Wall clock time and date at job start Tue Mar 31 2020 15:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47430 * 184.99730 * 3 2 1 6 6 H 1.07999 * 120.00193 * 240.00552 * 5 3 2 7 7 C 1.37879 * 119.99398 * 59.99633 * 5 3 2 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.38542 * 120.00070 * 274.99866 * 13 3 2 15 15 N 1.28222 * 124.90261 * 180.02562 * 14 13 3 16 16 N 1.38850 * 116.65544 * 179.97438 * 15 14 13 17 17 C 1.38322 * 139.63549 * 179.97438 * 16 15 14 18 18 C 1.35721 * 107.04441 * 179.97438 * 17 16 15 19 19 C 1.48328 * 126.01684 * 180.02562 * 18 17 16 20 20 C 1.39387 * 120.12375 * 359.72441 * 19 18 17 21 21 C 1.38007 * 119.87222 * 179.71684 * 20 19 18 22 22 C 1.38335 * 120.12549 * 0.56131 * 21 20 19 23 23 C 1.38335 * 120.24759 * 359.71711 * 22 21 20 24 24 C 1.38005 * 120.12740 * 0.02562 * 23 22 21 25 25 N 1.34538 * 107.97031 * 359.97438 * 18 17 16 26 26 C 1.32276 * 109.00875 * 359.97438 * 25 18 17 27 27 S 1.75744 * 124.90180 * 359.69663 * 14 13 3 28 28 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47886 * 300.00484 * 1 2 3 30 30 H 1.09001 * 109.46995 * 60.00249 * 1 2 3 31 31 H 1.08994 * 109.47388 * 240.00046 * 2 1 3 32 32 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 33 33 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00005 * 95.00592 * 13 3 2 35 35 H 1.08001 * 126.48089 * 0.02562 * 17 16 15 36 36 H 1.07996 * 120.06193 * 0.02562 * 20 19 18 37 37 H 1.07994 * 119.93998 * 180.29395 * 21 20 19 38 38 H 1.07989 * 119.87775 * 179.69420 * 22 21 20 39 39 H 1.08007 * 119.93443 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.06095 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 5.4539 0.8797 -1.3357 9 14 3.0964 0.1100 -2.5706 10 1 2.8745 -1.3260 -2.2645 11 1 1.7881 0.8093 -2.6394 12 1 3.7942 0.2359 -3.8754 13 7 1.6522 2.0975 1.2518 14 6 0.4009 2.6802 1.3701 15 7 -0.0345 3.2768 2.4182 16 7 -1.3184 3.8007 2.3487 17 6 -2.2177 4.4947 3.1380 18 6 -3.3364 4.6849 2.3934 19 6 -4.5677 5.3856 2.8325 20 6 -4.6497 5.9163 4.1189 21 6 -5.7956 6.5723 4.5200 22 6 -6.8661 6.6937 3.6523 23 6 -6.7925 6.1639 2.3765 24 6 -5.6495 5.5104 1.9627 25 7 -3.1315 4.1269 1.1864 26 6 -1.9202 3.5963 1.1572 27 16 -0.8157 2.7157 0.1023 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.8771 0.4812 -2.1123 34 1 2.2717 2.1233 1.9977 35 1 -2.0593 4.8238 4.1544 36 1 -3.8161 5.8185 4.7985 37 1 -5.8585 6.9880 5.5148 38 1 -7.7627 7.2036 3.9721 39 1 -7.6311 6.2620 1.7030 40 1 -5.5931 5.0976 0.9663 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762816715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:58 Heat of formation + Delta-G solvation = 143.729691 kcal Electronic energy + Delta-G solvation = -24109.392832 eV Core-core repulsion = 20631.577654 eV Total energy + Delta-G solvation = -3477.815178 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.105 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -43.45752 -40.05473 -39.50002 -37.72177 -34.76585 -33.67294 -32.66595 -32.01136 -31.44951 -29.81940 -28.73732 -25.38808 -24.72373 -24.22433 -23.43030 -22.71362 -21.91520 -21.32401 -20.22644 -19.06718 -17.93598 -17.63558 -17.50161 -17.23764 -16.62239 -16.14469 -15.77439 -15.76765 -15.72889 -15.18858 -14.90935 -14.41656 -14.28336 -14.20145 -14.03654 -13.81287 -13.61462 -13.41593 -13.08239 -12.78346 -12.51745 -12.23022 -12.07747 -11.97664 -11.82111 -11.70865 -11.39259 -11.36166 -11.14851 -11.06873 -10.83010 -9.79873 -9.71595 -9.31437 -8.77878 -8.40782 -6.51228 -0.67659 -0.11493 0.12443 0.33341 0.55905 0.56021 0.94220 1.31447 1.37889 1.45753 1.84687 2.24101 2.33056 2.93618 3.06397 3.12814 3.46588 3.99046 4.08053 4.14800 4.16660 4.19830 4.21981 4.30704 4.42391 4.53218 4.61924 4.73101 4.82220 4.88960 4.95755 4.96471 5.02534 5.21465 5.25063 5.27728 5.36695 5.46756 5.62734 5.66435 5.68563 6.07268 6.12938 6.27433 6.41024 6.55931 6.62692 7.14967 8.74024 Molecular weight = 328.11amu Principal moments of inertia in cm(-1) A = 0.034729 B = 0.002583 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.054915 B =10836.455059 C =11241.903962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.148 4.148 3 C 0.252 3.748 4 H 0.046 0.954 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.032 3.968 8 N -0.930 5.930 9 Si 0.930 3.070 10 H -0.255 1.255 11 H -0.238 1.238 12 H -0.296 1.296 13 N -0.638 5.638 14 C 0.356 3.644 15 N -0.370 5.370 16 N -0.287 5.287 17 C 0.003 3.997 18 C 0.055 3.945 19 C -0.022 4.022 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.113 4.113 25 N -0.456 5.456 26 C 0.065 3.935 27 S 0.193 5.807 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.272 0.728 34 H 0.420 0.580 35 H 0.217 0.783 36 H 0.141 0.859 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.634 6.521 8.245 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.186 4.186 3 C 0.148 3.852 4 H 0.063 0.937 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.169 4.169 8 N -0.568 5.568 9 Si 0.755 3.245 10 H -0.181 1.181 11 H -0.161 1.161 12 H -0.223 1.223 13 N -0.277 5.277 14 C -0.031 4.031 15 N -0.203 5.203 16 N -0.059 5.059 17 C -0.134 4.134 18 C -0.078 4.078 19 C -0.023 4.023 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.132 4.132 25 N -0.181 5.181 26 C -0.303 4.303 27 S 0.425 5.575 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.260 0.740 35 H 0.233 0.767 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.638 6.132 7.010 23.558 hybrid contribution 1.197 -0.157 0.619 1.357 sum -20.441 5.975 7.629 22.621 Atomic orbital electron populations 1.22209 0.95042 1.03171 1.01537 1.22385 0.95927 0.97785 1.02545 1.19368 0.94927 0.90075 0.80807 0.93656 1.21018 0.89458 1.39808 1.07516 0.92704 1.25598 0.95851 0.95497 0.99920 1.69972 1.10677 1.45228 1.30884 0.86131 0.80052 0.80397 0.77896 1.18088 1.16093 1.22340 1.44461 1.08440 1.56091 1.18701 1.24425 0.93356 0.92745 0.92563 1.74117 0.95852 1.27670 1.22692 1.47306 1.08020 1.38882 1.11712 1.23013 0.87269 1.03246 0.99885 1.19464 0.94959 1.03529 0.89836 1.17877 0.90165 0.99013 0.95254 1.21363 0.99783 0.97849 0.94082 1.21409 0.92581 0.98539 1.01082 1.21616 0.99651 0.98965 0.93397 1.21368 0.97582 0.97850 0.97418 1.21283 0.93244 0.99111 0.99521 1.70471 1.11280 1.14462 1.21889 1.27147 0.98015 1.12235 0.92919 1.85767 1.03096 1.58020 1.10643 0.90002 0.93126 0.92007 0.92170 0.90657 0.91826 0.74026 0.76668 0.84093 0.82873 0.83182 0.83951 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 8.16 71.98 0.59 -4.13 16 2 C -0.15 -5.19 5.11 30.59 0.16 -5.03 16 3 C 0.25 9.94 1.82 44.25 0.08 10.02 16 4 H 0.05 1.82 6.32 -2.39 -0.02 1.80 16 5 C -0.54 -26.50 9.31 25.60 0.24 -26.26 16 6 H 0.05 2.98 7.98 -2.91 -0.02 2.96 16 7 C 0.03 1.65 5.45 84.66 0.46 2.12 16 8 N -0.93 -52.38 13.96 21.45 0.30 -52.08 16 9 Si 0.93 38.53 24.41 68.60 1.67 40.20 16 10 H -0.26 -9.92 6.83 99.48 0.68 -9.24 16 11 H -0.24 -8.87 6.53 99.48 0.65 -8.22 16 12 H -0.30 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.64 -22.74 5.16 -331.02 -1.71 -24.45 16 14 C 0.36 12.36 6.98 179.76 1.26 13.62 16 15 N -0.37 -13.20 12.02 -57.47 -0.69 -13.89 16 16 N -0.29 -9.97 4.38 -192.61 -0.84 -10.81 16 17 C 0.00 0.09 11.42 83.08 0.95 1.04 16 18 C 0.06 1.67 6.84 40.83 0.28 1.95 16 19 C -0.02 -0.53 5.88 -20.04 -0.12 -0.65 16 20 C -0.11 -2.03 9.56 22.49 0.22 -1.81 16 21 C -0.12 -1.65 10.03 22.24 0.22 -1.42 16 22 C -0.12 -1.61 10.04 22.32 0.22 -1.39 16 23 C -0.12 -2.12 10.03 22.24 0.22 -1.90 16 24 C -0.11 -2.63 9.70 22.49 0.22 -2.42 16 25 N -0.46 -16.10 11.00 -185.81 -2.04 -18.14 16 26 C 0.07 2.32 8.98 179.74 1.61 3.93 16 27 S 0.19 6.30 17.85 -56.49 -1.01 5.29 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.51 5.31 -2.59 -0.01 1.49 16 30 H 0.06 1.75 6.78 -2.39 -0.02 1.73 16 31 H 0.06 2.21 3.22 -2.39 -0.01 2.20 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 34 H 0.42 14.46 8.66 -92.71 -0.80 13.66 16 35 H 0.22 4.41 7.27 -2.91 -0.02 4.39 16 36 H 0.14 1.95 7.00 -2.91 -0.02 1.93 16 37 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.15 1.14 8.06 -2.92 -0.02 1.11 16 39 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.12 2.94 7.86 -2.91 -0.02 2.92 16 Total: -1.00 -62.72 337.70 2.50 -60.23 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.21 Total: 25.99 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 6.61 Total: -12.34 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -4.99 Total: -119.37 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.67 Total: 40.20 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -1.01 Total: 5.29 kcal Total: -62.72 2.50 -60.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762816715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.955 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds