Wall clock time and date at job start Tue Mar 31 2020 15:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47475 * 2 1 4 4 O 1.42908 * 109.47328 * 240.00148 * 2 1 3 5 5 C 1.53003 * 109.47001 * 120.00281 * 2 1 3 6 6 O 1.42904 * 109.47067 * 184.99600 * 5 2 1 7 7 N 1.41595 * 113.99918 * 179.97438 * 6 5 2 8 8 C 1.34773 * 119.99893 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00361 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99901 * 180.27938 * 8 7 6 11 11 C 1.40138 * 120.00081 * 175.35645 * 10 8 7 12 12 C 1.38688 * 120.07459 * 34.59721 * 11 10 8 13 13 C 1.38200 * 120.02195 * 179.72486 * 12 11 10 14 14 C 1.38549 * 120.17243 * 0.55031 * 13 12 11 15 15 F 1.35101 * 119.92670 * 179.74446 * 14 13 12 16 16 C 1.38350 * 120.14875 * 359.72481 * 14 13 12 17 17 C 1.38734 * 119.97931 * 0.02562 * 16 14 13 18 18 O 1.35777 * 120.08833 * 180.02562 * 17 16 14 19 19 C 1.34803 * 116.99839 * 5.43667 * 18 17 16 20 20 H 1.08003 * 120.00175 * 354.94414 * 19 18 17 21 21 C 1.38635 * 120.00104 * 174.95430 * 19 18 17 22 22 N 1.31578 * 119.99819 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46915 * 60.00009 * 23 21 19 25 25 H 1.48504 * 109.47412 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47244 * 300.00164 * 23 21 19 27 27 H 1.09003 * 109.47124 * 299.99999 * 1 2 3 28 28 H 1.09010 * 109.46745 * 59.99762 * 1 2 3 29 29 H 1.08995 * 109.47640 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47298 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47671 * 300.00332 * 3 2 1 32 32 H 1.09003 * 109.46944 * 59.99891 * 3 2 1 33 33 H 0.96698 * 113.99731 * 300.00698 * 4 2 1 34 34 H 1.09003 * 109.46826 * 64.99998 * 5 2 1 35 35 H 1.08995 * 109.46806 * 304.99940 * 5 2 1 36 36 H 0.97005 * 119.99880 * 0.02562 * 7 6 5 37 37 H 0.96998 * 120.00000 * 355.35605 * 10 8 7 38 38 H 1.08002 * 119.98910 * 359.97438 * 12 11 10 39 39 H 1.07996 * 119.91679 * 180.24909 * 13 12 11 40 40 H 1.07999 * 120.00662 * 180.02562 * 16 14 13 41 41 H 0.96996 * 120.00069 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0399 -0.7213 1.2492 6 8 3.4642 -0.6206 1.3094 7 7 4.0396 -1.2586 2.4349 8 6 5.3756 -1.2384 2.6110 9 8 6.0868 -0.6720 1.8037 10 7 5.9238 -1.8505 3.6793 11 6 7.3175 -1.9138 3.8119 12 6 8.1063 -0.8629 3.3683 13 6 9.4802 -0.9239 3.5048 14 6 10.0745 -2.0385 4.0740 15 9 11.4184 -2.0952 4.2003 16 6 9.2949 -3.0934 4.5138 17 6 7.9147 -3.0365 4.3846 18 8 7.1474 -4.0703 4.8159 19 6 7.7772 -5.0720 5.4617 20 1 8.8541 -5.0687 5.5440 21 6 7.0426 -6.1066 6.0202 22 7 5.7307 -6.1105 5.9203 23 14 7.9153 -7.4951 6.9146 24 1 8.6827 -6.9414 8.0591 25 1 6.9122 -8.4684 7.4164 26 1 8.8448 -8.1789 5.9799 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7210 -1.5952 -1.2330 34 1 1.7515 -1.7716 1.2055 35 1 1.6053 -0.2618 2.1369 36 1 3.4722 -1.7108 3.0788 37 1 5.3537 -2.2472 4.3565 38 1 7.6464 0.0053 2.9198 39 1 10.0925 -0.1029 3.1625 40 1 9.7606 -3.9610 4.9575 41 1 5.2166 -6.8342 6.3113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794239498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:28 Heat of formation + Delta-G solvation = -111.676201 kcal Electronic energy + Delta-G solvation = -27596.410640 eV Core-core repulsion = 23201.705384 eV Total energy + Delta-G solvation = -4394.705256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.131 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -48.23864 -40.16999 -39.15895 -38.56776 -36.81977 -36.12805 -34.06833 -32.96977 -32.42396 -31.59673 -29.38073 -28.05496 -27.70763 -26.32641 -25.50653 -22.65941 -21.79346 -21.03023 -20.50033 -18.66256 -18.33472 -18.26282 -17.37775 -16.90141 -16.33686 -16.19442 -15.45822 -15.23528 -15.06961 -14.91176 -14.86614 -14.37404 -14.31296 -14.02448 -13.62119 -13.54003 -13.35134 -13.22823 -12.80946 -12.56744 -12.47779 -12.36850 -12.14578 -12.00310 -11.68712 -11.43234 -11.22328 -11.04124 -10.94456 -10.73836 -10.58277 -10.45205 -9.87703 -9.78546 -9.47295 -8.97068 -8.84240 -7.87503 -7.12620 -6.62234 -4.19914 1.59400 1.91209 2.13300 3.06663 3.07080 3.09377 3.43723 3.76749 3.84042 4.02528 4.34898 4.35404 4.37952 4.48524 4.75641 4.85911 4.92941 4.94538 5.02666 5.11946 5.18917 5.40078 5.53456 5.58863 5.61109 5.71099 5.75246 6.03235 6.05831 6.16193 6.57291 6.58873 6.80677 6.90621 6.96750 7.05930 7.06613 7.25676 7.36722 7.66007 7.82289 8.16593 8.82930 8.85662 9.45302 10.54855 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.003062 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.465584 B = 9143.340611 C =11236.945998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.139 3.861 3 C -0.141 4.141 4 O -0.549 6.549 5 C 0.002 3.998 6 O -0.113 6.113 7 N -0.617 5.617 8 C 0.721 3.279 9 O -0.565 6.565 10 N -0.656 5.656 11 C 0.078 3.922 12 C -0.048 4.048 13 C -0.227 4.227 14 C 0.130 3.870 15 F -0.151 7.151 16 C -0.258 4.258 17 C 0.159 3.841 18 O -0.168 6.168 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.043 3.957 22 N -0.862 5.862 23 Si 0.942 3.058 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.377 0.623 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.404 0.596 37 H 0.412 0.588 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 9.026 -5.094 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.097 3.903 3 C -0.199 4.199 4 O -0.355 6.355 5 C -0.076 4.076 6 O -0.116 6.116 7 N -0.323 5.323 8 C 0.422 3.578 9 O -0.440 6.440 10 N -0.307 5.307 11 C -0.016 4.016 12 C -0.069 4.069 13 C -0.247 4.247 14 C 0.110 3.890 15 F -0.130 7.130 16 C -0.279 4.279 17 C 0.103 3.897 18 O -0.071 6.071 19 C -0.468 4.468 20 H 0.112 0.888 21 C -0.161 4.161 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.194 1.194 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.224 0.776 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.248 0.752 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.885 10.019 -6.069 15.328 hybrid contribution -0.505 -1.935 1.308 2.390 sum -10.390 8.084 -4.761 13.999 Atomic orbital electron populations 1.22453 0.94159 1.03039 1.03669 1.21187 0.92543 0.93697 0.82900 1.21738 1.03523 0.92296 1.02303 1.86657 1.77189 1.28888 1.42745 1.23854 0.82345 1.01220 1.00208 1.90641 1.18961 1.72262 1.29690 1.46137 1.04869 1.59968 1.21285 1.15274 0.79919 0.80511 0.82059 1.90905 1.59311 1.48495 1.45307 1.41904 1.05677 1.59807 1.23286 1.16582 0.80894 0.93904 1.10221 1.20710 0.92085 0.97047 0.97059 1.20495 0.94970 0.99171 1.10109 1.17469 0.76122 0.95610 0.99812 1.91413 1.30657 1.96803 1.94120 1.20836 0.93120 1.01393 1.12503 1.18790 0.89307 0.86968 0.94646 1.83927 1.34254 1.25416 1.63540 1.21311 0.92656 0.99334 1.33513 0.88839 1.25268 0.95677 0.98300 0.96897 1.69996 1.04991 1.32588 1.42011 0.85751 0.78677 0.79420 0.79505 1.19342 1.20229 1.19361 0.91078 0.90664 0.91871 0.90502 0.91652 0.91098 0.77558 0.91684 0.91159 0.75616 0.75234 0.83813 0.85836 0.83902 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 8.81 37.16 0.33 -0.69 16 2 C 0.14 1.23 1.20 -90.62 -0.11 1.12 16 3 C -0.14 -1.34 8.65 37.16 0.32 -1.02 16 4 O -0.55 -5.84 12.95 -40.08 -0.52 -6.36 16 5 C 0.00 0.02 5.35 37.16 0.20 0.22 16 6 O -0.11 -1.64 10.19 -34.80 -0.35 -1.99 16 7 N -0.62 -8.99 6.39 27.63 0.18 -8.82 16 8 C 0.72 13.30 8.56 -86.92 -0.74 12.56 16 9 O -0.56 -12.36 14.16 -12.86 -0.18 -12.55 16 10 N -0.66 -12.08 5.20 -14.07 -0.07 -12.16 16 11 C 0.08 1.63 6.33 -83.44 -0.53 1.10 16 12 C -0.05 -0.95 8.70 -39.43 -0.34 -1.29 16 13 C -0.23 -4.25 10.02 -39.48 -0.40 -4.65 16 14 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 15 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 16 C -0.26 -5.58 9.14 -39.36 -0.36 -5.94 16 17 C 0.16 3.63 6.66 -38.94 -0.26 3.38 16 18 O -0.17 -4.33 9.32 0.04 0.00 -4.33 16 19 C -0.39 -10.19 9.49 30.88 0.29 -9.90 16 20 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 21 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 22 N -0.86 -23.05 13.67 55.48 0.76 -22.29 16 23 Si 0.94 19.43 29.55 -169.99 -5.02 14.41 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.38 2.61 9.05 45.56 0.41 3.02 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.40 4.49 8.56 -40.82 -0.35 4.14 16 37 H 0.41 6.95 8.59 -40.82 -0.35 6.60 16 38 H 0.14 2.77 6.19 -52.49 -0.32 2.45 16 39 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.14 3.08 5.64 -52.49 -0.30 2.78 16 41 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -32.91 359.85 -5.83 -38.74 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -4.09 Total: 14.58 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.98 Total: -1.80 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.86 Total: -43.27 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.06 Total: -25.22 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.91 -5.83 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794239498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.939 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds