4 3 2 33 33 H 1.08997 * 109.47026 * 150.27024 * 4 3 2 34 34 H 0.96998 * 120.00607 * 180.02562 * 8 7 5 35 35 H 1.07998 * 126.48355 * 0.37122 * 16 15 14 36 36 H 1.07997 * 120.06476 * 0.02562 * 19 18 17 37 37 H 1.08003 * 119.93217 * 180.29757 * 20 19 18 38 38 H 1.07997 * 119.87594 * 179.72319 * 21 20 19 39 39 H 1.08001 * 119.93488 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.06343 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2684 2.0697 -1.2687 5 6 3.6916 1.8266 -1.7003 6 1 4.3445 1.2195 -1.0907 7 6 4.1602 2.3791 -2.8734 8 7 3.3651 3.1179 -3.6160 9 14 5.9242 2.0771 -3.4086 10 1 6.6057 1.2191 -2.4064 11 1 5.9314 1.3978 -4.7292 12 1 6.6381 3.3749 -3.5158 13 6 2.2493 2.0343 1.1998 14 7 2.0584 1.5250 2.3610 15 7 2.3509 2.3333 3.4514 16 6 2.3308 2.2862 4.8337 17 6 2.7619 3.4936 5.2791 18 6 2.9043 3.8995 6.6987 19 6 2.5768 3.0066 7.7177 20 6 2.7163 3.3879 9.0367 21 6 3.1697 4.6571 9.3484 22 6 3.4908 5.5492 8.3411 23 6 3.3607 5.1769 7.0186 24 7 3.0383 4.2572 4.2065 25 6 2.7920 3.5626 3.1081 26 16 2.8389 3.6831 1.3499 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.5877 1.6878 -2.0297 33 1 2.1055 3.1396 -1.1397 34 1 3.6946 3.5063 -4.4414 35 1 2.0294 1.4471 5.4433 36 1 2.2189 2.0169 7.4755 37 1 2.4675 2.6952 9.8271 38 1 3.2731 4.9527 10.3819 39 1 3.8439 6.5390 8.5902 40 1 3.6121 5.8742 6.2330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756968906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:37 Heat of formation + Delta-G solvation = 152.747972 kcal Electronic energy + Delta-G solvation = -23970.565961 eV Core-core repulsion = 20493.141845 eV Total energy + Delta-G solvation = -3477.424116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.03852 -39.04664 -38.12757 -35.84020 -33.08113 -31.91635 -31.20346 -30.79389 -30.23827 -28.23045 -26.82473 -24.17329 -23.55728 -23.26173 -22.68298 -21.51313 -20.30707 -19.42101 -18.68122 -17.02550 -16.76016 -16.16054 -15.92735 -15.69790 -15.27509 -14.83843 -14.58170 -14.36520 -14.05384 -13.67692 -13.46561 -13.41002 -13.22555 -12.96514 -12.37890 -12.24832 -12.01863 -11.76821 -11.61007 -11.29600 -11.17503 -11.11471 -10.93945 -10.74769 -10.45869 -10.40420 -10.21949 -9.93831 -9.72617 -9.65004 -8.97951 -8.75641 -8.42788 -7.71943 -7.41119 -6.35377 -4.45964 0.89253 0.99005 1.38026 1.69016 1.75336 2.04700 2.46530 3.03466 3.14093 3.23511 3.27238 3.68177 3.98349 4.20936 4.40641 4.63801 4.89942 4.91417 4.98424 5.08399 5.25616 5.30242 5.42701 5.48673 5.53723 5.62914 5.74661 5.84921 5.97768 6.03986 6.05994 6.14556 6.26910 6.39971 6.45445 6.51158 6.58245 6.69308 6.82369 6.94761 7.23024 7.55298 7.59493 7.75950 7.81878 8.08098 8.60843 9.23407 10.70593 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.002859 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.095556 B = 9790.059268 C =10751.042876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.123 3.877 3 N -0.536 5.536 4 C 0.246 3.754 5 C -0.548 4.548 6 H 0.066 0.934 7 C 0.070 3.930 8 N -0.887 5.887 9 Si 0.901 3.099 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.363 3.637 14 N -0.369 5.369 15 N -0.276 5.276 16 C 0.004 3.996 17 C 0.054 3.946 18 C 0.012 3.988 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.095 4.095 24 N -0.441 5.441 25 C 0.095 3.905 26 S 0.190 5.810 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.269 0.731 35 H 0.181 0.819 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -1.211 16.654 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.002 4.002 3 N -0.253 5.253 4 C 0.127 3.873 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.727 3.273 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.205 1.205 13 C -0.022 4.022 14 N -0.205 5.205 15 N -0.046 5.046 16 C -0.136 4.136 17 C -0.080 4.080 18 C 0.010 3.990 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.113 4.113 24 N -0.164 5.164 25 C -0.275 4.275 26 S 0.424 5.576 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.198 0.802 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.530 -0.328 15.742 16.137 hybrid contribution 0.549 -1.288 0.111 1.405 sum -2.980 -1.616 15.854 16.212 Atomic orbital electron populations 1.22161 0.96180 1.01814 1.02349 1.21521 0.93878 0.81358 1.03441 1.47025 1.64219 1.13276 1.00742 1.19745 0.98006 0.92455 0.77068 1.21453 0.96200 1.33564 1.07466 0.91573 1.24924 0.98351 0.94304 0.95875 1.69909 1.35951 1.32360 1.14222 0.86386 0.83807 0.78440 0.78620 1.19509 1.20668 1.20489 1.24395 0.93329 0.94187 0.90240 1.74232 1.37759 1.17045 0.91418 1.47204 1.43653 1.08577 1.05172 1.22282 1.11814 1.01373 0.78125 1.18922 1.06319 0.90623 0.92118 1.17754 0.99059 0.94159 0.88015 1.21094 1.00524 0.99278 0.92196 1.20991 1.00295 0.96556 0.95922 1.21169 1.00061 0.94096 0.99140 1.21101 1.00432 0.99689 0.92628 1.21268 0.97873 0.95608 0.96585 1.70475 1.21885 1.29840 0.94234 1.26914 1.10777 0.88255 1.01553 1.86110 1.74926 1.09253 0.87267 0.92710 0.92120 0.91759 0.89163 0.90700 0.92674 0.94293 0.92175 0.80177 0.85853 0.85975 0.86289 0.85985 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.12 1.95 6.24 -4.04 -0.03 1.92 16 3 N -0.54 -10.29 2.56 -176.30 -0.45 -10.74 16 4 C 0.25 5.41 5.15 -5.20 -0.03 5.38 16 5 C -0.55 -13.45 9.39 -34.44 -0.32 -13.77 16 6 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -23.33 13.29 55.43 0.74 -22.59 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.36 7.12 7.92 -88.92 -0.70 6.41 16 14 N -0.37 -7.15 11.22 30.48 0.34 -6.81 16 15 N -0.28 -5.26 4.38 -12.23 -0.05 -5.31 16 16 C 0.00 0.06 11.42 -15.52 -0.18 -0.12 16 17 C 0.05 0.89 6.84 -83.42 -0.57 0.32 16 18 C 0.01 0.16 5.88 -104.89 -0.62 -0.46 16 19 C -0.11 -1.24 9.56 -39.24 -0.38 -1.62 16 20 C -0.12 -1.13 10.03 -39.63 -0.40 -1.53 16 21 C -0.13 -1.18 10.04 -39.51 -0.40 -1.58 16 22 C -0.12 -1.26 10.03 -39.63 -0.40 -1.66 16 23 C -0.09 -1.23 9.70 -39.24 -0.38 -1.61 16 24 N -0.44 -8.43 11.00 -10.08 -0.11 -8.54 16 25 C 0.10 1.88 8.98 -88.87 -0.80 1.08 16 26 S 0.19 3.70 21.90 -107.50 -2.35 1.35 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.07 1.17 7.62 -51.92 -0.40 0.77 16 32 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.04 0.91 7.06 -51.93 -0.37 0.54 16 34 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.18 2.21 7.27 -52.49 -0.38 1.83 16 36 H 0.12 1.13 7.00 -52.49 -0.37 0.76 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 1.78 7.86 -52.49 -0.41 1.36 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -28.48 359.75 -11.24 -39.72 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.84 Total: 0.07 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -4.91 Total: -7.43 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.46 Total: -54.00 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.35 Total: 1.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.48 -11.24 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756968906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.473 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds