Wall clock time and date at job start Tue Mar 31 2020 15:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47338 * 2 1 4 4 H 1.09001 * 109.47029 * 54.99535 * 3 2 1 5 5 C 1.50700 * 109.47126 * 174.99640 * 3 2 1 6 6 H 1.07995 * 119.99897 * 120.00191 * 5 3 2 7 7 C 1.37877 * 120.00042 * 300.00028 * 5 3 2 8 8 N 1.31513 * 119.99886 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00049 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46938 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47130 * 119.99867 * 9 7 5 12 12 H 1.48499 * 109.46955 * 239.99789 * 9 7 5 13 13 O 1.45200 * 109.46932 * 294.99752 * 3 2 1 14 14 C 1.34716 * 117.00201 * 90.00082 * 13 3 2 15 15 O 1.21475 * 119.99888 * 359.97438 * 14 13 3 16 16 C 1.47777 * 120.00429 * 179.97438 * 14 13 3 17 17 C 1.39483 * 120.03354 * 180.02562 * 16 14 13 18 18 N 1.32026 * 119.95713 * 179.74554 * 17 16 14 19 19 C 1.32644 * 120.01262 * 0.48826 * 18 17 16 20 20 O 1.35464 * 119.97524 * 179.76899 * 19 18 17 21 21 C 1.35896 * 117.99898 * 5.54083 * 20 19 18 22 22 C 1.38752 * 120.05825 * 250.10509 * 21 20 19 23 23 C 1.38142 * 119.93963 * 180.02562 * 22 21 20 24 24 C 1.38264 * 120.05810 * 359.97438 * 23 22 21 25 25 C 1.38271 * 120.11939 * 0.27450 * 24 23 22 26 26 C 1.38146 * 120.05512 * 359.45540 * 25 24 23 27 27 C 1.39634 * 120.05085 * 359.48707 * 19 18 17 28 28 N 1.31532 * 120.04267 * 0.27578 * 27 19 18 29 29 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47297 * 300.00760 * 1 2 3 31 31 H 1.09004 * 109.46419 * 60.00257 * 1 2 3 32 32 H 1.08997 * 109.47297 * 239.99240 * 2 1 3 33 33 H 1.09004 * 109.46419 * 119.99743 * 2 1 3 34 34 H 0.97008 * 120.00046 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.01926 * 359.97438 * 17 16 14 36 36 H 1.07999 * 120.02755 * 0.02562 * 22 21 20 37 37 H 1.07998 * 119.96815 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.94306 * 180.02562 * 24 23 22 39 39 H 1.08002 * 119.97618 * 179.71968 * 25 24 23 40 40 H 1.08001 * 120.02875 * 180.25774 * 26 25 24 41 41 H 1.08000 * 119.97409 * 180.26352 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6521 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3374 2.1734 9 14 6.0049 0.8811 1.3820 10 1 6.5988 1.5461 0.1945 11 1 6.3989 1.6166 2.6105 12 1 6.4969 -0.5176 1.4633 13 8 1.6560 2.0916 -1.2407 14 6 0.4686 2.7277 -1.2562 15 8 -0.2272 2.7394 -0.2604 16 6 0.0123 3.4113 -2.4843 17 6 -1.2167 4.0706 -2.5008 18 7 -1.6206 4.6851 -3.5973 19 6 -0.8623 4.6672 -4.6855 20 8 -1.2795 5.2940 -5.8115 21 6 -2.4241 6.0239 -5.7486 22 6 -3.5674 5.5809 -6.3981 23 6 -4.7295 6.3250 -6.3330 24 6 -4.7541 7.5100 -5.6210 25 6 -3.6147 7.9563 -4.9771 26 6 -2.4516 7.2132 -5.0344 27 6 0.3684 4.0078 -4.6693 28 7 0.7750 3.3989 -3.5766 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.8291 -0.0611 2.9501 35 1 -1.8359 4.0814 -1.6160 36 1 -3.5488 4.6552 -6.9541 37 1 -5.6198 5.9804 -6.8380 38 1 -5.6637 8.0900 -5.5709 39 1 -3.6353 8.8845 -4.4253 40 1 -1.5631 7.5601 -4.5278 41 1 0.9868 3.9977 -5.5547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:03 Heat of formation + Delta-G solvation = -54.101974 kcal Electronic energy + Delta-G solvation = -26582.616342 eV Core-core repulsion = 22621.176917 eV Total energy + Delta-G solvation = -3961.439425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.126 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -42.88671 -41.51199 -40.71764 -38.81664 -37.70529 -35.74343 -35.33117 -33.41046 -32.72969 -31.98646 -30.92848 -29.35780 -26.95260 -26.14001 -25.13962 -23.77992 -23.62560 -22.86552 -21.60804 -20.27504 -19.71497 -19.13664 -18.32076 -17.95993 -17.63496 -17.55885 -17.12960 -16.69377 -16.46385 -16.05168 -15.81503 -15.31927 -15.02369 -14.83087 -14.70782 -14.44075 -14.19635 -13.84842 -13.48241 -13.37864 -13.31524 -13.13378 -12.98765 -12.83361 -12.62921 -12.56542 -12.54587 -12.14336 -11.93914 -11.86701 -11.70769 -11.40681 -10.84045 -10.61687 -10.52819 -10.26910 -9.98742 -9.70851 -8.27392 -6.43366 -0.94457 -0.27176 0.01283 0.35544 1.30185 1.41295 1.42602 1.50032 1.57528 1.81116 2.38593 2.42467 2.67768 2.78023 2.90451 3.02218 3.10049 3.70476 3.87768 3.90164 3.94731 4.20266 4.32936 4.36312 4.37646 4.39080 4.44179 4.51181 4.54976 4.80991 4.88152 4.99886 5.07849 5.20296 5.30244 5.31920 5.37329 5.49759 5.50607 5.65847 5.67401 5.73583 5.90991 6.07830 6.10109 6.34002 6.58926 6.87878 7.26866 8.79636 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.026374 B = 0.002373 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.409550 B =11796.476771 C =12164.872296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.222 3.778 4 H 0.014 0.986 5 C -0.548 4.548 6 H 0.062 0.938 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.271 1.271 13 O -0.342 6.342 14 C 0.515 3.485 15 O -0.521 6.521 16 C -0.011 4.011 17 C 0.170 3.830 18 N -0.490 5.490 19 C 0.299 3.701 20 O -0.229 6.229 21 C 0.054 3.946 22 C -0.122 4.122 23 C -0.108 4.108 24 C -0.112 4.112 25 C -0.111 4.111 26 C -0.129 4.129 27 C 0.062 3.938 28 N -0.375 5.375 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.271 0.729 35 H 0.201 0.799 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.728 12.896 -18.018 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.032 0.968 5 C -0.586 4.586 6 H 0.080 0.920 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.803 3.197 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.196 1.196 13 O -0.257 6.257 14 C 0.359 3.641 15 O -0.412 6.412 16 C -0.147 4.147 17 C 0.012 3.988 18 N -0.219 5.219 19 C 0.116 3.884 20 O -0.132 6.132 21 C 0.012 3.988 22 C -0.141 4.141 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.148 4.148 27 C -0.106 4.106 28 N -0.092 5.092 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.217 0.783 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.138 0.862 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -15.773 12.770 -17.712 26.936 hybrid contribution 0.915 -0.169 0.688 1.157 sum -14.858 12.600 -17.024 25.871 Atomic orbital electron populations 1.21721 0.96124 1.00784 1.00134 1.21875 0.94620 0.97887 1.02387 1.20531 0.94744 0.89472 0.78307 0.96775 1.21314 0.90439 1.39982 1.06846 0.91960 1.25758 1.04127 0.93861 0.94321 1.70003 1.37273 1.37892 1.09827 0.85181 0.77845 0.78359 0.78305 1.19103 1.20000 1.19573 1.86637 1.34344 1.62151 1.42597 1.20713 0.80472 0.76267 0.86689 1.90794 1.55848 1.59509 1.35028 1.20924 0.96044 1.04852 0.92856 1.23619 0.91860 0.87055 0.96229 1.68394 1.33074 1.20717 0.99666 1.21776 0.91115 0.89232 0.86271 1.84668 1.39955 1.59783 1.28757 1.18925 0.85435 0.91816 1.02603 1.21376 0.90875 1.01122 1.00700 1.21413 0.97628 0.94719 0.98785 1.21674 0.99192 0.96369 0.95713 1.21353 0.91862 1.00406 0.99265 1.21439 0.99942 0.94615 0.98802 1.23645 0.92946 0.95607 0.98417 1.68550 1.30836 1.11502 0.98305 0.91879 0.93883 0.94868 0.93833 0.89192 0.91953 0.78263 0.84306 0.82461 0.82602 0.83347 0.86195 0.76152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.56 71.98 0.62 -5.11 16 2 C -0.13 -6.61 5.49 30.59 0.17 -6.45 16 3 C 0.22 12.32 2.25 29.85 0.07 12.38 16 4 H 0.01 0.88 7.16 -2.39 -0.02 0.86 16 5 C -0.55 -31.73 8.90 25.60 0.23 -31.50 16 6 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -52.11 11.29 21.45 0.24 -51.87 16 9 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 O -0.34 -17.32 9.63 -56.26 -0.54 -17.86 16 14 C 0.52 22.60 6.40 70.35 0.45 23.05 16 15 O -0.52 -23.99 13.52 19.92 0.27 -23.72 16 16 C -0.01 -0.39 6.74 41.76 0.28 -0.11 16 17 C 0.17 4.86 10.76 84.96 0.91 5.78 16 18 N -0.49 -12.75 9.17 -307.00 -2.81 -15.56 16 19 C 0.30 7.11 7.34 84.91 0.62 7.73 16 20 O -0.23 -4.88 9.98 -31.02 -0.31 -5.19 16 21 C 0.05 1.07 5.26 22.52 0.12 1.18 16 22 C -0.12 -1.95 9.99 22.37 0.22 -1.73 16 23 C -0.11 -1.25 10.04 22.25 0.22 -1.02 16 24 C -0.11 -1.20 10.04 22.28 0.22 -0.98 16 25 C -0.11 -1.49 10.04 22.26 0.22 -1.27 16 26 C -0.13 -2.35 9.40 22.37 0.21 -2.14 16 27 C 0.06 1.49 11.18 85.08 0.95 2.44 16 28 N -0.37 -12.26 10.27 -183.96 -1.89 -14.15 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.04 1.96 7.79 -2.39 -0.02 1.95 16 31 H 0.03 1.41 6.06 -2.38 -0.01 1.39 16 32 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 4.96 5.95 -2.38 -0.01 4.94 16 34 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 35 H 0.20 5.11 7.64 -2.91 -0.02 5.09 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 38 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.22 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -69.44 357.75 4.02 -65.43 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.06 Total: 13.67 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.97 Total: 3.77 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -4.46 Total: -81.57 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.58 Total: -46.77 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.44 4.02 -65.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.324 kcal (2) G-P(sol) polarization free energy of solvation -69.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.80 seconds