Wall clock time and date at job start Tue Mar 31 2020 16:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47461 * 2 1 4 4 C 1.46499 * 119.99767 * 269.72281 * 3 2 1 5 5 C 1.50694 * 109.47250 * 270.27346 * 4 3 2 6 6 H 1.07999 * 119.99904 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00013 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00477 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99795 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47229 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47069 * 120.00050 * 9 7 5 12 12 H 1.48503 * 109.47259 * 239.99542 * 9 7 5 13 13 C 1.38545 * 120.00162 * 89.99542 * 3 2 1 14 14 N 1.28226 * 124.89921 * 359.45156 * 13 3 2 15 15 N 1.38857 * 116.64871 * 179.79153 * 14 13 3 16 16 C 1.38325 * 139.62884 * 180.12255 * 15 14 13 17 17 C 1.35725 * 107.03782 * 180.35152 * 16 15 14 18 18 C 1.48333 * 126.01385 * 180.02562 * 17 16 15 19 19 C 1.39380 * 120.12166 * 359.72499 * 18 17 16 20 20 C 1.38009 * 119.86834 * 179.74721 * 19 18 17 21 21 C 1.38329 * 120.12750 * 0.52952 * 20 19 18 22 22 C 1.38333 * 120.24916 * 359.74402 * 21 20 19 23 23 C 1.38004 * 120.12714 * 359.97438 * 22 21 20 24 24 N 1.34542 * 107.97155 * 359.97438 * 17 16 15 25 25 C 1.32275 * 109.01094 * 0.02925 * 24 17 16 26 26 S 1.75744 * 124.90104 * 179.75399 * 13 3 2 27 27 H 1.09003 * 109.47256 * 300.00119 * 1 2 3 28 28 H 1.09001 * 109.46864 * 60.00500 * 1 2 3 29 29 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47116 * 239.99346 * 2 1 3 31 31 H 1.09008 * 109.46576 * 119.99762 * 2 1 3 32 32 H 1.09003 * 109.47296 * 30.27471 * 4 3 2 33 33 H 1.08997 * 109.47026 * 150.27024 * 4 3 2 34 34 H 0.96998 * 120.00607 * 180.02562 * 8 7 5 35 35 H 1.07998 * 126.48355 * 0.37122 * 16 15 14 36 36 H 1.07997 * 120.06476 * 0.02562 * 19 18 17 37 37 H 1.08003 * 119.93217 * 180.29757 * 20 19 18 38 38 H 1.07997 * 119.87594 * 179.72319 * 21 20 19 39 39 H 1.08001 * 119.93488 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.06343 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2684 2.0697 -1.2687 5 6 3.6916 1.8266 -1.7003 6 1 4.3445 1.2195 -1.0907 7 6 4.1602 2.3791 -2.8734 8 7 3.3651 3.1179 -3.6160 9 14 5.9242 2.0771 -3.4086 10 1 6.6057 1.2191 -2.4064 11 1 5.9314 1.3978 -4.7292 12 1 6.6381 3.3749 -3.5158 13 6 2.2493 2.0343 1.1998 14 7 2.0584 1.5250 2.3610 15 7 2.3509 2.3333 3.4514 16 6 2.3308 2.2862 4.8337 17 6 2.7619 3.4936 5.2791 18 6 2.9043 3.8995 6.6987 19 6 2.5768 3.0066 7.7177 20 6 2.7163 3.3879 9.0367 21 6 3.1697 4.6571 9.3484 22 6 3.4908 5.5492 8.3411 23 6 3.3607 5.1769 7.0186 24 7 3.0383 4.2572 4.2065 25 6 2.7920 3.5626 3.1081 26 16 2.8389 3.6831 1.3499 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.5877 1.6878 -2.0297 33 1 2.1055 3.1396 -1.1397 34 1 3.6946 3.5063 -4.4414 35 1 2.0294 1.4471 5.4433 36 1 2.2189 2.0169 7.4755 37 1 2.4675 2.6952 9.8271 38 1 3.2731 4.9527 10.3819 39 1 3.8439 6.5390 8.5902 40 1 3.6121 5.8742 6.2330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756968906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:35 Heat of formation + Delta-G solvation = 140.621476 kcal Electronic energy + Delta-G solvation = -23971.091806 eV Core-core repulsion = 20493.141845 eV Total energy + Delta-G solvation = -3477.949961 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.41928 -40.04819 -39.47022 -37.28530 -34.92827 -32.97342 -32.35090 -31.95735 -31.53975 -29.58366 -28.40717 -25.60424 -25.14678 -24.38527 -23.75669 -22.72626 -21.49437 -20.77472 -20.12948 -18.74765 -17.99087 -17.44996 -17.37932 -17.12148 -16.50247 -16.14796 -15.88033 -15.70554 -15.31542 -15.00019 -14.65417 -14.37499 -14.26953 -14.19909 -13.86609 -13.67366 -13.31611 -13.20249 -13.10526 -12.78922 -12.67557 -12.29211 -12.15680 -11.99754 -11.97318 -11.92196 -11.65021 -11.58917 -11.09934 -11.04587 -10.69110 -9.79628 -9.63101 -9.22437 -8.77087 -8.26444 -6.44059 -0.59081 -0.07137 0.26065 0.36450 0.56230 0.62495 0.98797 1.38341 1.43082 1.52327 1.86404 2.20324 2.39283 3.02745 3.06918 3.09190 3.47298 3.97171 4.04650 4.15587 4.20357 4.27163 4.30900 4.38879 4.52852 4.62508 4.65192 4.75472 4.81766 4.91763 4.94908 4.98100 5.00765 5.21843 5.26867 5.29355 5.54209 5.62958 5.66237 5.68694 5.79183 5.88101 6.03550 6.13453 6.41320 6.60683 6.70578 7.28031 8.77319 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.002859 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.095556 B = 9790.059268 C =10751.042876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.118 3.882 3 N -0.540 5.540 4 C 0.260 3.740 5 C -0.552 4.552 6 H 0.057 0.943 7 C 0.028 3.972 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.359 3.641 14 N -0.367 5.367 15 N -0.286 5.286 16 C 0.005 3.995 17 C 0.052 3.948 18 C -0.021 4.021 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.115 4.115 24 N -0.460 5.460 25 C 0.070 3.930 26 S 0.168 5.832 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.271 0.729 35 H 0.220 0.780 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -2.574 19.398 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.005 4.005 3 N -0.256 5.256 4 C 0.140 3.860 5 C -0.591 4.591 6 H 0.075 0.925 7 C -0.174 4.174 8 N -0.554 5.554 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.199 1.199 12 H -0.205 1.205 13 C -0.026 4.026 14 N -0.202 5.202 15 N -0.057 5.057 16 C -0.133 4.133 17 C -0.081 4.081 18 C -0.022 4.022 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.134 4.134 24 N -0.185 5.185 25 C -0.299 4.299 26 S 0.402 5.598 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.236 0.764 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.622 -1.707 18.510 18.938 hybrid contribution 0.568 -0.832 -0.500 1.125 sum -3.053 -2.538 18.010 18.442 Atomic orbital electron populations 1.22077 0.94227 1.03552 1.01552 1.21751 0.95428 0.79538 1.03783 1.46967 1.64587 1.14263 0.99817 1.19364 0.96684 0.91843 0.78134 1.21628 0.97214 1.32969 1.07240 0.92508 1.25588 1.01492 0.94223 0.96087 1.69983 1.37412 1.33312 1.14698 0.85541 0.79930 0.78138 0.78341 1.19560 1.19894 1.20533 1.24425 0.93654 0.94024 0.90502 1.74124 1.37454 1.17191 0.91395 1.47422 1.44105 1.08287 1.05897 1.23008 1.10731 1.02368 0.77193 1.19509 1.05249 0.90456 0.92876 1.17886 1.01835 0.95405 0.87081 1.21363 0.99744 0.99577 0.92301 1.21419 0.98965 0.97175 0.95932 1.21615 0.97974 0.93654 1.00376 1.21357 1.00108 1.01032 0.91724 1.21281 0.99157 0.95426 0.97544 1.70453 1.22308 1.30796 0.94946 1.26829 1.12593 0.89052 1.01420 1.86021 1.75399 1.10042 0.88311 0.93693 0.92630 0.88700 0.88813 0.90260 0.93129 0.95841 0.92004 0.76384 0.83943 0.82679 0.83074 0.84023 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.31 16 2 C 0.12 3.69 6.24 86.38 0.54 4.23 16 3 N -0.54 -20.98 2.56 -711.68 -1.82 -22.80 16 4 C 0.26 11.70 5.15 85.63 0.44 12.14 16 5 C -0.55 -27.46 9.39 25.60 0.24 -27.22 16 6 H 0.06 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.03 1.40 5.46 84.65 0.46 1.86 16 8 N -0.92 -48.76 13.29 21.45 0.28 -48.48 16 9 Si 0.96 40.93 29.54 68.60 2.03 42.96 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 13 C 0.36 14.34 7.92 179.75 1.42 15.77 16 14 N -0.37 -14.21 11.22 -57.47 -0.64 -14.85 16 15 N -0.29 -10.89 4.38 -192.61 -0.84 -11.73 16 16 C 0.00 0.15 11.42 83.09 0.95 1.10 16 17 C 0.05 1.74 6.84 40.83 0.28 2.02 16 18 C -0.02 -0.55 5.88 -20.04 -0.12 -0.67 16 19 C -0.11 -2.17 9.56 22.49 0.22 -1.95 16 20 C -0.12 -1.76 10.03 22.24 0.22 -1.53 16 21 C -0.12 -1.77 10.04 22.31 0.22 -1.54 16 22 C -0.12 -2.35 10.03 22.24 0.22 -2.13 16 23 C -0.12 -2.97 9.70 22.49 0.22 -2.75 16 24 N -0.46 -18.19 11.00 -185.80 -2.04 -20.23 16 25 C 0.07 2.85 8.98 179.74 1.61 4.46 16 26 S 0.17 6.84 21.90 -56.49 -1.24 5.60 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 2.84 8.07 -2.39 -0.02 2.82 16 31 H 0.08 2.40 7.62 -2.38 -0.02 2.38 16 32 H 0.05 2.32 8.07 -2.39 -0.02 2.30 16 33 H 0.02 1.14 7.06 -2.39 -0.02 1.12 16 34 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.22 4.78 7.27 -2.91 -0.02 4.76 16 36 H 0.14 2.12 7.00 -2.91 -0.02 2.10 16 37 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 40 H 0.11 3.21 7.86 -2.91 -0.02 3.19 16 Total: -1.00 -62.63 359.75 4.45 -58.17 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.06 Total: 10.90 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 7.67 Total: 0.46 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -5.07 Total: -118.09 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 6.84 SS G_CDS: -1.24 Total: 5.60 kcal Total: -62.63 4.45 -58.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756968906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.794 kcal (2) G-P(sol) polarization free energy of solvation -62.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds