Wall clock time and date at job start Tue Mar 31 2020 15:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.38542 * 120.00070 * 274.99866 * 13 3 2 15 15 N 1.28222 * 124.90261 * 180.02562 * 14 13 3 16 16 N 1.38850 * 116.65544 * 179.97438 * 15 14 13 17 17 C 1.38322 * 139.63549 * 179.97438 * 16 15 14 18 18 C 1.35721 * 107.04441 * 179.97438 * 17 16 15 19 19 C 1.48328 * 126.01684 * 180.02562 * 18 17 16 20 20 C 1.39387 * 120.12375 * 359.72441 * 19 18 17 21 21 C 1.38007 * 119.87222 * 179.71684 * 20 19 18 22 22 C 1.38335 * 120.12549 * 0.56131 * 21 20 19 23 23 C 1.38335 * 120.24759 * 359.71711 * 22 21 20 24 24 C 1.38005 * 120.12740 * 0.02562 * 23 22 21 25 25 N 1.34538 * 107.97031 * 359.97438 * 18 17 16 26 26 C 1.32276 * 109.00875 * 359.97438 * 25 18 17 27 27 S 1.75744 * 124.90180 * 359.69663 * 14 13 3 28 28 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 30 30 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 31 31 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 32 32 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 33 33 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00005 * 95.00592 * 13 3 2 35 35 H 1.08001 * 126.48089 * 0.02562 * 17 16 15 36 36 H 1.07996 * 120.06193 * 0.02562 * 20 19 18 37 37 H 1.07994 * 119.93998 * 180.29395 * 21 20 19 38 38 H 1.07989 * 119.87775 * 179.69420 * 22 21 20 39 39 H 1.08007 * 119.93443 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.06095 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6522 2.0975 1.2518 14 6 0.4009 2.6802 1.3701 15 7 -0.0345 3.2768 2.4182 16 7 -1.3184 3.8007 2.3487 17 6 -2.2177 4.4947 3.1380 18 6 -3.3364 4.6849 2.3934 19 6 -4.5677 5.3856 2.8325 20 6 -4.6497 5.9163 4.1189 21 6 -5.7956 6.5723 4.5200 22 6 -6.8661 6.6937 3.6523 23 6 -6.7925 6.1639 2.3765 24 6 -5.6495 5.5104 1.9627 25 7 -3.1315 4.1269 1.1864 26 6 -1.9202 3.5963 1.1572 27 16 -0.8157 2.7157 0.1023 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.8771 0.4812 -2.1123 34 1 2.2717 2.1233 1.9977 35 1 -2.0593 4.8238 4.1544 36 1 -3.8161 5.8185 4.7985 37 1 -5.8585 6.9880 5.5148 38 1 -7.7627 7.2036 3.9721 39 1 -7.6311 6.2620 1.7030 40 1 -5.5931 5.0976 0.9663 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762816715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:59 Heat of formation + Delta-G solvation = 159.192871 kcal Electronic energy + Delta-G solvation = -24108.722298 eV Core-core repulsion = 20631.577654 eV Total energy + Delta-G solvation = -3477.144645 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.20550 -39.13193 -38.20540 -36.32079 -33.10482 -32.18617 -31.65803 -31.10981 -30.27778 -28.44552 -27.35314 -24.01874 -23.45191 -22.99820 -22.49585 -21.30306 -20.63966 -20.24789 -18.87567 -17.45979 -16.92379 -16.26337 -16.10974 -15.84821 -15.47233 -15.07874 -14.71241 -14.38352 -14.21131 -14.11490 -13.54441 -13.48343 -13.36182 -13.04201 -12.66171 -12.44124 -12.21450 -12.13176 -11.53670 -11.43341 -11.22668 -11.18735 -11.01583 -10.63430 -10.53632 -10.20281 -9.96395 -9.86324 -9.77538 -9.62161 -9.05266 -8.99273 -8.58431 -7.96786 -7.59819 -6.46913 -4.53966 0.64358 0.88671 1.30694 1.45321 1.50552 1.87375 2.27943 2.91221 3.01582 3.11018 3.16116 3.69055 3.89434 4.04303 4.35803 4.52552 4.82416 4.83588 4.84820 5.00816 5.16560 5.34511 5.45765 5.49515 5.56224 5.61969 5.64223 5.77546 5.95387 5.96709 6.05230 6.18852 6.26752 6.32529 6.35731 6.38480 6.47452 6.56351 6.78864 6.86714 6.98518 7.00861 7.56761 7.74710 7.91857 8.07683 8.51645 9.08187 10.64414 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.034729 B = 0.002583 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.054915 B =10836.455059 C =11241.903962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.149 4.149 3 C 0.245 3.755 4 H 0.046 0.954 5 C -0.542 4.542 6 H 0.088 0.912 7 C 0.085 3.915 8 N -0.879 5.879 9 Si 0.879 3.121 10 H -0.270 1.270 11 H -0.261 1.261 12 H -0.288 1.288 13 N -0.637 5.637 14 C 0.360 3.640 15 N -0.362 5.362 16 N -0.277 5.277 17 C 0.007 3.993 18 C 0.056 3.944 19 C 0.009 3.991 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.094 4.094 25 N -0.438 5.438 26 C 0.092 3.908 27 S 0.172 5.828 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.272 0.728 34 H 0.418 0.582 35 H 0.183 0.817 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.372 5.970 7.183 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.188 4.188 3 C 0.142 3.858 4 H 0.064 0.936 5 C -0.580 4.580 6 H 0.106 0.894 7 C -0.121 4.121 8 N -0.514 5.514 9 Si 0.707 3.293 10 H -0.197 1.197 11 H -0.185 1.185 12 H -0.215 1.215 13 N -0.275 5.275 14 C -0.027 4.027 15 N -0.196 5.196 16 N -0.047 5.047 17 C -0.132 4.132 18 C -0.077 4.077 19 C 0.008 3.992 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.113 4.113 25 N -0.162 5.162 26 C -0.277 4.277 27 S 0.404 5.596 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.257 0.743 35 H 0.201 0.799 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.334 5.566 5.920 20.054 hybrid contribution 0.318 -0.152 0.797 0.872 sum -18.016 5.414 6.717 19.975 Atomic orbital electron populations 1.22250 0.97301 1.01493 1.01385 1.22480 0.93967 0.99601 1.02773 1.19608 0.97675 0.88573 0.79975 0.93623 1.20798 0.87249 1.41239 1.08689 0.89450 1.24806 0.94971 0.94833 0.97512 1.69833 1.08652 1.43106 1.29803 0.86969 0.80772 0.80215 0.81297 1.19704 1.18543 1.21501 1.44744 1.07935 1.55581 1.19224 1.24483 0.93474 0.92765 0.91992 1.74213 0.95283 1.27829 1.22228 1.47131 1.08130 1.38232 1.11229 1.22352 0.87999 1.04086 0.98723 1.18938 0.93895 1.04246 0.90651 1.17739 0.90701 0.97119 0.93678 1.21103 0.98486 0.98421 0.94980 1.21003 0.93398 0.99571 0.99743 1.21187 0.98665 1.00277 0.94180 1.21106 0.97912 0.98493 0.96343 1.21254 0.92141 0.97919 0.99972 1.70483 1.11242 1.13945 1.20482 1.26934 0.97495 1.11028 0.92274 1.86001 1.03965 1.58283 1.11363 0.92405 0.92921 0.92517 0.91512 0.90835 0.91760 0.74259 0.79945 0.85800 0.85896 0.86223 0.85947 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 8.16 37.16 0.30 -2.32 16 2 C -0.15 -2.75 5.11 -26.73 -0.14 -2.88 16 3 C 0.24 4.89 1.82 -69.08 -0.13 4.76 16 4 H 0.05 0.94 6.32 -51.93 -0.33 0.61 16 5 C -0.54 -13.02 9.31 -34.44 -0.32 -13.34 16 6 H 0.09 2.27 7.98 -52.49 -0.42 1.85 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 8 N -0.88 -23.97 13.96 55.43 0.77 -23.20 16 9 Si 0.88 18.98 24.41 -169.99 -4.15 14.83 16 10 H -0.27 -5.65 6.83 56.52 0.39 -5.26 16 11 H -0.26 -5.29 6.53 56.52 0.37 -4.92 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.64 -11.37 5.16 -55.98 -0.29 -11.66 16 14 C 0.36 6.34 6.98 -88.92 -0.62 5.72 16 15 N -0.36 -6.55 12.02 30.48 0.37 -6.18 16 16 N -0.28 -4.89 4.38 -12.23 -0.05 -4.94 16 17 C 0.01 0.11 11.42 -15.52 -0.18 -0.07 16 18 C 0.06 0.86 6.84 -83.43 -0.57 0.29 16 19 C 0.01 0.12 5.88 -104.90 -0.62 -0.50 16 20 C -0.11 -1.14 9.56 -39.24 -0.38 -1.52 16 21 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 22 C -0.12 -1.08 10.04 -39.51 -0.40 -1.47 16 23 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 24 C -0.09 -1.13 9.70 -39.24 -0.38 -1.51 16 25 N -0.44 -7.71 11.00 -10.08 -0.11 -7.82 16 26 C 0.09 1.65 8.98 -88.87 -0.80 0.86 16 27 S 0.17 2.88 17.85 -107.50 -1.92 0.96 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.83 5.31 -51.62 -0.27 0.56 16 30 H 0.06 0.88 6.78 -51.93 -0.35 0.53 16 31 H 0.07 1.30 3.22 -51.93 -0.17 1.13 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.42 7.07 8.66 -40.82 -0.35 6.72 16 35 H 0.18 2.07 7.27 -52.49 -0.38 1.69 16 36 H 0.12 1.04 7.00 -52.49 -0.37 0.67 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.13 1.63 7.86 -52.49 -0.41 1.21 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -28.22 337.70 -9.75 -37.97 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.35 Total: 7.90 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -5.11 Total: -12.96 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.69 Total: -53.80 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.15 Total: 14.83 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.92 Total: 0.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.22 -9.75 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762816715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.167 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds