Wall clock time and date at job start Tue Mar 31 2020 16:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00061 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47023 * 90.00536 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00292 * 8 6 4 11 11 H 1.48500 * 109.47388 * 329.99951 * 8 6 4 12 12 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 13 13 C 1.34719 * 116.99905 * 90.00262 * 12 2 1 14 14 O 1.21461 * 120.00125 * 359.97438 * 13 12 2 15 15 C 1.47786 * 119.99855 * 179.97438 * 13 12 2 16 16 C 1.39477 * 120.02917 * 179.72445 * 15 13 12 17 17 N 1.32043 * 119.95781 * 179.70970 * 16 15 13 18 18 C 1.32619 * 120.00701 * 0.56762 * 17 16 15 19 19 O 1.35475 * 119.97334 * 179.68710 * 18 17 16 20 20 C 1.42907 * 116.99725 * 0.02562 * 19 18 17 21 21 C 1.50695 * 109.47090 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00082 * 269.72614 * 21 20 19 23 23 C 1.38233 * 119.99972 * 179.76327 * 22 21 20 24 24 C 1.38238 * 119.99835 * 0.51177 * 23 22 21 25 25 C 1.38229 * 120.00208 * 359.74097 * 24 23 22 26 26 C 1.38237 * 119.99917 * 0.02562 * 25 24 23 27 27 C 1.39618 * 120.05981 * 359.71234 * 18 17 16 28 28 N 1.31542 * 120.04522 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 0.97005 * 119.99945 * 180.02562 * 7 6 4 33 33 H 1.08002 * 120.02297 * 359.97438 * 16 15 13 34 34 H 1.08996 * 109.47120 * 299.99875 * 20 19 18 35 35 H 1.08999 * 109.47128 * 59.99823 * 20 19 18 36 36 H 1.07997 * 119.99955 * 0.02562 * 22 21 20 37 37 H 1.07999 * 120.00324 * 180.22933 * 23 22 21 38 38 H 1.08002 * 119.99741 * 179.71926 * 24 23 22 39 39 H 1.08005 * 120.00199 * 179.97438 * 25 24 23 40 40 H 1.07999 * 120.00196 * 179.97438 * 26 25 24 41 41 H 1.08001 * 119.98038 * 179.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 8 2.0140 -0.6845 -1.1855 13 6 2.2179 0.0667 -2.2851 14 8 1.9970 1.2607 -2.2544 15 6 2.7104 -0.5620 -3.5286 16 6 2.9162 0.2142 -4.6690 17 7 3.3617 -0.3480 -5.7776 18 6 3.6025 -1.6518 -5.8097 19 8 4.0535 -2.2289 -6.9493 20 6 4.2476 -1.3730 -8.0771 21 6 4.7490 -2.1849 -9.2435 22 6 6.1075 -2.3527 -9.4357 23 6 6.5673 -3.1015 -10.5029 24 6 5.6687 -3.6737 -11.3838 25 6 4.3103 -3.5016 -11.1946 26 6 3.8504 -2.7568 -10.1247 27 6 3.3910 -2.4302 -4.6701 28 7 2.9531 -1.8714 -3.5627 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9033 -0.5279 4.4376 33 1 2.7154 1.2751 -4.6441 34 1 3.3015 -0.9012 -8.3423 35 1 4.9796 -0.6046 -7.8284 36 1 6.8097 -1.9023 -8.7498 37 1 7.6286 -3.2357 -10.6510 38 1 6.0280 -4.2550 -12.2201 39 1 3.6082 -3.9483 -11.8831 40 1 2.7891 -2.6219 -9.9770 41 1 3.5871 -3.4919 -4.6978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759508826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:54 Heat of formation + Delta-G solvation = -56.854103 kcal Electronic energy + Delta-G solvation = -25743.732270 eV Core-core repulsion = 21782.173504 eV Total energy + Delta-G solvation = -3961.558766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.69310 -41.28143 -40.41928 -39.27426 -37.77281 -35.59658 -35.19120 -33.54343 -32.76012 -31.89426 -31.84012 -28.03874 -27.36449 -26.36864 -25.73582 -23.84183 -23.53744 -22.37697 -21.91947 -19.90433 -19.74351 -19.21106 -18.31621 -18.11694 -17.68359 -17.62405 -17.08754 -16.70961 -16.25212 -16.06578 -15.96524 -15.59679 -15.14479 -14.89178 -14.74358 -14.45957 -14.30365 -14.26724 -13.88401 -13.71839 -13.49261 -13.40219 -12.93908 -12.84796 -12.76461 -12.28553 -12.23159 -12.02096 -12.01509 -11.88215 -11.70185 -11.56875 -11.25159 -10.82815 -10.60663 -10.05971 -9.86287 -9.83410 -8.42984 -6.52567 -0.88116 -0.22574 0.17457 0.46212 1.24109 1.26481 1.33265 1.43174 1.50347 1.76656 2.21488 2.45589 2.68268 2.86221 2.89200 2.94358 3.17550 3.61931 3.67870 3.81263 3.93482 4.09927 4.21929 4.23611 4.26516 4.32433 4.37964 4.40570 4.50805 4.58865 4.70103 4.70210 4.77070 5.00358 5.11437 5.17280 5.32253 5.48812 5.50408 5.56971 5.58452 5.71943 5.80293 6.04259 6.08912 6.33868 6.51363 6.75761 7.11291 8.73094 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.039241 B = 0.001921 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.376532 B =14573.417097 C =14826.018715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.039 0.961 4 C -0.541 4.541 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.930 5.930 8 Si 0.943 3.057 9 H -0.250 1.250 10 H -0.283 1.283 11 H -0.252 1.252 12 O -0.334 6.334 13 C 0.519 3.481 14 O -0.524 6.524 15 C -0.023 4.023 16 C 0.178 3.822 17 N -0.501 5.501 18 C 0.314 3.686 19 O -0.282 6.282 20 C 0.106 3.894 21 C -0.115 4.115 22 C -0.107 4.107 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.131 4.131 26 C -0.106 4.106 27 C 0.054 3.946 28 N -0.379 5.379 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.275 0.725 33 H 0.206 0.794 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -2.819 -32.916 33.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.136 3.864 3 H 0.057 0.943 4 C -0.578 4.578 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.568 5.568 8 Si 0.768 3.232 9 H -0.176 1.176 10 H -0.209 1.209 11 H -0.177 1.177 12 O -0.248 6.248 13 C 0.363 3.637 14 O -0.415 6.415 15 C -0.158 4.158 16 C 0.020 3.980 17 N -0.230 5.230 18 C 0.129 3.871 19 O -0.186 6.186 20 C 0.032 3.968 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.131 4.131 25 C -0.149 4.149 26 C -0.124 4.124 27 C -0.116 4.116 28 N -0.096 5.096 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.223 0.777 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.825 -2.707 -32.712 33.177 hybrid contribution -0.285 0.676 0.747 1.047 sum 4.540 -2.031 -31.965 32.350 Atomic orbital electron populations 1.22420 0.95963 1.02668 1.01041 1.20780 0.92320 0.93292 0.80004 0.94343 1.20918 1.33426 1.14007 0.89462 0.93863 1.25613 0.96941 1.00076 0.94476 1.69970 1.46121 1.41959 0.98777 0.85940 0.79742 0.79361 0.78197 1.17558 1.20940 1.17656 1.86680 1.75465 1.42273 1.20431 1.20839 0.74173 0.84650 0.84072 1.90771 1.50040 1.15951 1.84723 1.20794 1.09184 0.91854 0.93968 1.23664 0.87548 1.02180 0.84561 1.68397 1.16686 1.10348 1.27618 1.21478 0.88078 0.89309 0.88259 1.86355 1.77456 1.37103 1.17652 1.21722 1.02715 0.91197 0.81152 1.19575 0.94371 1.01629 0.95988 1.21325 0.94764 0.98169 0.98203 1.21478 1.01171 0.97490 0.94768 1.21611 0.93373 0.98617 0.99508 1.21482 0.96560 0.98795 0.98026 1.21329 1.00068 0.96319 0.94646 1.23570 0.99701 1.03285 0.85009 1.68495 1.04324 1.10506 1.26224 0.91999 0.91379 0.92262 0.91517 0.77716 0.89543 0.89714 0.85087 0.83909 0.83672 0.83823 0.84944 0.76878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.29 9.03 71.98 0.65 -6.64 16 2 C 0.19 9.79 2.16 29.85 0.06 9.85 16 3 H 0.04 2.04 6.22 -2.39 -0.01 2.02 16 4 C -0.54 -32.42 9.48 25.60 0.24 -32.18 16 5 H 0.04 2.90 8.06 -2.91 -0.02 2.87 16 6 C 0.03 1.68 5.45 84.65 0.46 2.14 16 7 N -0.93 -57.53 13.96 21.45 0.30 -57.23 16 8 Si 0.94 44.06 24.37 68.60 1.67 45.73 16 9 H -0.25 -10.78 6.87 99.48 0.68 -10.09 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.25 -11.36 6.53 99.48 0.65 -10.71 16 12 O -0.33 -16.21 9.69 -56.29 -0.55 -16.75 16 13 C 0.52 21.36 7.92 70.35 0.56 21.91 16 14 O -0.52 -22.21 15.59 19.96 0.31 -21.89 16 15 C -0.02 -0.75 6.74 41.76 0.28 -0.47 16 16 C 0.18 4.53 10.76 84.96 0.91 5.44 16 17 N -0.50 -11.29 9.37 -307.02 -2.88 -14.17 16 18 C 0.31 6.71 7.50 84.91 0.64 7.35 16 19 O -0.28 -5.18 10.10 -87.74 -0.89 -6.07 16 20 C 0.11 1.59 5.44 71.23 0.39 1.98 16 21 C -0.12 -1.64 5.51 -19.87 -0.11 -1.75 16 22 C -0.11 -1.39 9.70 22.27 0.22 -1.17 16 23 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 24 C -0.11 -1.09 10.05 22.27 0.22 -0.87 16 25 C -0.13 -1.36 10.05 22.27 0.22 -1.14 16 26 C -0.11 -1.34 9.70 22.27 0.22 -1.12 16 27 C 0.05 1.24 11.18 85.07 0.95 2.19 16 28 N -0.38 -12.08 10.27 -183.97 -1.89 -13.96 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.06 2.59 3.27 -2.39 -0.01 2.59 16 32 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 33 H 0.21 4.40 7.64 -2.91 -0.02 4.38 16 34 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 35 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 36 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.21 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -73.00 358.80 3.21 -69.79 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.98 Total: 10.22 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 6.14 Total: 4.34 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -4.47 Total: -85.37 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.12 Total: -44.71 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.73 kcal Total: -73.00 3.21 -69.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759508826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.937 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds