Wall clock time and date at job start Tue Mar 31 2020 16:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36433 * 124.80662 * 2 1 4 4 C 1.34434 * 109.08354 * 180.02562 * 3 2 1 5 5 C 1.46745 * 106.37589 * 0.02562 * 4 3 2 6 6 C 1.47101 * 127.02478 * 180.02562 * 5 4 3 7 7 O 1.21552 * 120.00376 * 180.02562 * 6 5 4 8 8 O 1.34787 * 120.00147 * 0.02562 * 6 5 4 9 9 C 1.45194 * 117.00246 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47400 * 180.02562 * 9 8 6 11 11 O 1.21280 * 119.99672 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00366 * 179.97438 * 10 9 8 13 13 C 1.37146 * 119.99898 * 354.95187 * 12 10 9 14 14 H 1.08000 * 119.99621 * 344.74351 * 13 12 10 15 15 C 1.38889 * 120.00031 * 164.73957 * 13 12 10 16 16 N 1.31418 * 120.00094 * 343.62416 * 15 13 12 17 17 Si 1.86802 * 120.00007 * 163.62287 * 15 13 12 18 18 H 1.48500 * 109.46876 * 90.00126 * 17 15 13 19 19 H 1.48494 * 109.47246 * 209.99888 * 17 15 13 20 20 H 1.48496 * 109.47129 * 330.00290 * 17 15 13 21 21 C 1.39784 * 120.00365 * 174.95322 * 12 10 9 22 22 C 1.38960 * 120.07870 * 101.20872 * 21 12 10 23 23 C 1.38085 * 119.92186 * 179.79551 * 22 21 12 24 24 C 1.38315 * 120.07665 * 0.45865 * 23 22 21 25 25 C 1.38306 * 120.15588 * 359.79060 * 24 23 22 26 26 C 1.38088 * 120.07910 * 359.97438 * 25 24 23 27 27 C 1.34628 * 124.81231 * 180.31464 * 2 1 3 28 28 H 1.08994 * 109.47308 * 90.02644 * 1 2 3 29 29 H 1.08999 * 109.46396 * 210.02900 * 1 2 3 30 30 H 1.08992 * 109.46851 * 330.02393 * 1 2 3 31 31 H 1.07997 * 125.45464 * 359.97438 * 3 2 1 32 32 H 1.07996 * 126.80967 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47485 * 59.99439 * 9 8 6 34 34 H 1.09001 * 109.47050 * 300.00126 * 9 8 6 35 35 H 0.96998 * 120.00030 * 185.01570 * 16 15 13 36 36 H 1.07993 * 120.03832 * 359.97438 * 22 21 12 37 37 H 1.07994 * 119.96202 * 180.25150 * 23 22 21 38 38 H 1.07997 * 119.91916 * 179.77039 * 24 23 22 39 39 H 1.08000 * 119.96539 * 179.97438 * 25 24 23 40 40 H 1.07997 * 120.03751 * 179.97438 * 26 25 24 41 41 H 1.07994 * 125.89516 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2438 1.1202 0.0000 4 6 3.5379 0.7559 -0.0006 5 6 3.5546 -0.7114 -0.0016 6 6 4.7390 -1.5838 -0.0019 7 8 4.6042 -2.7918 -0.0033 8 8 5.9739 -1.0436 -0.0008 9 6 7.0964 -1.9646 -0.0018 10 6 8.3860 -1.1849 0.0003 11 8 8.3615 0.0276 0.0020 12 7 9.5666 -1.8351 0.0003 13 6 9.5964 -3.2024 0.1029 14 1 8.7170 -3.7388 0.4275 15 6 10.7575 -3.8971 -0.2106 16 7 11.7091 -3.3091 -0.9004 17 14 10.9664 -5.6673 0.3481 18 1 10.4340 -6.5814 -0.6941 19 1 12.4077 -5.9509 0.5658 20 1 10.2235 -5.8769 1.6167 21 6 10.7606 -1.1159 -0.1042 22 6 11.5258 -0.8679 1.0290 23 6 12.7069 -0.1608 0.9214 24 6 13.1239 0.3088 -0.3110 25 6 12.3622 0.0684 -1.4401 26 6 11.1824 -0.6423 -1.3406 27 6 2.2336 -1.1053 -0.0061 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3632 -0.8897 0.5143 30 1 -0.3633 0.8901 0.5134 31 1 1.8791 2.1367 -0.0004 32 1 4.3950 1.4129 -0.0011 33 1 7.0515 -2.5911 -0.8926 34 1 7.0510 -2.5936 0.8872 35 1 12.4874 -3.8150 -1.1819 36 1 11.1985 -1.2304 1.9922 37 1 13.3041 0.0288 1.8010 38 1 14.0462 0.8648 -0.3916 39 1 12.6905 0.4368 -2.4008 40 1 10.5880 -0.8293 -2.2227 41 1 1.8768 -2.1246 -0.0121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764120566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:51 Heat of formation + Delta-G solvation = -35.964647 kcal Electronic energy + Delta-G solvation = -26845.357687 eV Core-core repulsion = 22884.704755 eV Total energy + Delta-G solvation = -3960.652932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.20671 -41.42831 -40.73201 -38.98382 -37.30342 -36.60811 -33.77236 -33.65578 -31.57351 -31.37803 -30.27814 -29.22430 -27.51669 -26.88061 -24.33808 -23.25353 -23.14893 -21.43133 -21.23502 -20.66942 -19.66671 -19.06716 -17.89524 -17.82620 -17.64992 -17.22946 -16.59350 -16.44675 -16.30334 -16.07018 -15.88184 -15.18092 -15.10178 -14.79870 -14.49993 -14.11044 -14.01113 -13.85413 -13.79819 -13.41920 -13.27549 -13.18103 -13.05802 -12.98985 -12.86635 -12.72435 -12.24401 -12.08590 -12.00731 -11.78088 -11.65309 -11.28827 -10.58718 -10.06545 -9.66227 -9.57514 -9.38671 -9.35095 -8.16254 -6.04022 0.42023 0.75021 0.80759 1.33817 1.40727 1.42758 1.46885 1.56535 1.76045 2.04322 2.25285 2.28067 2.90281 3.02938 3.22559 3.84292 3.95851 4.00910 4.03401 4.13237 4.17715 4.24843 4.28903 4.29210 4.39845 4.50871 4.55056 4.75158 4.79176 4.90045 4.96847 5.05336 5.07366 5.32521 5.35763 5.43100 5.62237 5.63689 5.76963 5.79898 5.98253 5.99528 6.21847 6.28940 6.51777 6.79788 6.99796 7.35030 7.78079 8.65788 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.003050 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.993356 B = 9176.859552 C =10611.099630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.434 5.434 3 C -0.004 4.004 4 C -0.175 4.175 5 C -0.269 4.269 6 C 0.532 3.468 7 O -0.553 6.553 8 O -0.345 6.345 9 C 0.086 3.914 10 C 0.451 3.549 11 O -0.611 6.611 12 N -0.411 5.411 13 C -0.384 4.384 14 H 0.110 0.890 15 C 0.012 3.988 16 N -0.861 5.861 17 Si 0.987 3.013 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.263 1.263 21 C 0.206 3.794 22 C -0.147 4.147 23 C -0.119 4.119 24 C -0.137 4.137 25 C -0.120 4.120 26 C -0.094 4.094 27 C 0.097 3.903 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.209 0.791 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.273 0.727 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 5.606 1.430 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.108 5.108 3 C -0.130 4.130 4 C -0.198 4.198 5 C -0.277 4.277 6 C 0.381 3.619 7 O -0.446 6.446 8 O -0.260 6.260 9 C 0.009 3.991 10 C 0.241 3.759 11 O -0.497 6.497 12 N -0.128 5.128 13 C -0.509 4.509 14 H 0.128 0.872 15 C -0.195 4.195 16 N -0.496 5.496 17 Si 0.810 3.190 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.187 1.187 21 C 0.117 3.883 22 C -0.167 4.167 23 C -0.137 4.137 24 C -0.155 4.155 25 C -0.138 4.138 26 C -0.114 4.114 27 C -0.042 4.042 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.226 0.774 32 H 0.157 0.843 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.155 0.845 40 H 0.102 0.898 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.929 5.874 1.400 17.035 hybrid contribution 0.582 -1.459 -0.017 1.571 sum -15.347 4.415 1.383 16.029 Atomic orbital electron populations 1.22565 0.73118 1.06856 1.05372 1.43994 1.08828 1.04793 1.53147 1.22253 0.89195 0.92940 1.08612 1.22270 0.97858 0.92425 1.07268 1.19743 0.90002 0.94091 1.23856 1.20837 0.82978 0.86574 0.71535 1.90770 1.87474 1.16614 1.49727 1.86586 1.14789 1.40577 1.84058 1.22321 0.82121 0.90205 1.04442 1.20038 0.85165 0.87505 0.83156 1.90551 1.87552 1.14829 1.56785 1.41410 1.02257 1.06864 1.62269 1.19996 1.01607 0.79983 1.49321 0.87204 1.26077 0.94828 1.03878 0.94706 1.70091 1.09685 1.37999 1.31807 0.85021 0.77698 0.77085 0.79206 1.19526 1.20419 1.18684 1.17414 0.86331 0.91103 0.93490 1.21139 0.97038 1.01536 0.96984 1.21107 0.95373 0.98306 0.98913 1.21245 1.00611 1.01625 0.91990 1.21082 0.94025 0.99020 0.99699 1.20843 0.97234 0.98047 0.95233 1.22249 0.88188 0.93431 1.00283 0.88921 0.87903 0.87065 0.77393 0.84324 0.88709 0.88590 0.91608 0.88141 0.83943 0.83172 0.84471 0.89752 0.78474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 11.03 127.77 1.41 1.67 16 2 N -0.43 -6.76 3.08 -546.98 -1.69 -8.45 16 3 C 0.00 -0.07 11.32 83.11 0.94 0.87 16 4 C -0.18 -4.90 11.00 23.62 0.26 -4.64 16 5 C -0.27 -8.60 6.33 -18.82 -0.12 -8.72 16 6 C 0.53 21.53 7.95 70.15 0.56 22.09 16 7 O -0.55 -23.63 16.71 19.67 0.33 -23.30 16 8 O -0.34 -15.81 9.66 -50.59 -0.49 -16.30 16 9 C 0.09 4.03 4.50 71.24 0.32 4.35 16 10 C 0.45 24.27 7.66 87.66 0.67 24.95 16 11 O -0.61 -35.92 16.48 15.77 0.26 -35.66 16 12 N -0.41 -22.22 2.66 -458.90 -1.22 -23.44 16 13 C -0.38 -20.08 9.19 84.02 0.77 -19.31 16 14 H 0.11 5.42 6.46 -2.91 -0.02 5.40 16 15 C 0.01 0.59 5.24 84.91 0.44 1.03 16 16 N -0.86 -45.06 10.34 21.65 0.22 -44.83 16 17 Si 0.99 40.18 29.59 68.60 2.03 42.21 16 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 21 C 0.21 10.82 2.29 38.22 0.09 10.91 16 22 C -0.15 -7.04 9.95 22.41 0.22 -6.82 16 23 C -0.12 -4.66 10.04 22.25 0.22 -4.43 16 24 C -0.14 -4.99 10.04 22.30 0.22 -4.76 16 25 C -0.12 -4.87 10.04 22.25 0.22 -4.65 16 26 C -0.09 -4.67 8.66 22.41 0.19 -4.48 16 27 C 0.10 2.18 11.18 84.17 0.94 3.13 16 28 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.10 0.19 8.13 -2.39 -0.02 0.17 16 30 H 0.11 0.04 8.13 -2.39 -0.02 0.02 16 31 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.09 4.34 8.14 -2.39 -0.02 4.32 16 34 H 0.10 4.27 7.52 -2.39 -0.02 4.25 16 35 H 0.27 13.61 8.32 -92.71 -0.77 12.84 16 36 H 0.10 4.78 8.06 -2.91 -0.02 4.75 16 37 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 38 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.08 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.20 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -77.67 365.55 7.87 -69.80 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 1.05 Total: 28.79 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 7.37 Total: 11.19 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -2.68 Total: -76.72 kcal Atomic # 8 Polarization: -75.37 SS G_CDS: 0.10 Total: -75.27 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -77.67 7.87 -69.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764120566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.837 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds