Wall clock time and date at job start Tue Mar 31 2020 16:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35948 * 116.99691 * 2 1 4 4 C 1.38037 * 120.00220 * 0.02562 * 3 2 1 5 5 C 1.40044 * 119.83741 * 179.97438 * 4 3 2 6 6 C 1.46851 * 120.08375 * 179.97438 * 5 4 3 7 7 C 1.35246 * 120.00111 * 136.93708 * 6 5 4 8 8 C 1.46160 * 119.99824 * 348.73766 * 7 6 5 9 9 O 1.21854 * 119.99495 * 353.49139 * 8 7 6 10 10 C 1.47232 * 119.99899 * 173.20850 * 8 7 6 11 11 C 1.38506 * 126.89205 * 0.31134 * 10 8 7 12 12 C 1.39653 * 105.34809 * 179.97438 * 11 10 8 13 13 N 1.30885 * 107.86376 * 359.97438 * 12 11 10 14 14 N 1.28445 * 110.94524 * 359.76214 * 13 12 11 15 15 C 1.46498 * 125.19023 * 180.25581 * 14 13 12 16 16 C 1.40105 * 119.83342 * 0.27678 * 5 4 3 17 17 C 1.37605 * 119.99321 * 359.44410 * 16 5 4 18 18 C 1.39095 * 120.16788 * 0.53375 * 17 16 5 19 19 O 1.35594 * 119.91829 * 179.74095 * 18 17 16 20 20 C 1.34737 * 116.99944 * 354.32813 * 19 18 17 21 21 H 1.08001 * 119.99798 * 5.04957 * 20 19 18 22 22 C 1.38738 * 120.00019 * 185.05833 * 20 19 18 23 23 N 1.31495 * 120.00281 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 120.00007 * 359.97438 * 22 20 19 25 25 H 1.48491 * 109.47010 * 89.99749 * 24 22 20 26 26 H 1.48502 * 109.46803 * 210.00103 * 24 22 20 27 27 H 1.48503 * 109.46759 * 330.00072 * 24 22 20 28 28 H 1.08998 * 109.47544 * 299.99522 * 1 2 3 29 29 H 1.09003 * 109.47374 * 59.99940 * 1 2 3 30 30 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.08005 * 120.08099 * 359.97235 * 4 3 2 32 32 H 1.07998 * 120.00296 * 316.94130 * 6 5 4 33 33 H 1.08001 * 120.00205 * 168.73832 * 7 6 5 34 34 H 1.08001 * 127.31944 * 359.97438 * 11 10 8 35 35 H 1.07998 * 126.06477 * 180.02562 * 12 11 10 36 36 H 1.08992 * 109.47435 * 270.16195 * 15 14 13 37 37 H 1.09007 * 109.46953 * 30.15920 * 15 14 13 38 38 H 1.09001 * 109.47059 * 150.15544 * 15 14 13 39 39 H 1.08001 * 120.00212 * 179.72143 * 16 5 4 40 40 H 1.08009 * 119.91612 * 180.30262 * 17 16 5 41 41 H 0.97001 * 120.00236 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2943 2.3690 0.0005 5 6 1.9336 3.6150 0.0011 6 6 1.1390 4.8500 0.0011 7 6 1.4925 5.8815 0.8012 8 6 2.5044 5.6886 1.8381 9 8 2.9433 4.5740 2.0611 10 6 2.9979 6.8420 2.6087 11 6 2.6011 8.1623 2.4754 12 6 3.3488 8.8701 3.4189 13 7 4.1165 8.0154 4.0460 14 7 3.9342 6.8236 3.6030 15 6 4.6275 5.6276 4.0877 16 6 3.3331 3.6803 -0.0048 17 6 4.0758 2.5219 0.0005 18 6 3.4408 1.2844 0.0004 19 8 4.1776 0.1462 0.0004 20 6 5.5129 0.2819 -0.1184 21 1 5.9570 1.2663 -0.1258 22 6 6.3172 -0.8429 -0.2313 23 7 7.6202 -0.7105 -0.3476 24 14 5.5489 -2.5457 -0.2180 25 1 5.2161 -2.9493 -1.6077 26 1 6.5095 -3.5175 0.3633 27 1 4.3104 -2.5235 0.6011 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2156 2.3140 0.0005 32 1 0.2724 4.9346 -0.6378 33 1 1.0271 6.8478 0.6740 34 1 1.8691 8.5597 1.7878 35 1 3.3012 9.9338 3.5996 36 1 5.5410 5.4787 3.5121 37 1 4.8785 5.7548 5.1409 38 1 3.9790 4.7593 3.9711 39 1 3.8289 4.6398 -0.0089 40 1 5.1547 2.5738 0.0009 41 1 8.1825 -1.4970 -0.4269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766038407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:56 Heat of formation + Delta-G solvation = 25.954030 kcal Electronic energy + Delta-G solvation = -27277.284484 eV Core-core repulsion = 23319.316548 eV Total energy + Delta-G solvation = -3957.967936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.44046 -41.44073 -40.27908 -39.37526 -37.72448 -34.74307 -34.41725 -33.92088 -32.22899 -31.19440 -30.14542 -28.11857 -27.88074 -27.30770 -25.65161 -23.65275 -23.17784 -22.61170 -21.27829 -20.10976 -19.81409 -19.30732 -18.38185 -17.79299 -17.25201 -17.14002 -16.70374 -16.49564 -16.33313 -15.98009 -15.60115 -15.41906 -15.17395 -14.98959 -14.75731 -14.69951 -14.42596 -14.27462 -13.94601 -13.80091 -13.78832 -13.33784 -13.14253 -12.84407 -12.78111 -12.60991 -12.11477 -12.08212 -11.89573 -11.75962 -11.47694 -10.99840 -10.74151 -10.35528 -10.22383 -9.96158 -9.46701 -8.53519 -8.47350 -6.20722 -0.52708 0.37298 0.64464 1.12728 1.27375 1.33089 1.51065 1.54663 1.73770 2.26903 2.38817 2.54117 2.74930 3.00512 3.03577 3.10352 3.64771 3.84651 4.01377 4.12276 4.14686 4.18016 4.28118 4.34418 4.36846 4.47070 4.53651 4.53886 4.56506 4.71773 4.71902 4.74903 4.90920 4.93846 5.06804 5.22432 5.43354 5.48669 5.57348 5.63692 5.73205 5.76516 5.81546 6.03697 6.58911 6.62774 6.81035 7.09778 7.58789 8.58052 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.003563 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.200150 B = 7855.971531 C = 9356.730863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.040 3.960 4 C -0.130 4.130 5 C -0.121 4.121 6 C 0.016 3.984 7 C -0.231 4.231 8 C 0.432 3.568 9 O -0.475 6.475 10 C -0.084 4.084 11 C -0.162 4.162 12 C -0.013 4.013 13 N -0.313 5.313 14 N -0.280 5.280 15 C 0.084 3.916 16 C -0.033 4.033 17 C -0.213 4.213 18 C 0.104 3.896 19 O -0.234 6.234 20 C -0.399 4.399 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.919 5.919 24 Si 0.967 3.033 25 H -0.265 1.265 26 H -0.264 1.264 27 H -0.269 1.269 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.168 0.832 32 H 0.181 0.819 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.219 0.781 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.598 17.276 2.781 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C -0.004 4.004 4 C -0.149 4.149 5 C -0.122 4.122 6 C -0.002 4.002 7 C -0.250 4.250 8 C 0.314 3.686 9 O -0.353 6.353 10 C -0.209 4.209 11 C -0.190 4.190 12 C -0.188 4.188 13 N -0.146 5.146 14 N -0.068 5.068 15 C -0.057 4.057 16 C -0.051 4.051 17 C -0.233 4.233 18 C 0.055 3.945 19 O -0.141 6.141 20 C -0.475 4.475 21 H 0.098 0.902 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.188 1.188 27 H -0.193 1.193 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.186 0.814 32 H 0.198 0.802 33 H 0.200 0.800 34 H 0.220 0.780 35 H 0.235 0.765 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.246 15.940 3.801 23.789 hybrid contribution 0.292 -0.590 -0.323 0.733 sum -16.954 15.350 3.478 23.133 Atomic orbital electron populations 1.23305 0.76790 1.05100 1.02308 1.86125 1.23229 1.26625 1.90093 1.18193 0.88325 0.86170 1.07756 1.21224 1.00300 0.89424 1.03930 1.18770 0.92310 0.93792 1.07313 1.22808 0.95190 0.88539 0.93688 1.23363 1.01657 1.02109 0.97874 1.20176 0.80585 0.85283 0.82547 1.90885 1.53532 1.26965 1.63916 1.22736 1.00316 0.98876 0.98982 1.22805 1.03853 0.89584 1.02710 1.24296 0.96371 1.01239 0.96855 1.73164 1.25097 0.90976 1.25388 1.45894 1.28884 1.06770 1.25273 1.22319 0.98078 0.83087 1.02167 1.20720 0.93320 0.95817 0.95245 1.20829 0.99968 0.91842 1.10635 1.19164 0.89357 0.86727 0.99285 1.83521 1.19143 1.28871 1.82556 1.20755 0.78721 0.96267 1.51760 0.90184 1.25214 0.94943 1.02856 0.95422 1.69694 1.04149 1.32782 1.49357 0.85269 0.78518 0.77761 0.79496 1.18942 1.18806 1.19321 0.91739 0.91025 0.87178 0.81446 0.80189 0.79968 0.78047 0.76471 0.90188 0.87381 0.88553 0.86904 0.87304 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.35 -13.82 10.28 -79.00 -0.81 -14.63 16 3 C 0.04 1.69 6.70 22.57 0.15 1.84 16 4 C -0.13 -4.06 8.78 22.66 0.20 -3.86 16 5 C -0.12 -3.63 4.55 -20.13 -0.09 -3.72 16 6 C 0.02 0.29 9.81 23.84 0.23 0.52 16 7 C -0.23 -3.85 9.56 23.64 0.23 -3.62 16 8 C 0.43 10.88 6.11 26.69 0.16 11.04 16 9 O -0.47 -15.99 10.49 -4.84 -0.05 -16.04 16 10 C -0.08 -1.99 6.95 40.83 0.28 -1.71 16 11 C -0.16 -2.65 10.48 22.68 0.24 -2.41 16 12 C -0.01 -0.23 12.03 85.18 1.02 0.80 16 13 N -0.31 -7.90 11.90 -57.14 -0.68 -8.58 16 14 N -0.28 -7.45 3.75 -355.88 -1.33 -8.79 16 15 C 0.08 2.12 10.82 127.77 1.38 3.50 16 16 C -0.03 -1.22 6.57 22.57 0.15 -1.07 16 17 C -0.21 -10.08 9.14 22.33 0.20 -9.87 16 18 C 0.10 5.29 6.67 22.82 0.15 5.45 16 19 O -0.23 -13.70 8.35 -6.12 -0.05 -13.76 16 20 C -0.40 -24.71 9.94 67.94 0.68 -24.04 16 21 H 0.08 5.17 5.41 -2.91 -0.02 5.16 16 22 C 0.01 0.87 5.50 84.86 0.47 1.34 16 23 N -0.92 -56.44 13.96 21.63 0.30 -56.14 16 24 Si 0.97 48.02 28.62 68.60 1.96 49.98 16 25 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 28 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 29 H 0.07 1.37 7.66 -2.39 -0.02 1.36 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.17 3.62 6.28 -2.91 -0.02 3.60 16 32 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.18 1.31 7.28 -2.91 -0.02 1.29 16 34 H 0.20 1.43 7.50 -2.91 -0.02 1.41 16 35 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.10 2.70 6.31 -2.39 -0.02 2.68 16 39 H 0.11 3.90 6.99 -2.91 -0.02 3.88 16 40 H 0.11 5.66 5.62 -2.91 -0.02 5.64 16 41 H 0.29 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -83.75 351.63 6.99 -76.77 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.08 Total: 15.44 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 6.57 Total: -24.25 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.71 Total: -73.51 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.91 Total: -44.43 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.96 Total: 49.98 kcal Total: -83.75 6.99 -76.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766038407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.720 kcal (2) G-P(sol) polarization free energy of solvation -83.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds