Wall clock time and date at job start Tue Mar 31 2020 16:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35948 * 116.99691 * 2 1 4 4 C 1.38037 * 120.00220 * 0.02562 * 3 2 1 5 5 C 1.40044 * 119.83741 * 179.97438 * 4 3 2 6 6 C 1.46851 * 120.08375 * 179.97438 * 5 4 3 7 7 C 1.35246 * 120.00111 * 136.93708 * 6 5 4 8 8 C 1.46160 * 119.99824 * 348.73766 * 7 6 5 9 9 O 1.21854 * 119.99495 * 353.49139 * 8 7 6 10 10 C 1.47232 * 119.99899 * 173.20850 * 8 7 6 11 11 C 1.38506 * 126.89205 * 0.31134 * 10 8 7 12 12 C 1.39653 * 105.34809 * 179.97438 * 11 10 8 13 13 N 1.30885 * 107.86376 * 359.97438 * 12 11 10 14 14 N 1.28445 * 110.94524 * 359.76214 * 13 12 11 15 15 C 1.46498 * 125.19023 * 180.25581 * 14 13 12 16 16 C 1.40105 * 119.83342 * 0.27678 * 5 4 3 17 17 C 1.37605 * 119.99321 * 359.44410 * 16 5 4 18 18 C 1.39095 * 120.16788 * 0.53375 * 17 16 5 19 19 O 1.35594 * 119.91829 * 179.74095 * 18 17 16 20 20 C 1.34737 * 116.99944 * 354.32813 * 19 18 17 21 21 H 1.08001 * 119.99798 * 5.04957 * 20 19 18 22 22 C 1.38738 * 120.00019 * 185.05833 * 20 19 18 23 23 N 1.31495 * 120.00281 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 120.00007 * 359.97438 * 22 20 19 25 25 H 1.48491 * 109.47010 * 89.99749 * 24 22 20 26 26 H 1.48502 * 109.46803 * 210.00103 * 24 22 20 27 27 H 1.48503 * 109.46759 * 330.00072 * 24 22 20 28 28 H 1.08998 * 109.47544 * 299.99522 * 1 2 3 29 29 H 1.09003 * 109.47374 * 59.99940 * 1 2 3 30 30 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.08005 * 120.08099 * 359.97235 * 4 3 2 32 32 H 1.07998 * 120.00296 * 316.94130 * 6 5 4 33 33 H 1.08001 * 120.00205 * 168.73832 * 7 6 5 34 34 H 1.08001 * 127.31944 * 359.97438 * 11 10 8 35 35 H 1.07998 * 126.06477 * 180.02562 * 12 11 10 36 36 H 1.08992 * 109.47435 * 270.16195 * 15 14 13 37 37 H 1.09007 * 109.46953 * 30.15920 * 15 14 13 38 38 H 1.09001 * 109.47059 * 150.15544 * 15 14 13 39 39 H 1.08001 * 120.00212 * 179.72143 * 16 5 4 40 40 H 1.08009 * 119.91612 * 180.30262 * 17 16 5 41 41 H 0.97001 * 120.00236 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2943 2.3690 0.0005 5 6 1.9336 3.6150 0.0011 6 6 1.1390 4.8500 0.0011 7 6 1.4925 5.8815 0.8012 8 6 2.5044 5.6886 1.8381 9 8 2.9433 4.5740 2.0611 10 6 2.9979 6.8420 2.6087 11 6 2.6011 8.1623 2.4754 12 6 3.3488 8.8701 3.4189 13 7 4.1165 8.0154 4.0460 14 7 3.9342 6.8236 3.6030 15 6 4.6275 5.6276 4.0877 16 6 3.3331 3.6803 -0.0048 17 6 4.0758 2.5219 0.0005 18 6 3.4408 1.2844 0.0004 19 8 4.1776 0.1462 0.0004 20 6 5.5129 0.2819 -0.1184 21 1 5.9570 1.2663 -0.1258 22 6 6.3172 -0.8429 -0.2313 23 7 7.6202 -0.7105 -0.3476 24 14 5.5489 -2.5457 -0.2180 25 1 5.2161 -2.9493 -1.6077 26 1 6.5095 -3.5175 0.3633 27 1 4.3104 -2.5235 0.6011 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2156 2.3140 0.0005 32 1 0.2724 4.9346 -0.6378 33 1 1.0271 6.8478 0.6740 34 1 1.8691 8.5597 1.7878 35 1 3.3012 9.9338 3.5996 36 1 5.5410 5.4787 3.5121 37 1 4.8785 5.7548 5.1409 38 1 3.9790 4.7593 3.9711 39 1 3.8289 4.6398 -0.0089 40 1 5.1547 2.5738 0.0009 41 1 8.1825 -1.4970 -0.4269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766038407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:57 Heat of formation + Delta-G solvation = 47.864614 kcal Electronic energy + Delta-G solvation = -27276.334370 eV Core-core repulsion = 23319.316548 eV Total energy + Delta-G solvation = -3957.017822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -42.51515 -39.94117 -39.00681 -37.75051 -36.25316 -33.59851 -32.94830 -32.38338 -31.17850 -29.67077 -28.77545 -27.16938 -26.68609 -25.51041 -24.38828 -22.46474 -21.68923 -21.39439 -20.23346 -18.85818 -18.04081 -17.80508 -17.20096 -16.41458 -16.18475 -15.76982 -15.30108 -15.23644 -14.95740 -14.62580 -13.98541 -13.95204 -13.85949 -13.75259 -13.64601 -13.48058 -13.24407 -12.84259 -12.75457 -12.39320 -12.31349 -12.23288 -11.63931 -11.57090 -11.15819 -10.93588 -10.86829 -10.73797 -10.59678 -10.24494 -9.68690 -9.48368 -9.26915 -9.23918 -9.06513 -8.81174 -7.95655 -6.89641 -6.49335 -4.09337 0.55347 1.56784 2.15131 2.43141 2.46214 2.59936 3.21610 3.25780 3.41289 3.44144 3.87663 4.02107 4.22148 4.43131 4.51125 4.69360 4.98033 5.01137 5.03962 5.15504 5.17549 5.24437 5.37129 5.42425 5.44364 5.49203 5.52183 5.61375 5.65339 5.71068 5.73154 6.04634 6.12959 6.26140 6.39246 6.44604 6.51213 6.65587 6.84437 6.96844 7.22971 7.44175 7.60027 7.64999 7.88537 8.00987 8.09608 8.85247 9.49225 10.57088 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.003563 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.200150 B = 7855.971531 C = 9356.730863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.310 6.310 3 C 0.040 3.960 4 C -0.133 4.133 5 C -0.159 4.159 6 C 0.030 3.970 7 C -0.263 4.263 8 C 0.440 3.560 9 O -0.432 6.432 10 C -0.052 4.052 11 C -0.184 4.184 12 C -0.012 4.012 13 N -0.284 5.284 14 N -0.261 5.261 15 C 0.082 3.918 16 C -0.020 4.020 17 C -0.207 4.207 18 C 0.159 3.841 19 O -0.195 6.195 20 C -0.387 4.387 21 H 0.109 0.891 22 C 0.066 3.934 23 N -0.871 5.871 24 Si 0.904 3.096 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.255 1.255 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.160 0.840 35 H 0.184 0.816 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.139 0.861 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 13.832 3.180 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.225 6.225 3 C -0.005 4.005 4 C -0.152 4.152 5 C -0.160 4.160 6 C 0.011 3.989 7 C -0.283 4.283 8 C 0.319 3.681 9 O -0.308 6.308 10 C -0.178 4.178 11 C -0.212 4.212 12 C -0.187 4.187 13 N -0.118 5.118 14 N -0.049 5.049 15 C -0.058 4.058 16 C -0.039 4.039 17 C -0.226 4.226 18 C 0.105 3.895 19 O -0.098 6.098 20 C -0.462 4.462 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.508 5.508 24 Si 0.729 3.271 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.178 1.178 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.178 0.822 35 H 0.201 0.799 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.156 0.844 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.132 12.441 4.202 17.878 hybrid contribution -0.880 -0.114 -0.563 1.051 sum -13.012 12.327 3.639 18.290 Atomic orbital electron populations 1.22882 0.80256 1.02901 1.00390 1.86165 1.19553 1.26577 1.90179 1.17929 0.89207 0.84449 1.08873 1.20711 0.98207 0.90790 1.05500 1.18149 0.92894 0.91453 1.13517 1.22484 0.93889 0.91058 0.91448 1.22886 1.04460 1.00527 1.00400 1.19485 0.80689 0.85664 0.82216 1.90863 1.51855 1.25279 1.62773 1.22498 0.99241 0.97864 0.98242 1.22262 1.04466 0.91224 1.03286 1.23564 0.97590 0.99912 0.97680 1.73174 1.23818 0.90614 1.24217 1.45781 1.28051 1.06591 1.24454 1.22406 0.98774 0.83404 1.01246 1.20604 0.91958 0.96846 0.94475 1.20866 1.00902 0.90576 1.10303 1.18577 0.87674 0.86894 0.96357 1.83572 1.20308 1.27514 1.78413 1.20871 0.77331 0.97042 1.50929 0.87419 1.24490 0.94515 0.99569 0.95281 1.69618 1.03164 1.31818 1.46186 0.86183 0.79840 0.81574 0.79507 1.19733 1.20751 1.17824 0.93524 0.93460 0.89146 0.86153 0.85566 0.85033 0.82206 0.79938 0.89429 0.88981 0.87051 0.87907 0.84363 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.31 -6.25 10.28 -34.19 -0.35 -6.61 16 3 C 0.04 0.83 6.70 -39.12 -0.26 0.57 16 4 C -0.13 -2.28 8.78 -38.98 -0.34 -2.62 16 5 C -0.16 -2.63 4.55 -105.04 -0.48 -3.11 16 6 C 0.03 0.37 9.81 -37.16 -0.36 0.00 16 7 C -0.26 -3.01 9.56 -37.47 -0.36 -3.37 16 8 C 0.44 6.18 6.11 -32.75 -0.20 5.98 16 9 O -0.43 -7.38 10.49 5.05 0.05 -7.33 16 10 C -0.05 -0.69 6.95 -82.00 -0.57 -1.26 16 11 C -0.18 -1.96 10.48 -38.95 -0.41 -2.37 16 12 C -0.01 -0.14 12.03 -17.43 -0.21 -0.34 16 13 N -0.28 -3.84 11.90 30.59 0.36 -3.47 16 14 N -0.26 -3.58 3.75 -63.84 -0.24 -3.82 16 15 C 0.08 0.98 10.82 59.85 0.65 1.63 16 16 C -0.02 -0.38 6.57 -39.11 -0.26 -0.63 16 17 C -0.21 -4.52 9.14 -39.49 -0.36 -4.88 16 18 C 0.16 3.78 6.67 -38.73 -0.26 3.52 16 19 O -0.19 -5.26 8.35 -13.82 -0.12 -5.37 16 20 C -0.39 -10.89 9.94 30.92 0.31 -10.58 16 21 H 0.11 3.07 5.41 -52.49 -0.28 2.78 16 22 C 0.07 1.85 5.50 -17.51 -0.10 1.75 16 23 N -0.87 -24.89 13.96 55.48 0.77 -24.11 16 24 Si 0.90 21.89 28.62 -169.99 -4.86 17.02 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.25 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.12 1.66 6.28 -52.48 -0.33 1.33 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.07 7.28 -52.49 -0.38 0.68 16 34 H 0.16 1.18 7.50 -52.49 -0.39 0.79 16 35 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.11 1.45 6.31 -51.93 -0.33 1.12 16 39 H 0.10 1.77 6.99 -52.49 -0.37 1.41 16 40 H 0.14 3.15 5.62 -52.48 -0.29 2.86 16 41 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -33.40 351.63 -5.72 -39.12 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.42 Total: 3.58 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.22 Total: -14.31 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.90 Total: -31.40 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.41 Total: -19.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.86 Total: 17.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.40 -5.72 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766038407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.984 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds