Wall clock time and date at job start Tue Mar 31 2020 15:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.09004 * 109.47360 * 305.58576 * 3 2 1 5 5 C 1.50703 * 109.47090 * 185.58709 * 3 2 1 6 6 H 1.08000 * 120.00110 * 245.17582 * 5 3 2 7 7 C 1.37883 * 119.99737 * 65.17544 * 5 3 2 8 8 N 1.31515 * 120.00100 * 5.56258 * 7 5 3 9 9 Si 1.86801 * 119.99831 * 185.55861 * 7 5 3 10 10 H 1.48496 * 109.47009 * 94.99910 * 9 7 5 11 11 H 1.48500 * 109.46910 * 215.00089 * 9 7 5 12 12 H 1.48500 * 109.47222 * 334.99721 * 9 7 5 13 13 O 1.45198 * 109.47489 * 65.58907 * 3 2 1 14 14 C 1.34719 * 117.00050 * 270.00231 * 13 3 2 15 15 O 1.21463 * 120.00017 * 359.97438 * 14 13 3 16 16 C 1.47780 * 120.00084 * 179.97438 * 14 13 3 17 17 C 1.39491 * 120.02737 * 180.02562 * 16 14 13 18 18 N 1.32035 * 119.95444 * 179.70348 * 17 16 14 19 19 C 1.32640 * 120.00904 * 0.54547 * 18 17 16 20 20 O 1.35469 * 119.97443 * 179.72869 * 19 18 17 21 21 C 1.35892 * 117.99831 * 5.03604 * 20 19 18 22 22 C 1.38750 * 120.05959 * 247.34959 * 21 20 19 23 23 C 1.38135 * 119.94224 * 180.02562 * 22 21 20 24 24 C 1.38274 * 120.05894 * 359.97438 * 23 22 21 25 25 C 1.38267 * 120.11409 * 0.28228 * 24 23 22 26 26 C 1.38146 * 120.05837 * 359.44109 * 25 24 23 27 27 C 1.39636 * 120.05386 * 359.44996 * 19 18 17 28 28 N 1.31524 * 120.04915 * 0.27850 * 27 19 18 29 29 H 1.08994 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46978 * 300.00068 * 1 2 3 31 31 H 1.09001 * 109.47332 * 59.99690 * 1 2 3 32 32 H 1.08996 * 109.47172 * 239.99811 * 2 1 3 33 33 H 1.09002 * 109.46866 * 119.99697 * 2 1 3 34 34 H 0.96994 * 119.99639 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.02484 * 359.95191 * 17 16 14 36 36 H 1.08008 * 120.02899 * 359.97438 * 22 21 20 37 37 H 1.07997 * 119.97133 * 180.02562 * 23 22 21 38 38 H 1.07995 * 119.94233 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.97157 * 179.72528 * 25 24 23 40 40 H 1.07998 * 120.03281 * 180.25439 * 26 25 24 41 41 H 1.08006 * 119.97784 * 180.25186 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5406 1.4447 -0.1383 6 1 4.1569 1.8104 0.6697 7 6 4.1269 0.9798 -1.2965 8 7 3.3772 0.6372 -2.3213 9 14 5.9859 0.8368 -1.4100 10 1 6.3977 -0.5479 -1.0662 11 1 6.4232 1.1543 -2.7932 12 1 6.6146 1.7904 -0.4610 13 8 1.6680 2.0875 1.2465 14 6 0.4807 2.7235 1.2756 15 8 -0.2242 2.7392 0.2865 16 6 0.0359 3.4020 2.5107 17 6 -1.1935 4.0602 2.5415 18 7 -1.5921 4.6610 3.6477 19 6 -0.8190 4.6477 4.7254 20 8 -1.2262 5.2691 5.8582 21 6 -2.4758 5.8027 5.8792 22 6 -2.6430 7.1786 5.9429 23 6 -3.9143 7.7184 5.9647 24 6 -5.0198 6.8889 5.9225 25 6 -4.8560 5.5172 5.8643 26 6 -3.5868 4.9724 5.8365 27 6 0.4118 3.9889 4.6950 28 7 0.8086 3.3851 3.5960 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7896 0.3105 -3.1361 35 1 -1.8208 4.0750 1.6625 36 1 -1.7798 7.8270 5.9763 37 1 -4.0450 8.7893 6.0138 38 1 -6.0129 7.3129 5.9400 39 1 -5.7210 4.8712 5.8359 40 1 -3.4593 3.9012 5.7869 41 1 1.0385 3.9754 5.5745 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:56 Heat of formation + Delta-G solvation = -36.641564 kcal Electronic energy + Delta-G solvation = -26581.235293 eV Core-core repulsion = 22620.553008 eV Total energy + Delta-G solvation = -3960.682285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -41.82510 -40.33437 -39.31295 -38.03683 -35.89204 -34.47909 -33.42653 -31.81817 -31.41128 -31.33100 -30.11392 -27.37611 -25.74284 -24.96474 -23.29702 -23.08558 -22.69051 -21.42779 -19.81383 -19.34871 -18.44555 -17.55032 -17.10315 -16.65150 -16.44618 -16.14039 -15.67730 -15.57626 -15.02341 -14.71874 -14.62356 -14.41901 -13.93770 -13.84532 -13.26129 -13.05143 -12.87287 -12.73261 -12.17051 -12.06974 -11.85726 -11.59360 -11.51524 -11.33289 -11.22877 -11.19722 -10.98602 -10.66490 -10.29966 -10.15887 -9.82524 -9.45125 -9.41175 -9.36180 -9.31127 -8.88657 -8.84062 -8.47042 -6.19639 -4.24296 0.23257 0.71837 0.83659 0.97828 2.43589 2.76140 3.22702 3.25871 3.32571 3.39275 3.44595 3.68770 3.72870 4.04992 4.19960 4.35984 4.50563 4.52247 4.71283 4.85513 4.98021 5.07238 5.13830 5.14405 5.32577 5.50367 5.57771 5.84852 5.96015 5.98341 6.08978 6.16827 6.23556 6.35687 6.38072 6.78144 6.84159 6.89815 6.96562 7.10586 7.12910 7.41777 7.57426 7.65839 7.82989 8.10331 8.52720 8.87758 9.40128 10.89149 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002385 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.235835 B =11735.246583 C =12250.225124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.217 3.783 4 H 0.055 0.945 5 C -0.521 4.521 6 H 0.071 0.929 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.328 6.328 14 C 0.517 3.483 15 O -0.503 6.503 16 C 0.017 3.983 17 C 0.154 3.846 18 N -0.488 5.488 19 C 0.283 3.717 20 O -0.235 6.235 21 C 0.087 3.913 22 C -0.114 4.114 23 C -0.107 4.107 24 C -0.117 4.117 25 C -0.105 4.105 26 C -0.114 4.114 27 C 0.050 3.950 28 N -0.347 5.347 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.190 0.810 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 10.639 16.943 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.165 3.835 4 H 0.073 0.927 5 C -0.559 4.559 6 H 0.089 0.911 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 O -0.242 6.242 14 C 0.359 3.641 15 O -0.392 6.392 16 C -0.121 4.121 17 C -0.004 4.004 18 N -0.216 5.216 19 C 0.101 3.899 20 O -0.139 6.139 21 C 0.045 3.955 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.117 4.117 28 N -0.064 5.064 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.207 0.793 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.874 10.548 16.618 24.671 hybrid contribution 0.738 -0.144 -0.298 0.809 sum -14.136 10.403 16.320 23.967 Atomic orbital electron populations 1.21869 0.98171 0.99237 1.00857 1.21941 0.92880 0.99268 1.02645 1.20820 0.95577 0.88772 0.78336 0.92743 1.21017 0.89464 1.43484 1.01941 0.91130 1.24895 0.99163 0.95030 0.94766 1.69963 1.35476 1.43314 1.03707 0.86293 0.83996 0.78616 0.77465 1.20377 1.21026 1.19536 1.86661 1.32396 1.61370 1.43757 1.20105 0.81769 0.76919 0.85318 1.90825 1.55234 1.58703 1.34450 1.21435 0.94239 1.02550 0.93875 1.23588 0.93161 0.88296 0.95384 1.68298 1.33494 1.20234 0.99566 1.21549 0.91906 0.90479 0.85928 1.84633 1.30890 1.67356 1.30976 1.18625 0.82319 0.91789 1.02768 1.21114 0.98517 0.92904 1.00702 1.21029 0.91577 1.00191 0.99727 1.21259 0.99105 0.93618 0.99537 1.21036 0.96570 0.95360 0.99376 1.21321 0.92245 1.00067 0.99639 1.23140 0.93366 0.96612 0.98541 1.68668 1.29752 1.10447 0.97556 0.94630 0.94941 0.92547 0.88664 0.93569 0.92405 0.79314 0.85075 0.85135 0.85491 0.85301 0.85674 0.79659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.57 37.16 0.32 -2.76 16 2 C -0.13 -3.15 5.53 -26.73 -0.15 -3.30 16 3 C 0.22 5.74 2.12 -27.88 -0.06 5.68 16 4 H 0.05 1.58 7.14 -51.93 -0.37 1.21 16 5 C -0.52 -14.58 8.83 -34.44 -0.30 -14.89 16 6 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 7 C 0.06 1.75 5.22 -17.82 -0.09 1.66 16 8 N -0.89 -25.04 11.95 55.43 0.66 -24.38 16 9 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 13 O -0.33 -7.91 9.64 -40.55 -0.39 -8.31 16 14 C 0.52 10.90 6.42 34.63 0.22 11.12 16 15 O -0.50 -11.10 13.52 -19.24 -0.26 -11.36 16 16 C 0.02 0.29 6.74 -82.89 -0.56 -0.27 16 17 C 0.15 2.21 10.76 -17.00 -0.18 2.03 16 18 N -0.49 -6.56 9.05 -12.73 -0.12 -6.67 16 19 C 0.28 3.54 7.32 -16.68 -0.12 3.42 16 20 O -0.24 -2.68 9.98 -2.27 -0.02 -2.70 16 21 C 0.09 0.92 5.35 -39.20 -0.21 0.71 16 22 C -0.11 -1.02 9.99 -39.43 -0.39 -1.42 16 23 C -0.11 -0.78 10.04 -39.61 -0.40 -1.18 16 24 C -0.12 -0.82 10.04 -39.56 -0.40 -1.22 16 25 C -0.11 -0.83 10.04 -39.60 -0.40 -1.23 16 26 C -0.11 -1.11 9.22 -39.42 -0.36 -1.47 16 27 C 0.05 0.63 11.18 -17.16 -0.19 0.44 16 28 N -0.35 -5.67 10.27 -9.49 -0.10 -5.76 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.67 6.05 -51.93 -0.31 0.35 16 31 H 0.06 1.25 7.82 -51.93 -0.41 0.84 16 32 H 0.10 2.49 6.61 -51.93 -0.34 2.15 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.19 2.42 7.64 -52.49 -0.40 2.02 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.19 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 358.66 15.07 5.41 5.41 Total: -1.00 -31.26 358.66 -7.88 -39.14 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.76 Total: 1.23 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -3.28 Total: -2.67 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.45 Total: -36.82 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.67 Total: -22.36 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.26 -7.88 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.501 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds