Wall clock time and date at job start Tue Mar 31 2020 14:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38392 * 119.99848 * 2 1 4 4 N 1.32119 * 119.99827 * 179.97438 * 3 2 1 5 5 C 1.32155 * 120.00176 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00155 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47343 * 304.99959 * 6 5 4 8 8 O 1.45199 * 109.47261 * 179.97438 * 7 6 5 9 9 C 1.34755 * 116.99642 * 179.97438 * 8 7 6 10 10 O 1.21516 * 120.00613 * 0.02562 * 9 8 7 11 11 C 1.47406 * 119.99639 * 180.02562 * 9 8 7 12 12 C 1.39723 * 120.20222 * 0.27620 * 11 9 8 13 13 C 1.37804 * 119.91132 * 180.27304 * 12 11 9 14 14 C 1.38590 * 120.33478 * 359.70564 * 13 12 11 15 15 C 1.38027 * 120.40963 * 0.02562 * 14 13 12 16 16 C 1.38837 * 120.07780 * 0.02562 * 15 14 13 17 17 O 1.35504 * 120.16263 * 179.97438 * 16 15 14 18 18 C 1.34813 * 117.00336 * 5.59565 * 17 16 15 19 19 H 1.08003 * 119.99735 * 354.93370 * 18 17 16 20 20 C 1.38701 * 120.00240 * 174.93697 * 18 17 16 21 21 N 1.31521 * 119.99788 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00110 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47537 * 89.99762 * 22 20 18 24 24 H 1.48500 * 109.47284 * 209.99750 * 22 20 18 25 25 H 1.48501 * 109.47074 * 329.99867 * 22 20 18 26 26 C 1.38346 * 120.00082 * 0.25626 * 5 4 3 27 27 N 1.32119 * 120.00574 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47344 * 90.00377 * 1 2 3 29 29 H 1.09007 * 109.47155 * 210.00216 * 1 2 3 30 30 H 1.08999 * 109.47569 * 329.99586 * 1 2 3 31 31 H 1.08002 * 120.00362 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47169 * 184.99726 * 6 5 4 33 33 H 1.09004 * 109.47016 * 65.00382 * 6 5 4 34 34 H 1.09003 * 109.46552 * 60.00009 * 7 6 5 35 35 H 1.09001 * 109.46920 * 300.00297 * 7 6 5 36 36 H 1.07998 * 120.04994 * 0.02562 * 12 11 9 37 37 H 1.08006 * 119.83366 * 179.72174 * 13 12 11 38 38 H 1.07992 * 119.79673 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.95774 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99771 * 180.02562 * 21 20 18 41 41 H 1.07997 * 120.00155 * 179.72470 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5201 1.1985 0.0005 5 6 4.1809 0.0540 0.0015 6 6 5.6879 0.0540 0.0015 7 6 6.1979 0.8803 -1.1808 8 8 7.6499 0.8808 -1.1804 9 6 8.2617 1.5683 -2.1649 10 8 7.5999 2.1517 -3.0005 11 6 9.7337 1.6124 -2.2281 12 6 10.4988 0.9384 -1.2729 13 6 11.8746 0.9883 -1.3344 14 6 12.5047 1.6994 -2.3433 15 6 11.7622 2.3657 -3.2972 16 6 10.3751 2.3277 -3.2509 17 8 9.6445 2.9816 -4.1861 18 6 10.3216 3.5543 -5.2015 19 1 11.4016 3.5505 -5.2004 20 6 9.6312 4.1484 -6.2476 21 7 8.3160 4.1526 -6.2492 22 14 10.5694 4.9413 -7.6548 23 1 10.8140 3.9328 -8.7171 24 1 9.7717 6.0632 -8.2117 25 1 11.8686 5.4582 -7.1545 26 6 3.4892 -1.1441 -0.0033 27 7 2.1677 -1.1441 0.0005 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6589 2.1339 0.0004 32 1 6.0512 -0.9697 -0.0871 33 1 6.0512 0.4891 0.9326 34 1 5.8346 1.9042 -1.0921 35 1 5.8346 0.4452 -2.1118 36 1 10.0127 0.3822 -0.4850 37 1 12.4647 0.4705 -0.5927 38 1 13.5834 1.7324 -2.3835 39 1 12.2608 2.9173 -4.0804 40 1 7.8332 4.5677 -6.9809 41 1 4.0293 -2.0793 -0.0069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760376134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:42 Heat of formation + Delta-G solvation = -41.176991 kcal Electronic energy + Delta-G solvation = -26148.802027 eV Core-core repulsion = 22187.923071 eV Total energy + Delta-G solvation = -3960.878956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -41.41069 -39.81304 -38.66198 -36.44151 -35.97916 -35.03548 -33.60988 -32.41826 -31.60748 -30.54774 -28.98187 -27.53654 -25.49754 -24.99904 -24.22612 -22.99539 -21.73543 -21.42140 -20.20590 -18.08527 -18.01054 -17.58727 -16.70044 -16.33279 -16.00969 -15.86363 -15.72032 -15.26266 -14.67834 -14.40603 -14.06537 -13.97435 -13.73939 -13.53508 -13.42343 -13.12259 -12.88350 -12.75028 -12.57862 -12.49343 -11.78327 -11.76901 -11.74977 -11.52101 -11.34462 -11.25290 -11.11963 -10.93612 -10.79487 -10.49555 -10.03872 -9.76506 -9.36278 -9.25278 -9.19478 -8.93883 -8.33431 -7.38901 -6.51676 -4.11642 0.48771 0.89746 1.59950 2.29851 3.08335 3.09764 3.12344 3.14268 3.44645 3.46625 3.76716 3.88196 3.93465 4.20670 4.47841 4.54630 4.74025 4.88079 5.00575 5.05301 5.06019 5.13194 5.19709 5.25704 5.34119 5.46241 5.51303 5.57183 5.62652 5.73797 5.87152 5.91350 6.10848 6.12608 6.14833 6.56203 6.64095 6.88192 6.99276 7.04932 7.10071 7.22106 7.29989 7.54935 7.64837 7.86626 8.72633 8.88369 9.57559 10.61987 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.002679 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.760593 B =10448.887111 C =12363.814460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.070 3.930 3 C 0.058 3.942 4 N -0.428 5.428 5 C 0.079 3.921 6 C -0.063 4.063 7 C 0.078 3.922 8 O -0.368 6.368 9 C 0.498 3.502 10 O -0.475 6.475 11 C -0.216 4.216 12 C -0.016 4.016 13 C -0.235 4.235 14 C -0.044 4.044 15 C -0.239 4.239 16 C 0.191 3.809 17 O -0.125 6.125 18 C -0.403 4.403 19 H 0.096 0.904 20 C 0.045 3.955 21 N -0.832 5.832 22 Si 0.943 3.057 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 C 0.062 3.938 27 N -0.439 5.439 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.170 0.830 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.273 0.727 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 -8.446 12.578 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.071 4.071 3 C -0.102 4.102 4 N -0.143 5.143 5 C -0.061 4.061 6 C -0.102 4.102 7 C 0.003 3.997 8 O -0.287 6.287 9 C 0.343 3.657 10 O -0.361 6.361 11 C -0.218 4.218 12 C -0.034 4.034 13 C -0.254 4.254 14 C -0.062 4.062 15 C -0.258 4.258 16 C 0.131 3.869 17 O -0.023 6.023 18 C -0.479 4.479 19 H 0.114 0.886 20 C -0.164 4.164 21 N -0.463 5.463 22 Si 0.767 3.233 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.098 4.098 27 N -0.154 5.154 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.187 0.813 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.361 -8.106 12.106 16.798 hybrid contribution 0.420 0.459 -0.788 1.004 sum -7.941 -7.646 11.319 15.800 Atomic orbital electron populations 1.20679 0.87653 1.03868 1.03582 1.22353 0.98569 0.89768 0.96378 1.23662 0.90500 0.99322 0.96763 1.68288 1.08763 1.29373 1.07870 1.22043 0.97459 0.89857 0.96734 1.20365 0.87155 1.02506 1.00135 1.22656 0.78024 1.01354 0.97642 1.86446 1.21527 1.69255 1.51457 1.21078 0.89102 0.76675 0.78798 1.91011 1.66030 1.41164 1.37921 1.18022 0.88283 1.12602 1.02934 1.20957 0.93554 0.93839 0.95039 1.20542 0.94097 1.08225 1.02539 1.20967 0.98780 0.93612 0.92866 1.21111 0.93016 1.08059 1.03625 1.19240 0.90052 0.88772 0.88833 1.84146 1.33881 1.55236 1.29023 1.21535 0.91972 1.35825 0.98529 0.88625 1.25423 0.95855 0.96926 0.98158 1.70124 1.06131 1.38721 1.31292 0.85689 0.79005 0.78758 0.79852 1.19665 1.20078 1.18966 1.23628 0.90473 0.99191 0.96470 1.68305 1.08653 1.29376 1.09058 0.89906 0.90219 0.90169 0.81270 0.88630 0.88390 0.90437 0.91744 0.85719 0.86975 0.86967 0.84834 0.91725 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.19 36.00 0.37 -0.25 16 2 C 0.07 0.69 6.79 -82.41 -0.56 0.13 16 3 C 0.06 0.61 10.88 -17.37 -0.19 0.42 16 4 N -0.43 -5.56 10.06 -9.29 -0.09 -5.66 16 5 C 0.08 0.93 6.18 -82.41 -0.51 0.42 16 6 C -0.06 -0.71 6.01 -27.88 -0.17 -0.88 16 7 C 0.08 1.25 5.34 37.16 0.20 1.45 16 8 O -0.37 -6.78 9.47 -40.64 -0.38 -7.16 16 9 C 0.50 11.48 7.89 34.46 0.27 11.75 16 10 O -0.48 -13.09 14.96 -26.59 -0.40 -13.49 16 11 C -0.22 -4.83 5.89 -104.83 -0.62 -5.44 16 12 C -0.02 -0.28 9.61 -39.19 -0.38 -0.66 16 13 C -0.24 -3.89 10.02 -39.61 -0.40 -4.28 16 14 C -0.04 -0.76 10.03 -39.53 -0.40 -1.16 16 15 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 16 C 0.19 4.73 6.66 -38.58 -0.26 4.47 16 17 O -0.12 -3.66 7.84 -21.01 -0.16 -3.82 16 18 C -0.40 -11.27 9.49 30.90 0.29 -10.98 16 19 H 0.10 2.41 5.21 -52.48 -0.27 2.14 16 20 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 21 N -0.83 -24.85 13.67 55.48 0.76 -24.09 16 22 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 C 0.06 0.65 10.85 -17.37 -0.19 0.46 16 27 N -0.44 -4.94 10.42 -9.29 -0.10 -5.04 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.10 0.84 7.89 -51.93 -0.41 0.43 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.37 7.96 -51.93 -0.41 0.95 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.12 1.89 7.61 -52.49 -0.40 1.49 16 37 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.17 1.26 7.95 -52.49 -0.42 0.84 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -35.72 363.15 -7.64 -43.36 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.72 Total: 4.04 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.98 Total: -8.85 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.57 Total: -34.78 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.95 Total: -24.48 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.72 -7.64 -43.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760376134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.185 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds