Wall clock time and date at job start Tue Mar 31 2020 16:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36433 * 124.80662 * 2 1 4 4 C 1.34434 * 109.08354 * 180.02562 * 3 2 1 5 5 C 1.46745 * 106.37589 * 0.02562 * 4 3 2 6 6 C 1.47101 * 127.02478 * 180.02562 * 5 4 3 7 7 O 1.21552 * 120.00376 * 180.02562 * 6 5 4 8 8 O 1.34787 * 120.00147 * 0.02562 * 6 5 4 9 9 C 1.45194 * 117.00246 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47400 * 180.02562 * 9 8 6 11 11 O 1.21280 * 119.99672 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00366 * 179.97438 * 10 9 8 13 13 C 1.37146 * 119.99898 * 354.95187 * 12 10 9 14 14 H 1.08000 * 119.99621 * 344.74351 * 13 12 10 15 15 C 1.38889 * 120.00031 * 164.73957 * 13 12 10 16 16 N 1.31418 * 120.00094 * 343.62416 * 15 13 12 17 17 Si 1.86802 * 120.00007 * 163.62287 * 15 13 12 18 18 H 1.48500 * 109.46876 * 90.00126 * 17 15 13 19 19 H 1.48494 * 109.47246 * 209.99888 * 17 15 13 20 20 H 1.48496 * 109.47129 * 330.00290 * 17 15 13 21 21 C 1.39784 * 120.00365 * 174.95322 * 12 10 9 22 22 C 1.38960 * 120.07870 * 101.20872 * 21 12 10 23 23 C 1.38085 * 119.92186 * 179.79551 * 22 21 12 24 24 C 1.38315 * 120.07665 * 0.45865 * 23 22 21 25 25 C 1.38306 * 120.15588 * 359.79060 * 24 23 22 26 26 C 1.38088 * 120.07910 * 359.97438 * 25 24 23 27 27 C 1.34628 * 124.81231 * 180.31464 * 2 1 3 28 28 H 1.08994 * 109.47308 * 90.02644 * 1 2 3 29 29 H 1.08999 * 109.46396 * 210.02900 * 1 2 3 30 30 H 1.08992 * 109.46851 * 330.02393 * 1 2 3 31 31 H 1.07997 * 125.45464 * 359.97438 * 3 2 1 32 32 H 1.07996 * 126.80967 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47485 * 59.99439 * 9 8 6 34 34 H 1.09001 * 109.47050 * 300.00126 * 9 8 6 35 35 H 0.96998 * 120.00030 * 185.01570 * 16 15 13 36 36 H 1.07993 * 120.03832 * 359.97438 * 22 21 12 37 37 H 1.07994 * 119.96202 * 180.25150 * 23 22 21 38 38 H 1.07997 * 119.91916 * 179.77039 * 24 23 22 39 39 H 1.08000 * 119.96539 * 179.97438 * 25 24 23 40 40 H 1.07997 * 120.03751 * 179.97438 * 26 25 24 41 41 H 1.07994 * 125.89516 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2438 1.1202 0.0000 4 6 3.5379 0.7559 -0.0006 5 6 3.5546 -0.7114 -0.0016 6 6 4.7390 -1.5838 -0.0019 7 8 4.6042 -2.7918 -0.0033 8 8 5.9739 -1.0436 -0.0008 9 6 7.0964 -1.9646 -0.0018 10 6 8.3860 -1.1849 0.0003 11 8 8.3615 0.0276 0.0020 12 7 9.5666 -1.8351 0.0003 13 6 9.5964 -3.2024 0.1029 14 1 8.7170 -3.7388 0.4275 15 6 10.7575 -3.8971 -0.2106 16 7 11.7091 -3.3091 -0.9004 17 14 10.9664 -5.6673 0.3481 18 1 10.4340 -6.5814 -0.6941 19 1 12.4077 -5.9509 0.5658 20 1 10.2235 -5.8769 1.6167 21 6 10.7606 -1.1159 -0.1042 22 6 11.5258 -0.8679 1.0290 23 6 12.7069 -0.1608 0.9214 24 6 13.1239 0.3088 -0.3110 25 6 12.3622 0.0684 -1.4401 26 6 11.1824 -0.6423 -1.3406 27 6 2.2336 -1.1053 -0.0061 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3632 -0.8897 0.5143 30 1 -0.3633 0.8901 0.5134 31 1 1.8791 2.1367 -0.0004 32 1 4.3950 1.4129 -0.0011 33 1 7.0515 -2.5911 -0.8926 34 1 7.0510 -2.5936 0.8872 35 1 12.4874 -3.8150 -1.1819 36 1 11.1985 -1.2304 1.9922 37 1 13.3041 0.0288 1.8010 38 1 14.0462 0.8648 -0.3916 39 1 12.6905 0.4368 -2.4008 40 1 10.5880 -0.8293 -2.2227 41 1 1.8768 -2.1246 -0.0121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764120566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:54 Heat of formation + Delta-G solvation = -18.603016 kcal Electronic energy + Delta-G solvation = -26844.604830 eV Core-core repulsion = 22884.704755 eV Total energy + Delta-G solvation = -3959.900075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26344 -39.73816 -39.07799 -37.21393 -35.68841 -34.69086 -32.99005 -31.70825 -29.86503 -29.68860 -29.24343 -27.74554 -26.57578 -24.95933 -23.07865 -21.57011 -21.46988 -20.40660 -19.57579 -19.30337 -17.96329 -17.84988 -16.46095 -16.10724 -16.03055 -15.51029 -15.41755 -15.13834 -14.72444 -14.43718 -14.25007 -14.02545 -13.45436 -13.41380 -13.21204 -12.89673 -12.66044 -12.57371 -12.41275 -12.30711 -11.94188 -11.86421 -11.55914 -11.44446 -11.14106 -10.93405 -10.51982 -10.35610 -10.29039 -10.16542 -10.05932 -9.43342 -8.73868 -8.60581 -8.45335 -8.16050 -7.84680 -7.56241 -6.27603 -4.06209 1.59627 2.35121 2.45159 2.52736 2.55220 3.07920 3.16679 3.20538 3.24878 3.52865 3.67642 4.03777 4.41219 4.63697 4.75222 4.76047 4.85975 4.88347 5.01306 5.04781 5.34353 5.46063 5.76949 5.81674 5.85699 5.88250 5.94422 5.99790 6.05616 6.12609 6.44050 6.58345 6.63378 6.80886 6.86835 6.96047 7.04838 7.06586 7.28683 7.35497 7.47380 7.60076 7.76800 7.97459 8.25853 8.41699 8.95331 9.28493 9.71735 10.57232 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.003050 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.993356 B = 9176.859552 C =10611.099630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.446 5.446 3 C -0.031 4.031 4 C -0.137 4.137 5 C -0.218 4.218 6 C 0.537 3.463 7 O -0.529 6.529 8 O -0.328 6.328 9 C 0.074 3.926 10 C 0.466 3.534 11 O -0.575 6.575 12 N -0.409 5.409 13 C -0.361 4.361 14 H 0.104 0.896 15 C 0.048 3.952 16 N -0.844 5.844 17 Si 0.921 3.079 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.239 3.761 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.145 4.145 25 C -0.121 4.121 26 C -0.066 4.066 27 C 0.079 3.921 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.273 0.727 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.803 5.237 1.041 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.121 5.121 3 C -0.156 4.156 4 C -0.160 4.160 5 C -0.226 4.226 6 C 0.384 3.616 7 O -0.420 6.420 8 O -0.242 6.242 9 C -0.003 4.003 10 C 0.255 3.745 11 O -0.459 6.459 12 N -0.127 5.127 13 C -0.487 4.487 14 H 0.122 0.878 15 C -0.160 4.160 16 N -0.479 5.479 17 Si 0.747 3.253 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.192 1.192 21 C 0.149 3.851 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.163 4.163 25 C -0.140 4.140 26 C -0.085 4.085 27 C -0.057 4.057 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.186 0.814 32 H 0.174 0.826 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.947 5.492 1.015 15.956 hybrid contribution 0.345 -1.437 0.135 1.484 sum -14.602 4.054 1.150 15.197 Atomic orbital electron populations 1.22124 0.76741 1.04709 1.03604 1.43588 1.06817 1.05946 1.55789 1.21771 0.90518 0.91194 1.12162 1.22263 0.96293 0.93225 1.04225 1.19658 0.90004 0.93401 1.19566 1.20137 0.83053 0.86117 0.72335 1.90815 1.87449 1.15707 1.48039 1.86569 1.13964 1.40239 1.83448 1.22578 0.82785 0.90640 1.04277 1.19537 0.84202 0.87594 0.83182 1.90610 1.86957 1.13465 1.54820 1.41185 1.01728 1.06455 1.63307 1.19635 1.00762 0.79774 1.48531 0.87842 1.25263 0.95453 1.00142 0.95167 1.69935 1.09570 1.36702 1.31677 0.86017 0.77917 0.81868 0.79545 1.20109 1.20596 1.19186 1.17052 0.85916 0.89807 0.92343 1.20982 0.95505 0.99839 0.97766 1.20658 0.96530 1.00079 0.96908 1.20744 0.99635 1.02731 0.93173 1.20680 0.95401 1.00445 0.97506 1.20813 0.95581 0.95875 0.96245 1.21992 0.89300 0.91847 1.02576 0.90576 0.89568 0.89491 0.81429 0.82640 0.88716 0.89227 0.91563 0.87428 0.87572 0.87745 0.87536 0.87641 0.80449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.03 59.85 0.66 0.96 16 2 N -0.45 -4.12 3.08 -124.24 -0.38 -4.50 16 3 C -0.03 -0.32 11.32 -16.85 -0.19 -0.51 16 4 C -0.14 -1.86 11.00 -37.49 -0.41 -2.27 16 5 C -0.22 -3.37 6.33 -103.01 -0.65 -4.03 16 6 C 0.54 10.23 7.95 34.33 0.27 10.50 16 7 O -0.53 -10.78 16.71 -19.31 -0.32 -11.10 16 8 O -0.33 -6.96 9.66 -47.41 -0.46 -7.42 16 9 C 0.07 1.62 4.50 36.01 0.16 1.78 16 10 C 0.47 11.72 7.66 -10.99 -0.08 11.63 16 11 O -0.58 -15.81 16.48 -14.10 -0.23 -16.04 16 12 N -0.41 -10.47 2.66 -58.98 -0.16 -10.63 16 13 C -0.36 -9.11 9.19 -14.93 -0.14 -9.24 16 14 H 0.10 2.45 6.46 -52.49 -0.34 2.12 16 15 C 0.05 1.20 5.24 -17.49 -0.09 1.11 16 16 N -0.84 -21.74 10.34 55.49 0.57 -21.16 16 17 Si 0.92 19.49 29.59 -169.99 -5.03 14.46 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 C 0.24 6.03 2.29 -83.70 -0.19 5.83 16 22 C -0.12 -2.84 9.95 -39.37 -0.39 -3.24 16 23 C -0.12 -2.52 10.04 -39.61 -0.40 -2.91 16 24 C -0.14 -2.82 10.04 -39.53 -0.40 -3.22 16 25 C -0.12 -2.53 10.04 -39.61 -0.40 -2.92 16 26 C -0.07 -1.58 8.66 -39.37 -0.34 -1.92 16 27 C 0.08 0.93 11.18 -16.47 -0.18 0.75 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.27 8.13 -51.93 -0.42 -0.16 16 30 H 0.09 0.24 8.13 -51.93 -0.42 -0.19 16 31 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.16 2.15 8.06 -52.49 -0.42 1.72 16 33 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.09 1.86 7.52 -51.93 -0.39 1.47 16 35 H 0.27 6.76 8.32 -40.82 -0.34 6.42 16 36 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 37 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 41 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -33.38 365.55 -8.21 -41.59 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.94 Total: 6.99 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.77 Total: 2.30 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.03 Total: -36.29 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.01 Total: -34.56 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.38 -8.21 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764120566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.990 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds