Wall clock time and date at job start Tue Mar 31 2020 16:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20757 * 119.99915 * 2 1 4 4 C 1.50703 * 120.00105 * 179.97438 * 2 1 3 5 5 O 1.45198 * 109.46862 * 180.02562 * 4 2 1 6 6 C 1.34813 * 116.99856 * 179.97438 * 5 4 2 7 7 O 1.21557 * 119.99411 * 0.27536 * 6 5 4 8 8 C 1.47016 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.41142 * 126.49669 * 0.02655 * 8 6 5 10 10 N 1.30442 * 108.29657 * 179.97438 * 9 8 6 11 11 N 1.39907 * 109.23634 * 0.02562 * 10 9 8 12 12 C 1.46501 * 125.79307 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47292 * 89.97436 * 12 11 10 14 14 H 1.07997 * 119.99829 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99856 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00429 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47042 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47257 * 119.99837 * 17 15 13 20 20 H 1.48500 * 109.46764 * 239.99747 * 17 15 13 21 21 C 1.35152 * 108.41083 * 359.75955 * 11 10 9 22 22 C 1.47727 * 126.47851 * 180.23090 * 21 11 10 23 23 C 1.39621 * 120.14516 * 314.91952 * 22 21 11 24 24 C 1.37950 * 119.84105 * 179.72329 * 23 22 21 25 25 C 1.38363 * 120.15217 * 0.52797 * 24 23 22 26 26 C 1.38369 * 120.30099 * 359.77078 * 25 24 23 27 27 C 1.37945 * 120.15160 * 359.95066 * 26 25 24 28 28 H 1.09003 * 109.47033 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47742 * 300.00094 * 1 2 3 30 30 H 1.08997 * 109.46984 * 60.00607 * 1 2 3 31 31 H 1.08994 * 109.47313 * 60.00301 * 4 2 1 32 32 H 1.09006 * 109.46774 * 299.99945 * 4 2 1 33 33 H 1.08004 * 125.85287 * 359.94867 * 9 8 6 34 34 H 1.09000 * 109.46848 * 209.96952 * 12 11 10 35 35 H 1.08993 * 109.47383 * 329.97081 * 12 11 10 36 36 H 0.97002 * 120.00581 * 180.02562 * 16 15 13 37 37 H 1.07995 * 120.08109 * 359.97438 * 23 22 21 38 38 H 1.07997 * 119.92511 * 180.27590 * 24 23 22 39 39 H 1.07998 * 119.84905 * 179.74269 * 25 24 23 40 40 H 1.07995 * 119.92575 * 179.97438 * 26 25 24 41 41 H 1.07996 * 120.07646 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 8 3.6880 -1.0397 0.0011 6 6 4.5093 -2.1088 0.0022 7 8 4.0446 -3.2320 -0.0024 8 6 5.9668 -1.9161 0.0022 9 6 6.6503 -0.6812 0.0016 10 7 7.9321 -0.9226 0.0023 11 7 8.1406 -2.3061 0.0028 12 6 9.4433 -2.9763 0.0042 13 6 9.8890 -3.2053 1.4255 14 1 9.2645 -2.8834 2.2457 15 6 11.0944 -3.8248 1.6786 16 7 11.8551 -4.2163 0.6799 17 14 11.6464 -4.1093 3.4404 18 1 10.6185 -3.5808 4.3727 19 1 11.8258 -5.5647 3.6741 20 1 12.9342 -3.4079 3.6750 21 6 6.9362 -2.9192 0.0077 22 6 6.6924 -4.3762 0.0147 23 6 7.4160 -5.2123 -0.8379 24 6 7.1873 -6.5726 -0.8221 25 6 6.2358 -7.1076 0.0281 26 6 5.5108 -6.2840 0.8710 27 6 5.7333 -4.9226 0.8697 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9973 -1.8771 -0.8891 32 1 1.9971 -1.8763 0.8909 33 1 6.1907 0.2962 0.0003 34 1 9.3596 -3.9342 -0.5091 35 1 10.1739 -2.3515 -0.5095 36 1 12.7030 -4.6525 0.8580 37 1 8.1559 -4.7955 -1.5051 38 1 7.7495 -7.2211 -1.4778 39 1 6.0579 -8.1728 0.0334 40 1 4.7693 -6.7080 1.5319 41 1 5.1671 -4.2810 1.5284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759079131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:31 Heat of formation + Delta-G solvation = -20.121649 kcal Electronic energy + Delta-G solvation = -27252.218662 eV Core-core repulsion = 23292.252735 eV Total energy + Delta-G solvation = -3959.965928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.01587 -40.07362 -39.01884 -38.41236 -36.01960 -33.94913 -32.25316 -31.64207 -31.33574 -30.50833 -28.92151 -27.90551 -27.15325 -24.03565 -22.87061 -22.23541 -22.02159 -20.23809 -20.17881 -19.20083 -17.59829 -17.09413 -16.79106 -16.62562 -16.26224 -15.76187 -15.34822 -15.11613 -14.81292 -14.72409 -14.61409 -14.04136 -13.76919 -13.47714 -13.23424 -13.04807 -12.84424 -12.75314 -12.51659 -12.37553 -12.36792 -12.17614 -11.75097 -11.14930 -11.11165 -10.98491 -10.80510 -10.59603 -10.50545 -10.38534 -10.02760 -9.95068 -9.80656 -9.21498 -8.72449 -8.48706 -8.28216 -7.94523 -6.35014 -4.41983 1.21271 1.62777 1.83007 2.08207 2.52391 2.67049 3.16934 3.22534 3.25014 3.33243 3.58726 3.86009 4.23321 4.23712 4.61481 4.80883 4.82765 4.95417 4.99639 5.01751 5.09212 5.15749 5.25325 5.27874 5.38428 5.44005 5.51544 5.69043 5.82119 5.86543 6.05797 6.24754 6.37682 6.54522 6.60594 6.78396 6.81792 6.86042 6.89713 7.06598 7.18646 7.29478 7.47866 7.66649 7.73958 8.07316 8.26397 8.61924 9.24510 10.73470 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003641 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.358810 B = 7688.908011 C = 8923.103043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.352 3.648 3 O -0.434 6.434 4 C 0.016 3.984 5 O -0.340 6.340 6 C 0.548 3.452 7 O -0.519 6.519 8 C -0.304 4.304 9 C 0.084 3.916 10 N -0.290 5.290 11 N -0.301 5.301 12 C 0.244 3.756 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.889 5.889 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.207 3.793 22 C -0.035 4.035 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.109 4.109 26 C -0.131 4.131 27 C -0.044 4.044 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.189 0.811 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.269 0.731 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.387 -0.742 -2.605 19.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.226 3.774 3 O -0.305 6.305 4 C -0.060 4.060 5 O -0.257 6.257 6 C 0.395 3.605 7 O -0.409 6.409 8 C -0.318 4.318 9 C -0.103 4.103 10 N -0.110 5.110 11 N -0.076 5.076 12 C 0.128 3.872 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.205 1.205 21 C 0.069 3.931 22 C -0.037 4.037 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.063 4.063 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.206 0.794 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.655 -0.064 -2.666 17.855 hybrid contribution -0.483 -0.673 0.923 1.240 sum -18.138 -0.737 -1.743 18.236 Atomic orbital electron populations 1.22162 0.92649 1.05083 1.05336 1.24557 0.91949 0.89292 0.71645 1.90472 1.71667 1.34559 1.33831 1.23417 0.79477 0.98034 1.05022 1.86662 1.16598 1.37133 1.85270 1.20041 0.86461 0.81928 0.72076 1.90834 1.77416 1.24381 1.48280 1.18901 0.89178 0.93299 1.30374 1.23935 0.90425 0.98274 0.97625 1.77225 1.17336 0.92807 1.23592 1.49734 1.07100 1.03428 1.47311 1.20127 0.74401 0.92714 1.00005 1.21235 1.05199 1.40407 0.90751 0.91594 1.24884 0.95677 0.94590 0.98310 1.69908 1.12398 1.39238 1.31061 0.86278 0.78757 0.78102 0.83491 1.19493 1.20512 1.20520 1.19717 0.85865 0.91959 0.95554 1.17861 0.98761 0.88103 0.98981 1.21254 0.97448 0.93618 0.97863 1.20932 0.98803 0.94644 1.00100 1.21170 0.96110 0.99406 0.96036 1.20927 1.00588 0.93295 1.00138 1.21032 0.94280 0.94753 0.96273 0.89673 0.88464 0.88471 0.87920 0.87920 0.79398 0.91839 0.92156 0.92146 0.85749 0.85949 0.86369 0.86182 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.94 10.33 36.00 0.37 -0.57 16 2 C 0.35 3.34 7.34 -29.04 -0.21 3.12 16 3 O -0.43 -6.07 17.24 -13.71 -0.24 -6.31 16 4 C 0.02 0.16 5.81 36.01 0.21 0.37 16 5 O -0.34 -5.09 9.60 -47.50 -0.46 -5.55 16 6 C 0.55 9.35 7.83 34.29 0.27 9.61 16 7 O -0.52 -9.05 12.76 -19.31 -0.25 -9.30 16 8 C -0.30 -5.83 6.12 -104.77 -0.64 -6.47 16 9 C 0.08 1.57 11.84 -17.04 -0.20 1.37 16 10 N -0.29 -6.36 12.48 30.83 0.38 -5.98 16 11 N -0.30 -6.87 3.59 -58.18 -0.21 -7.07 16 12 C 0.24 6.06 5.95 -5.19 -0.03 6.03 16 13 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 14 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -24.41 13.29 55.43 0.74 -23.67 16 17 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.21 4.32 6.51 -82.06 -0.53 3.78 16 22 C -0.04 -0.69 5.25 -104.99 -0.55 -1.24 16 23 C -0.08 -1.52 8.52 -39.17 -0.33 -1.85 16 24 C -0.13 -1.99 10.03 -39.64 -0.40 -2.38 16 25 C -0.11 -1.56 10.04 -39.49 -0.40 -1.96 16 26 C -0.13 -1.99 10.03 -39.64 -0.40 -2.38 16 27 C -0.04 -0.78 7.55 -39.17 -0.30 -1.08 16 28 H 0.08 0.23 8.00 -51.93 -0.42 -0.19 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.19 2.89 8.06 -52.48 -0.42 2.47 16 34 H 0.06 1.55 5.08 -51.93 -0.26 1.29 16 35 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.12 2.27 6.54 -52.49 -0.34 1.93 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.12 2.16 6.78 -52.49 -0.36 1.81 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -32.59 363.26 -7.87 -40.46 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.73 Total: 2.76 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -3.56 Total: -6.76 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.91 Total: -36.73 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.94 Total: -21.15 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.59 -7.87 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759079131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.336 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds