Wall clock time and date at job start Tue Mar 31 2020 15:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47149 * 2 1 4 4 H 1.09004 * 109.47360 * 305.58576 * 3 2 1 5 5 C 1.50703 * 109.47090 * 185.58709 * 3 2 1 6 6 H 1.08000 * 120.00110 * 245.17582 * 5 3 2 7 7 C 1.37883 * 119.99737 * 65.17544 * 5 3 2 8 8 N 1.31515 * 120.00100 * 5.56258 * 7 5 3 9 9 Si 1.86801 * 119.99831 * 185.55861 * 7 5 3 10 10 H 1.48496 * 109.47009 * 94.99910 * 9 7 5 11 11 H 1.48500 * 109.46910 * 215.00089 * 9 7 5 12 12 H 1.48500 * 109.47222 * 334.99721 * 9 7 5 13 13 O 1.45198 * 109.47489 * 65.58907 * 3 2 1 14 14 C 1.34719 * 117.00050 * 270.00231 * 13 3 2 15 15 O 1.21463 * 120.00017 * 359.97438 * 14 13 3 16 16 C 1.47780 * 120.00084 * 179.97438 * 14 13 3 17 17 C 1.39491 * 120.02737 * 180.02562 * 16 14 13 18 18 N 1.32035 * 119.95444 * 179.70348 * 17 16 14 19 19 C 1.32640 * 120.00904 * 0.54547 * 18 17 16 20 20 O 1.35469 * 119.97443 * 179.72869 * 19 18 17 21 21 C 1.35892 * 117.99831 * 5.03604 * 20 19 18 22 22 C 1.38750 * 120.05959 * 247.34959 * 21 20 19 23 23 C 1.38135 * 119.94224 * 180.02562 * 22 21 20 24 24 C 1.38274 * 120.05894 * 359.97438 * 23 22 21 25 25 C 1.38267 * 120.11409 * 0.28228 * 24 23 22 26 26 C 1.38146 * 120.05837 * 359.44109 * 25 24 23 27 27 C 1.39636 * 120.05386 * 359.44996 * 19 18 17 28 28 N 1.31524 * 120.04915 * 0.27850 * 27 19 18 29 29 H 1.08994 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46978 * 300.00068 * 1 2 3 31 31 H 1.09001 * 109.47332 * 59.99690 * 1 2 3 32 32 H 1.08996 * 109.47172 * 239.99811 * 2 1 3 33 33 H 1.09002 * 109.46866 * 119.99697 * 2 1 3 34 34 H 0.96994 * 119.99639 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.02484 * 359.95191 * 17 16 14 36 36 H 1.08008 * 120.02899 * 359.97438 * 22 21 20 37 37 H 1.07997 * 119.97133 * 180.02562 * 23 22 21 38 38 H 1.07995 * 119.94233 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.97157 * 179.72528 * 25 24 23 40 40 H 1.07998 * 120.03281 * 180.25439 * 26 25 24 41 41 H 1.08006 * 119.97784 * 180.25186 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5406 1.4447 -0.1383 6 1 4.1569 1.8104 0.6697 7 6 4.1269 0.9798 -1.2965 8 7 3.3772 0.6372 -2.3213 9 14 5.9859 0.8368 -1.4100 10 1 6.3977 -0.5479 -1.0662 11 1 6.4232 1.1543 -2.7932 12 1 6.6146 1.7904 -0.4610 13 8 1.6680 2.0875 1.2465 14 6 0.4807 2.7235 1.2756 15 8 -0.2242 2.7392 0.2865 16 6 0.0359 3.4020 2.5107 17 6 -1.1935 4.0602 2.5415 18 7 -1.5921 4.6610 3.6477 19 6 -0.8190 4.6477 4.7254 20 8 -1.2262 5.2691 5.8582 21 6 -2.4758 5.8027 5.8792 22 6 -2.6430 7.1786 5.9429 23 6 -3.9143 7.7184 5.9647 24 6 -5.0198 6.8889 5.9225 25 6 -4.8560 5.5172 5.8643 26 6 -3.5868 4.9724 5.8365 27 6 0.4118 3.9889 4.6950 28 7 0.8086 3.3851 3.5960 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7896 0.3105 -3.1361 35 1 -1.8208 4.0750 1.6625 36 1 -1.7798 7.8270 5.9763 37 1 -4.0450 8.7893 6.0138 38 1 -6.0129 7.3129 5.9400 39 1 -5.7210 4.8712 5.8359 40 1 -3.4593 3.9012 5.7869 41 1 1.0385 3.9754 5.5745 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:54 Heat of formation + Delta-G solvation = -55.517831 kcal Electronic energy + Delta-G solvation = -26582.053830 eV Core-core repulsion = 22620.553008 eV Total energy + Delta-G solvation = -3961.500821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.88948 -41.51243 -40.71546 -38.81512 -37.70014 -35.72627 -35.30545 -33.48400 -32.73740 -31.98180 -30.92833 -29.34943 -26.95401 -26.13998 -25.13338 -23.78482 -23.61734 -22.87801 -21.62744 -20.27367 -19.71395 -19.13416 -18.29965 -17.96710 -17.69095 -17.49412 -17.13781 -16.70169 -16.44921 -16.05260 -15.79771 -15.35296 -15.04308 -14.82396 -14.64123 -14.43935 -14.28388 -13.81158 -13.50197 -13.43593 -13.29206 -13.14407 -12.98840 -12.83584 -12.63536 -12.54453 -12.54179 -12.15064 -11.93817 -11.88976 -11.71323 -11.41223 -10.86352 -10.60757 -10.55393 -10.28828 -9.98358 -9.68063 -8.29256 -6.43239 -0.94567 -0.27182 0.02527 0.35882 1.30440 1.41238 1.43387 1.49412 1.56268 1.80856 2.38650 2.42453 2.67633 2.78378 2.90604 3.02087 3.09965 3.70401 3.87661 3.90282 3.94534 4.20583 4.33088 4.35213 4.36178 4.37473 4.44408 4.50681 4.53901 4.81361 4.88298 5.00226 5.06272 5.18707 5.28687 5.30648 5.37748 5.50085 5.50525 5.61249 5.67754 5.72692 5.85611 6.05880 6.10136 6.33952 6.59414 6.88297 7.26715 8.79836 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002385 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.235835 B =11735.246583 C =12250.225124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.221 3.779 4 H 0.018 0.982 5 C -0.549 4.549 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.978 3.022 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.267 1.267 13 O -0.342 6.342 14 C 0.515 3.485 15 O -0.521 6.521 16 C -0.011 4.011 17 C 0.170 3.830 18 N -0.490 5.490 19 C 0.299 3.701 20 O -0.229 6.229 21 C 0.054 3.946 22 C -0.123 4.123 23 C -0.108 4.108 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.128 4.128 27 C 0.063 3.937 28 N -0.374 5.374 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.271 0.729 35 H 0.201 0.799 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 11.749 18.802 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.168 3.832 4 H 0.035 0.965 5 C -0.587 4.587 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.801 3.199 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.192 1.192 13 O -0.257 6.257 14 C 0.359 3.641 15 O -0.412 6.412 16 C -0.147 4.147 17 C 0.012 3.988 18 N -0.219 5.219 19 C 0.116 3.884 20 O -0.131 6.131 21 C 0.012 3.988 22 C -0.142 4.142 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.147 4.147 27 C -0.106 4.106 28 N -0.092 5.092 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.217 0.783 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.138 0.862 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.870 11.664 18.477 27.005 hybrid contribution 0.859 -0.317 -0.689 1.146 sum -15.011 11.346 17.788 25.893 Atomic orbital electron populations 1.21725 0.95900 1.00933 1.00293 1.21784 0.94873 0.97752 1.01643 1.20529 0.94922 0.89494 0.78244 0.96451 1.21277 0.90445 1.44593 1.02381 0.91900 1.25771 1.04038 0.94128 0.94061 1.70070 1.37517 1.43384 1.04171 0.85246 0.77941 0.79015 0.77688 1.19218 1.20218 1.19156 1.86634 1.34391 1.62264 1.42430 1.20713 0.80496 0.76244 0.86695 1.90795 1.55338 1.59373 1.35649 1.20927 0.95815 1.04971 0.92945 1.23623 0.91971 0.87168 0.96009 1.68397 1.33570 1.20348 0.99535 1.21768 0.91553 0.89144 0.85964 1.84666 1.31710 1.66764 1.29972 1.18940 0.81911 0.92740 1.05207 1.21351 0.99805 0.92358 1.00648 1.21410 0.90896 1.01725 0.98514 1.21672 1.00473 0.93236 0.97650 1.21350 0.96443 0.96336 0.98725 1.21422 0.92979 0.99890 1.00420 1.23645 0.93600 0.95075 0.98269 1.68553 1.30531 1.11754 0.98314 0.91690 0.94625 0.93927 0.90748 0.93221 0.91991 0.78271 0.84283 0.82475 0.82619 0.83342 0.86224 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.57 71.98 0.62 -5.06 16 2 C -0.12 -6.14 5.53 30.59 0.17 -5.97 16 3 C 0.22 12.21 2.12 29.85 0.06 12.27 16 4 H 0.02 1.08 7.14 -2.38 -0.02 1.07 16 5 C -0.55 -31.78 8.83 25.60 0.23 -31.55 16 6 H 0.06 3.63 7.82 -2.91 -0.02 3.61 16 7 C 0.02 1.13 5.22 84.66 0.44 1.57 16 8 N -0.91 -52.79 11.95 21.45 0.26 -52.53 16 9 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 13 O -0.34 -17.25 9.64 -56.29 -0.54 -17.79 16 14 C 0.52 22.56 6.42 70.35 0.45 23.02 16 15 O -0.52 -24.02 13.52 19.96 0.27 -23.75 16 16 C -0.01 -0.38 6.74 41.76 0.28 -0.10 16 17 C 0.17 4.85 10.76 84.96 0.91 5.77 16 18 N -0.49 -12.72 9.05 -306.98 -2.78 -15.49 16 19 C 0.30 7.09 7.32 84.91 0.62 7.71 16 20 O -0.23 -4.86 9.98 -31.03 -0.31 -5.17 16 21 C 0.05 1.06 5.35 22.52 0.12 1.18 16 22 C -0.12 -1.97 9.99 22.37 0.22 -1.75 16 23 C -0.11 -1.26 10.04 22.25 0.22 -1.03 16 24 C -0.11 -1.21 10.04 22.29 0.22 -0.99 16 25 C -0.11 -1.48 10.04 22.25 0.22 -1.26 16 26 C -0.13 -2.33 9.22 22.37 0.21 -2.12 16 27 C 0.06 1.49 11.18 85.08 0.95 2.44 16 28 N -0.37 -12.19 10.27 -183.95 -1.89 -14.08 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.03 1.49 6.05 -2.38 -0.01 1.47 16 31 H 0.04 1.93 7.82 -2.39 -0.02 1.91 16 32 H 0.07 4.02 6.61 -2.39 -0.02 4.01 16 33 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.20 5.11 7.64 -2.91 -0.02 5.09 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.22 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -69.85 358.66 4.05 -65.80 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.06 Total: 13.37 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.96 Total: 4.11 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -4.41 Total: -82.11 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.58 Total: -46.71 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.85 4.05 -65.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.282 kcal (2) G-P(sol) polarization free energy of solvation -69.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds