Wall clock time and date at job start Tue Mar 31 2020 16:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20757 * 119.99915 * 2 1 4 4 C 1.50703 * 120.00105 * 179.97438 * 2 1 3 5 5 O 1.45198 * 109.46862 * 180.02562 * 4 2 1 6 6 C 1.34813 * 116.99856 * 179.97438 * 5 4 2 7 7 O 1.21557 * 119.99411 * 0.27536 * 6 5 4 8 8 C 1.47016 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.41142 * 126.49669 * 0.02655 * 8 6 5 10 10 N 1.30442 * 108.29657 * 179.97438 * 9 8 6 11 11 N 1.39907 * 109.23634 * 0.02562 * 10 9 8 12 12 C 1.46501 * 125.79307 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47292 * 89.97436 * 12 11 10 14 14 H 1.07997 * 119.99829 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99856 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00429 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47042 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47257 * 119.99837 * 17 15 13 20 20 H 1.48500 * 109.46764 * 239.99747 * 17 15 13 21 21 C 1.35152 * 108.41083 * 359.75955 * 11 10 9 22 22 C 1.47727 * 126.47851 * 180.23090 * 21 11 10 23 23 C 1.39621 * 120.14516 * 314.91952 * 22 21 11 24 24 C 1.37950 * 119.84105 * 179.72329 * 23 22 21 25 25 C 1.38363 * 120.15217 * 0.52797 * 24 23 22 26 26 C 1.38369 * 120.30099 * 359.77078 * 25 24 23 27 27 C 1.37945 * 120.15160 * 359.95066 * 26 25 24 28 28 H 1.09003 * 109.47033 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47742 * 300.00094 * 1 2 3 30 30 H 1.08997 * 109.46984 * 60.00607 * 1 2 3 31 31 H 1.08994 * 109.47313 * 60.00301 * 4 2 1 32 32 H 1.09006 * 109.46774 * 299.99945 * 4 2 1 33 33 H 1.08004 * 125.85287 * 359.94867 * 9 8 6 34 34 H 1.09000 * 109.46848 * 209.96952 * 12 11 10 35 35 H 1.08993 * 109.47383 * 329.97081 * 12 11 10 36 36 H 0.97002 * 120.00581 * 180.02562 * 16 15 13 37 37 H 1.07995 * 120.08109 * 359.97438 * 23 22 21 38 38 H 1.07997 * 119.92511 * 180.27590 * 24 23 22 39 39 H 1.07998 * 119.84905 * 179.74269 * 25 24 23 40 40 H 1.07995 * 119.92575 * 179.97438 * 26 25 24 41 41 H 1.07996 * 120.07646 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 8 3.6880 -1.0397 0.0011 6 6 4.5093 -2.1088 0.0022 7 8 4.0446 -3.2320 -0.0024 8 6 5.9668 -1.9161 0.0022 9 6 6.6503 -0.6812 0.0016 10 7 7.9321 -0.9226 0.0023 11 7 8.1406 -2.3061 0.0028 12 6 9.4433 -2.9763 0.0042 13 6 9.8890 -3.2053 1.4255 14 1 9.2645 -2.8834 2.2457 15 6 11.0944 -3.8248 1.6786 16 7 11.8551 -4.2163 0.6799 17 14 11.6464 -4.1093 3.4404 18 1 10.6185 -3.5808 4.3727 19 1 11.8258 -5.5647 3.6741 20 1 12.9342 -3.4079 3.6750 21 6 6.9362 -2.9192 0.0077 22 6 6.6924 -4.3762 0.0147 23 6 7.4160 -5.2123 -0.8379 24 6 7.1873 -6.5726 -0.8221 25 6 6.2358 -7.1076 0.0281 26 6 5.5108 -6.2840 0.8710 27 6 5.7333 -4.9226 0.8697 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9973 -1.8771 -0.8891 32 1 1.9971 -1.8763 0.8909 33 1 6.1907 0.2962 0.0003 34 1 9.3596 -3.9342 -0.5091 35 1 10.1739 -2.3515 -0.5095 36 1 12.7030 -4.6525 0.8580 37 1 8.1559 -4.7955 -1.5051 38 1 7.7495 -7.2211 -1.4778 39 1 6.0579 -8.1728 0.0334 40 1 4.7693 -6.7080 1.5319 41 1 5.1671 -4.2810 1.5284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759079131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:30 Heat of formation + Delta-G solvation = -37.896312 kcal Electronic energy + Delta-G solvation = -27252.989430 eV Core-core repulsion = 23292.252735 eV Total energy + Delta-G solvation = -3960.736695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.52958 -41.20931 -40.05558 -39.69994 -37.24216 -35.86596 -33.94006 -33.10505 -32.12521 -31.78431 -30.24394 -29.43564 -28.35257 -25.76322 -24.40115 -23.60793 -23.32981 -21.70776 -21.00625 -20.61926 -19.11320 -18.75416 -18.25998 -17.67891 -17.43361 -17.09677 -16.61788 -16.35419 -16.28360 -15.83186 -15.74456 -15.54298 -15.18600 -15.02908 -14.55300 -14.36806 -14.13089 -13.89422 -13.69713 -13.61625 -13.51350 -13.10225 -13.06560 -12.98819 -12.76436 -12.44801 -12.34656 -12.03282 -11.96001 -11.85856 -11.71782 -11.37089 -10.79313 -10.75207 -10.73212 -9.91505 -9.77558 -9.36407 -8.40180 -6.55462 -0.18806 0.54855 0.71384 0.89392 1.10103 1.32087 1.33945 1.35958 1.48492 1.77133 2.16092 2.30363 2.91942 2.93543 3.05467 3.36491 3.65939 3.89561 3.99619 4.06142 4.09777 4.14892 4.23213 4.26287 4.27324 4.49843 4.57764 4.67818 4.69410 4.73943 4.79024 4.86723 4.97224 5.13716 5.15741 5.29077 5.42876 5.47399 5.53991 5.56668 5.59553 5.70846 5.87405 6.07986 6.46002 6.49648 6.62482 6.83391 7.14618 8.68388 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003641 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.358810 B = 7688.908011 C = 8923.103043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.360 3.640 3 O -0.488 6.488 4 C 0.001 3.999 5 O -0.350 6.350 6 C 0.555 3.445 7 O -0.522 6.522 8 C -0.311 4.311 9 C 0.096 3.904 10 N -0.327 5.327 11 N -0.326 5.326 12 C 0.261 3.739 13 C -0.555 4.555 14 H 0.048 0.952 15 C 0.028 3.972 16 N -0.913 5.913 17 Si 0.969 3.031 18 H -0.275 1.275 19 H -0.266 1.266 20 H -0.272 1.272 21 C 0.199 3.801 22 C -0.066 4.066 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.098 4.098 26 C -0.128 4.128 27 C -0.058 4.058 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.220 0.780 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.275 0.725 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.962 -2.654 -1.697 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.237 3.763 3 O -0.364 6.364 4 C -0.072 4.072 5 O -0.267 6.267 6 C 0.402 3.598 7 O -0.413 6.413 8 C -0.325 4.325 9 C -0.090 4.090 10 N -0.147 5.147 11 N -0.101 5.101 12 C 0.143 3.857 13 C -0.593 4.593 14 H 0.066 0.934 15 C -0.174 4.174 16 N -0.551 5.551 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.191 1.191 20 H -0.197 1.197 21 C 0.063 3.937 22 C -0.068 4.068 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.116 4.116 26 C -0.145 4.145 27 C -0.077 4.077 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.237 0.763 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.172 0.828 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.268 -1.984 -1.770 20.441 hybrid contribution 0.143 -0.108 0.595 0.621 sum -20.124 -2.092 -1.175 20.267 Atomic orbital electron populations 1.22197 0.88359 1.07343 1.06281 1.25204 0.93916 0.87870 0.69277 1.90471 1.73041 1.36037 1.36812 1.23983 0.76706 0.99543 1.07006 1.86630 1.19041 1.36250 1.84737 1.19607 0.85854 0.82281 0.72039 1.90814 1.77436 1.24635 1.48391 1.19211 0.90664 0.92909 1.29670 1.24444 0.89477 0.99544 0.95560 1.77147 1.19157 0.92777 1.25597 1.49468 1.07017 1.03865 1.49732 1.19662 0.75166 0.92197 0.98678 1.21338 1.05624 1.41070 0.91240 0.93402 1.25657 0.95458 0.94032 1.02215 1.69982 1.12784 1.39442 1.32855 0.85345 0.78210 0.78601 0.78607 1.19934 1.19101 1.19674 1.20222 0.85429 0.93348 0.94693 1.18065 1.00478 0.87501 1.00736 1.21309 0.97789 0.95082 0.98312 1.21295 0.99220 0.93637 1.00612 1.21651 0.94337 1.01415 0.94191 1.21358 1.00819 0.92123 1.00228 1.21140 0.94156 0.96192 0.96195 0.86836 0.87354 0.87342 0.85945 0.85837 0.76329 0.91957 0.94817 0.91580 0.87319 0.83573 0.82182 0.82763 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 10.33 71.23 0.74 -0.45 16 2 C 0.36 6.22 7.34 29.10 0.21 6.43 16 3 O -0.49 -13.49 17.24 17.41 0.30 -13.19 16 4 C 0.00 0.03 5.81 71.24 0.41 0.44 16 5 O -0.35 -10.23 9.60 -50.84 -0.49 -10.72 16 6 C 0.56 18.81 7.83 70.12 0.55 19.36 16 7 O -0.52 -17.76 12.76 19.65 0.25 -17.51 16 8 C -0.31 -12.24 6.12 -19.96 -0.12 -12.37 16 9 C 0.10 3.71 11.84 85.61 1.01 4.72 16 10 N -0.33 -15.11 12.48 -56.37 -0.70 -15.81 16 11 N -0.33 -15.76 3.59 -337.99 -1.21 -16.97 16 12 C 0.26 13.79 5.95 85.63 0.51 14.30 16 13 C -0.55 -31.31 9.39 25.60 0.24 -31.07 16 14 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 15 C 0.03 1.54 5.46 84.65 0.46 2.00 16 16 N -0.91 -51.09 13.29 21.44 0.28 -50.81 16 17 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 21 C 0.20 8.70 6.51 41.45 0.27 8.97 16 22 C -0.07 -2.63 5.25 -20.10 -0.11 -2.74 16 23 C -0.11 -3.98 8.52 22.54 0.19 -3.78 16 24 C -0.13 -3.88 10.03 22.23 0.22 -3.66 16 25 C -0.10 -2.49 10.04 22.33 0.22 -2.26 16 26 C -0.13 -3.50 10.03 22.23 0.22 -3.28 16 27 C -0.06 -2.01 7.55 22.53 0.17 -1.84 16 28 H 0.11 0.11 8.00 -2.39 -0.02 0.09 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.22 6.75 8.06 -2.91 -0.02 6.73 16 34 H 0.06 3.26 5.08 -2.39 -0.01 3.25 16 35 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.11 4.27 6.54 -2.91 -0.02 4.25 16 38 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.12 4.13 6.78 -2.91 -0.02 4.11 16 Total: -1.00 -74.28 363.26 6.74 -67.54 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.07 Total: 17.42 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.21 Total: -5.24 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -1.63 Total: -83.60 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: 0.06 Total: -41.42 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -74.28 6.74 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759079131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.643 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds