Wall clock time and date at job start Tue Mar 31 2020 15:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47338 * 2 1 4 4 H 1.09001 * 109.47029 * 54.99535 * 3 2 1 5 5 C 1.50700 * 109.47126 * 174.99640 * 3 2 1 6 6 H 1.07995 * 119.99897 * 120.00191 * 5 3 2 7 7 C 1.37877 * 120.00042 * 300.00028 * 5 3 2 8 8 N 1.31513 * 119.99886 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00049 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46938 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47130 * 119.99867 * 9 7 5 12 12 H 1.48499 * 109.46955 * 239.99789 * 9 7 5 13 13 O 1.45200 * 109.46932 * 294.99752 * 3 2 1 14 14 C 1.34716 * 117.00201 * 90.00082 * 13 3 2 15 15 O 1.21475 * 119.99888 * 359.97438 * 14 13 3 16 16 C 1.47777 * 120.00429 * 179.97438 * 14 13 3 17 17 C 1.39483 * 120.03354 * 180.02562 * 16 14 13 18 18 N 1.32026 * 119.95713 * 179.74554 * 17 16 14 19 19 C 1.32644 * 120.01262 * 0.48826 * 18 17 16 20 20 O 1.35464 * 119.97524 * 179.76899 * 19 18 17 21 21 C 1.35896 * 117.99898 * 5.54083 * 20 19 18 22 22 C 1.38752 * 120.05825 * 250.10509 * 21 20 19 23 23 C 1.38142 * 119.93963 * 180.02562 * 22 21 20 24 24 C 1.38264 * 120.05810 * 359.97438 * 23 22 21 25 25 C 1.38271 * 120.11939 * 0.27450 * 24 23 22 26 26 C 1.38146 * 120.05512 * 359.45540 * 25 24 23 27 27 C 1.39634 * 120.05085 * 359.48707 * 19 18 17 28 28 N 1.31532 * 120.04267 * 0.27578 * 27 19 18 29 29 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47297 * 300.00760 * 1 2 3 31 31 H 1.09004 * 109.46419 * 60.00257 * 1 2 3 32 32 H 1.08997 * 109.47297 * 239.99240 * 2 1 3 33 33 H 1.09004 * 109.46419 * 119.99743 * 2 1 3 34 34 H 0.97008 * 120.00046 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.01926 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.02755 * 0.02562 * 22 21 20 37 37 H 1.07998 * 119.96815 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.94306 * 180.02562 * 24 23 22 39 39 H 1.08002 * 119.97618 * 179.71968 * 25 24 23 40 40 H 1.08001 * 120.02875 * 180.25774 * 26 25 24 41 41 H 1.08000 * 119.97409 * 180.26352 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6521 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3374 2.1734 9 14 6.0049 0.8811 1.3820 10 1 6.5988 1.5461 0.1945 11 1 6.3989 1.6166 2.6105 12 1 6.4969 -0.5176 1.4633 13 8 1.6560 2.0916 -1.2407 14 6 0.4686 2.7277 -1.2562 15 8 -0.2272 2.7394 -0.2604 16 6 0.0123 3.4113 -2.4843 17 6 -1.2167 4.0706 -2.5008 18 7 -1.6206 4.6851 -3.5973 19 6 -0.8623 4.6672 -4.6855 20 8 -1.2795 5.2940 -5.8115 21 6 -2.4241 6.0239 -5.7486 22 6 -3.5674 5.5809 -6.3981 23 6 -4.7295 6.3250 -6.3330 24 6 -4.7541 7.5100 -5.6210 25 6 -3.6147 7.9563 -4.9771 26 6 -2.4516 7.2132 -5.0344 27 6 0.3684 4.0078 -4.6693 28 7 0.7750 3.3989 -3.5766 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.8291 -0.0611 2.9501 35 1 -1.8359 4.0814 -1.6160 36 1 -3.5488 4.6552 -6.9541 37 1 -5.6198 5.9804 -6.8380 38 1 -5.6637 8.0900 -5.5709 39 1 -3.6353 8.8845 -4.4253 40 1 -1.5631 7.5601 -4.5278 41 1 0.9868 3.9977 -5.5547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:08 Heat of formation + Delta-G solvation = -35.368770 kcal Electronic energy + Delta-G solvation = -26581.804009 eV Core-core repulsion = 22621.176917 eV Total energy + Delta-G solvation = -3960.627093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81908 -40.33298 -39.31309 -38.03663 -35.89289 -34.47767 -33.46470 -31.80692 -31.38233 -31.28570 -30.11148 -27.37920 -25.73997 -24.95938 -23.29672 -23.09815 -22.68943 -21.40817 -19.78136 -19.34597 -18.44486 -17.54635 -17.10826 -16.64990 -16.46130 -16.14248 -15.70390 -15.53233 -15.01778 -14.75178 -14.60466 -14.42205 -13.92350 -13.84972 -13.29867 -12.93736 -12.84110 -12.81472 -12.14688 -12.05793 -11.86027 -11.57416 -11.47487 -11.36686 -11.19873 -11.19097 -10.97499 -10.66349 -10.30243 -10.15160 -9.77300 -9.44277 -9.40555 -9.36464 -9.29397 -8.90960 -8.81451 -8.46174 -6.18674 -4.25094 0.23779 0.71008 0.83432 0.97489 2.44298 2.76205 3.22441 3.24914 3.32425 3.39821 3.44656 3.68934 3.72963 4.05086 4.20031 4.35576 4.50439 4.52028 4.70919 4.85768 4.97771 5.07473 5.13136 5.14383 5.32676 5.51087 5.57452 5.85251 5.96004 5.98181 6.08610 6.20981 6.27943 6.35676 6.42424 6.78889 6.85999 6.92134 6.96762 7.13981 7.17385 7.42274 7.60004 7.71117 7.88125 8.13649 8.53047 8.86553 9.39802 10.88262 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.026374 B = 0.002373 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.409550 B =11796.476771 C =12164.872296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.219 3.781 4 H 0.049 0.951 5 C -0.519 4.519 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.327 6.327 14 C 0.518 3.482 15 O -0.503 6.503 16 C 0.017 3.983 17 C 0.154 3.846 18 N -0.488 5.488 19 C 0.283 3.717 20 O -0.236 6.236 21 C 0.087 3.913 22 C -0.113 4.113 23 C -0.107 4.107 24 C -0.116 4.116 25 C -0.106 4.106 26 C -0.114 4.114 27 C 0.050 3.950 28 N -0.347 5.347 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.190 0.810 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 11.941 -16.202 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.166 3.834 4 H 0.067 0.933 5 C -0.557 4.557 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.242 6.242 14 C 0.359 3.641 15 O -0.393 6.393 16 C -0.121 4.121 17 C -0.004 4.004 18 N -0.216 5.216 19 C 0.102 3.898 20 O -0.139 6.139 21 C 0.045 3.955 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.133 4.133 27 C -0.117 4.117 28 N -0.064 5.064 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.207 0.793 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.593 11.808 -15.901 24.601 hybrid contribution 0.734 -0.042 0.302 0.795 sum -13.859 11.766 -15.599 23.955 Atomic orbital electron populations 1.21868 0.98414 0.99157 1.00623 1.22033 0.92605 0.99220 1.03556 1.20824 0.95321 0.88874 0.78346 0.93294 1.21074 0.89501 1.38830 1.06252 0.91098 1.24881 0.99281 0.94758 0.95042 1.69897 1.35298 1.37949 1.09488 0.86221 0.83858 0.77883 0.78215 1.19427 1.20780 1.20716 1.86662 1.32340 1.61259 1.43901 1.20104 0.81743 0.76931 0.85320 1.90826 1.55761 1.58856 1.33851 1.21430 0.94477 1.02440 0.93761 1.23581 0.93047 0.88208 0.95600 1.68294 1.32970 1.20664 0.99657 1.21558 0.91454 0.90599 0.86230 1.84633 1.39304 1.60224 1.29754 1.18613 0.85143 0.91173 1.00567 1.21141 0.90814 1.00412 1.00815 1.21030 0.97380 0.94948 0.99192 1.21261 0.98515 0.96504 0.97164 1.21042 0.92233 0.99863 0.99225 1.21334 0.99221 0.94333 0.98402 1.23142 0.92701 0.97179 0.98650 1.68666 1.30017 1.10194 0.97553 0.94675 0.92680 0.95167 0.93798 0.87159 0.92434 0.79327 0.85116 0.85149 0.85483 0.85278 0.85621 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.56 37.16 0.32 -2.79 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.79 2.25 -27.88 -0.06 5.72 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.51 8.90 -34.44 -0.31 -14.81 16 6 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.87 11.29 55.43 0.63 -24.24 16 9 Si 0.91 21.06 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 O -0.33 -7.93 9.63 -40.53 -0.39 -8.32 16 14 C 0.52 10.92 6.40 34.63 0.22 11.14 16 15 O -0.50 -11.11 13.52 -19.25 -0.26 -11.37 16 16 C 0.02 0.29 6.74 -82.90 -0.56 -0.27 16 17 C 0.15 2.21 10.76 -17.00 -0.18 2.03 16 18 N -0.49 -6.57 9.17 -12.74 -0.12 -6.69 16 19 C 0.28 3.55 7.34 -16.68 -0.12 3.43 16 20 O -0.24 -2.68 9.98 -2.26 -0.02 -2.71 16 21 C 0.09 0.92 5.26 -39.20 -0.21 0.72 16 22 C -0.11 -1.02 9.99 -39.43 -0.39 -1.41 16 23 C -0.11 -0.79 10.04 -39.61 -0.40 -1.18 16 24 C -0.12 -0.82 10.04 -39.56 -0.40 -1.21 16 25 C -0.11 -0.83 10.04 -39.60 -0.40 -1.23 16 26 C -0.11 -1.11 9.40 -39.42 -0.37 -1.48 16 27 C 0.05 0.63 11.18 -17.16 -0.19 0.44 16 28 N -0.35 -5.69 10.27 -9.50 -0.10 -5.78 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 31 H 0.03 0.63 6.06 -51.93 -0.31 0.32 16 32 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.19 2.42 7.64 -52.49 -0.40 2.02 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -31.13 357.75 -7.91 -39.04 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.73 Total: 1.47 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.29 Total: -2.82 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.41 Total: -36.72 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.67 Total: -22.40 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.13 -7.91 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.675 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds