Wall clock time and date at job start Tue Mar 31 2020 14:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38392 * 119.99848 * 2 1 4 4 N 1.32119 * 119.99827 * 179.97438 * 3 2 1 5 5 C 1.32155 * 120.00176 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00155 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47343 * 304.99959 * 6 5 4 8 8 O 1.45199 * 109.47261 * 179.97438 * 7 6 5 9 9 C 1.34755 * 116.99642 * 179.97438 * 8 7 6 10 10 O 1.21516 * 120.00613 * 0.02562 * 9 8 7 11 11 C 1.47406 * 119.99639 * 180.02562 * 9 8 7 12 12 C 1.39723 * 120.20222 * 0.27620 * 11 9 8 13 13 C 1.37804 * 119.91132 * 180.27304 * 12 11 9 14 14 C 1.38590 * 120.33478 * 359.70564 * 13 12 11 15 15 C 1.38027 * 120.40963 * 0.02562 * 14 13 12 16 16 C 1.38837 * 120.07780 * 0.02562 * 15 14 13 17 17 O 1.35504 * 120.16263 * 179.97438 * 16 15 14 18 18 C 1.34813 * 117.00336 * 5.59565 * 17 16 15 19 19 H 1.08003 * 119.99735 * 354.93370 * 18 17 16 20 20 C 1.38701 * 120.00240 * 174.93697 * 18 17 16 21 21 N 1.31521 * 119.99788 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00110 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47537 * 89.99762 * 22 20 18 24 24 H 1.48500 * 109.47284 * 209.99750 * 22 20 18 25 25 H 1.48501 * 109.47074 * 329.99867 * 22 20 18 26 26 C 1.38346 * 120.00082 * 0.25626 * 5 4 3 27 27 N 1.32119 * 120.00574 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47344 * 90.00377 * 1 2 3 29 29 H 1.09007 * 109.47155 * 210.00216 * 1 2 3 30 30 H 1.08999 * 109.47569 * 329.99586 * 1 2 3 31 31 H 1.08002 * 120.00362 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47169 * 184.99726 * 6 5 4 33 33 H 1.09004 * 109.47016 * 65.00382 * 6 5 4 34 34 H 1.09003 * 109.46552 * 60.00009 * 7 6 5 35 35 H 1.09001 * 109.46920 * 300.00297 * 7 6 5 36 36 H 1.07998 * 120.04994 * 0.02562 * 12 11 9 37 37 H 1.08006 * 119.83366 * 179.72174 * 13 12 11 38 38 H 1.07992 * 119.79673 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.95774 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99771 * 180.02562 * 21 20 18 41 41 H 1.07997 * 120.00155 * 179.72470 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5201 1.1985 0.0005 5 6 4.1809 0.0540 0.0015 6 6 5.6879 0.0540 0.0015 7 6 6.1979 0.8803 -1.1808 8 8 7.6499 0.8808 -1.1804 9 6 8.2617 1.5683 -2.1649 10 8 7.5999 2.1517 -3.0005 11 6 9.7337 1.6124 -2.2281 12 6 10.4988 0.9384 -1.2729 13 6 11.8746 0.9883 -1.3344 14 6 12.5047 1.6994 -2.3433 15 6 11.7622 2.3657 -3.2972 16 6 10.3751 2.3277 -3.2509 17 8 9.6445 2.9816 -4.1861 18 6 10.3216 3.5543 -5.2015 19 1 11.4016 3.5505 -5.2004 20 6 9.6312 4.1484 -6.2476 21 7 8.3160 4.1526 -6.2492 22 14 10.5694 4.9413 -7.6548 23 1 10.8140 3.9328 -8.7171 24 1 9.7717 6.0632 -8.2117 25 1 11.8686 5.4582 -7.1545 26 6 3.4892 -1.1441 -0.0033 27 7 2.1677 -1.1441 0.0005 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6589 2.1339 0.0004 32 1 6.0512 -0.9697 -0.0871 33 1 6.0512 0.4891 0.9326 34 1 5.8346 1.9042 -1.0921 35 1 5.8346 0.4452 -2.1118 36 1 10.0127 0.3822 -0.4850 37 1 12.4647 0.4705 -0.5927 38 1 13.5834 1.7324 -2.3835 39 1 12.2608 2.9173 -4.0804 40 1 7.8332 4.5677 -6.9809 41 1 4.0293 -2.0793 -0.0069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760376134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:41 Heat of formation + Delta-G solvation = -64.829858 kcal Electronic energy + Delta-G solvation = -26149.827692 eV Core-core repulsion = 22187.923071 eV Total energy + Delta-G solvation = -3961.904621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23279 -41.54612 -40.39231 -38.14044 -37.55481 -36.08457 -34.48261 -34.37967 -32.70657 -31.94419 -30.63456 -28.47188 -27.44224 -25.83117 -25.51033 -24.28294 -23.25999 -22.52950 -21.85745 -19.91606 -19.28827 -18.88077 -18.36739 -17.54981 -17.36446 -17.16501 -16.66395 -16.40559 -16.20193 -16.10045 -15.69236 -15.49343 -15.23672 -14.92661 -14.50447 -14.28723 -14.22870 -13.74793 -13.58517 -13.55800 -13.21784 -13.09919 -12.90622 -12.81097 -12.68972 -12.61643 -12.55172 -12.34635 -12.15783 -12.12830 -11.61915 -11.57611 -11.08859 -10.86564 -10.11531 -10.04438 -9.92052 -9.11686 -8.49383 -6.20704 -0.31403 -0.04415 0.06458 0.69734 1.32260 1.43911 1.51514 1.64179 1.73176 2.13494 2.59772 2.81784 3.01199 3.14751 3.18118 3.36599 3.40390 3.67544 3.84278 3.87713 3.98783 4.09996 4.15155 4.20259 4.24935 4.37776 4.48808 4.52522 4.61642 4.73594 4.79110 4.81044 4.83725 4.95911 5.04986 5.08548 5.13636 5.37077 5.41304 5.48007 5.60778 5.67256 5.92321 6.13499 6.25311 6.74133 6.89100 6.96743 7.71215 8.70921 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.002679 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.760593 B =10448.887111 C =12363.814460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.071 3.929 3 C 0.046 3.954 4 N -0.465 5.465 5 C 0.059 3.941 6 C -0.047 4.047 7 C 0.078 3.922 8 O -0.347 6.347 9 C 0.498 3.502 10 O -0.534 6.534 11 C -0.237 4.237 12 C -0.010 4.010 13 C -0.203 4.203 14 C -0.027 4.027 15 C -0.257 4.257 16 C 0.155 3.845 17 O -0.189 6.189 18 C -0.427 4.427 19 H 0.113 0.887 20 C -0.022 4.022 21 N -0.905 5.905 22 Si 1.024 2.976 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.245 1.245 26 C 0.065 3.935 27 N -0.459 5.459 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.193 0.807 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.130 0.870 40 H 0.272 0.728 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 -10.573 15.099 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.070 4.070 3 C -0.115 4.115 4 N -0.180 5.180 5 C -0.081 4.081 6 C -0.085 4.085 7 C 0.003 3.997 8 O -0.265 6.265 9 C 0.345 3.655 10 O -0.424 6.424 11 C -0.240 4.240 12 C -0.028 4.028 13 C -0.221 4.221 14 C -0.045 4.045 15 C -0.276 4.276 16 C 0.100 3.900 17 O -0.091 6.091 18 C -0.503 4.503 19 H 0.130 0.870 20 C -0.221 4.221 21 N -0.541 5.541 22 Si 0.842 3.158 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.168 1.168 26 C -0.094 4.094 27 N -0.175 5.175 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.210 0.790 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.178 0.822 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.148 0.852 40 H 0.081 0.919 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.901 -10.289 14.710 18.896 hybrid contribution -0.251 0.867 -1.168 1.476 sum -6.153 -9.422 13.541 17.607 Atomic orbital electron populations 1.20801 0.85078 1.05218 1.04423 1.22922 1.00252 0.89212 0.94591 1.24109 0.89923 1.00770 0.96671 1.68235 1.10281 1.30593 1.08848 1.22124 0.97496 0.90241 0.98205 1.20336 0.87085 1.03245 0.97877 1.22841 0.76341 1.01019 0.99519 1.86421 1.22978 1.67724 1.49377 1.21469 0.89788 0.75738 0.78462 1.90998 1.67363 1.43712 1.40315 1.18485 0.88342 1.13391 1.03783 1.21428 0.94445 0.92664 0.94282 1.21243 0.93579 1.05361 1.01955 1.21545 1.01052 0.90953 0.90921 1.21292 0.91724 1.09358 1.05225 1.20016 0.91955 0.89209 0.88796 1.84151 1.35569 1.58483 1.30926 1.22106 0.92894 1.36225 0.99052 0.87033 1.26817 0.96780 0.97413 1.01110 1.70316 1.08563 1.42203 1.32974 0.84527 0.77946 0.77634 0.75658 1.18628 1.19831 1.16820 1.24052 0.90474 0.99776 0.95097 1.68407 1.09067 1.30023 1.09963 0.89111 0.89890 0.87812 0.79011 0.85396 0.87371 0.92934 0.93253 0.82159 0.81499 0.82163 0.85188 0.91904 0.78183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.19 71.24 0.73 -0.33 16 2 C 0.07 1.33 6.79 42.55 0.29 1.62 16 3 C 0.05 0.95 10.88 84.69 0.92 1.87 16 4 N -0.46 -12.33 10.06 -183.29 -1.84 -14.17 16 5 C 0.06 1.36 6.18 42.54 0.26 1.63 16 6 C -0.05 -1.03 6.01 29.85 0.18 -0.85 16 7 C 0.08 2.58 5.34 71.98 0.38 2.97 16 8 O -0.35 -12.90 9.47 -56.66 -0.54 -13.44 16 9 C 0.50 24.02 7.89 70.24 0.55 24.57 16 10 O -0.53 -31.96 14.96 26.78 0.40 -31.56 16 11 C -0.24 -10.70 5.89 -20.00 -0.12 -10.82 16 12 C -0.01 -0.33 9.61 22.53 0.22 -0.11 16 13 C -0.20 -5.46 10.02 22.25 0.22 -5.23 16 14 C -0.03 -0.80 10.03 22.30 0.22 -0.58 16 15 C -0.26 -10.69 9.16 22.36 0.20 -10.49 16 16 C 0.16 7.99 6.66 22.92 0.15 8.14 16 17 O -0.19 -11.93 7.84 1.03 0.01 -11.92 16 18 C -0.43 -25.43 9.49 67.93 0.64 -24.79 16 19 H 0.11 5.88 5.21 -2.91 -0.02 5.86 16 20 C -0.02 -1.27 5.49 84.85 0.47 -0.81 16 21 N -0.91 -58.72 13.67 21.62 0.30 -58.42 16 22 Si 1.02 43.49 29.55 68.60 2.03 45.52 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 26 C 0.07 1.29 10.85 84.67 0.92 2.20 16 27 N -0.46 -9.88 10.42 -183.30 -1.91 -11.79 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.10 0.62 8.09 -2.39 -0.02 0.60 16 31 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.13 1.91 7.89 -2.39 -0.02 1.89 16 33 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.05 2.01 7.96 -2.39 -0.02 1.99 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.16 4.04 7.61 -2.91 -0.02 4.01 16 37 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.13 5.40 5.64 -2.91 -0.02 5.38 16 40 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 41 H 0.20 2.48 7.95 -2.91 -0.02 2.46 16 Total: -1.00 -89.54 363.15 5.76 -83.78 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 1.07 Total: 23.02 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 6.25 Total: -11.01 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -3.46 Total: -84.39 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -0.13 Total: -56.92 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -89.54 5.76 -83.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760376134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.949 kcal (2) G-P(sol) polarization free energy of solvation -89.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds