Wall clock time and date at job start Tue Mar 31 2020 15:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47475 * 2 1 4 4 O 1.42908 * 109.47328 * 240.00148 * 2 1 3 5 5 C 1.53003 * 109.47001 * 120.00281 * 2 1 3 6 6 O 1.42904 * 109.47067 * 184.99600 * 5 2 1 7 7 N 1.41595 * 113.99918 * 179.97438 * 6 5 2 8 8 C 1.34773 * 119.99893 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00361 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99901 * 180.27938 * 8 7 6 11 11 C 1.40138 * 120.00081 * 175.35645 * 10 8 7 12 12 C 1.38688 * 120.07459 * 34.59721 * 11 10 8 13 13 C 1.38200 * 120.02195 * 179.72486 * 12 11 10 14 14 C 1.38549 * 120.17243 * 0.55031 * 13 12 11 15 15 F 1.35101 * 119.92670 * 179.74446 * 14 13 12 16 16 C 1.38350 * 120.14875 * 359.72481 * 14 13 12 17 17 C 1.38734 * 119.97931 * 0.02562 * 16 14 13 18 18 O 1.35777 * 120.08833 * 180.02562 * 17 16 14 19 19 C 1.34803 * 116.99839 * 5.43667 * 18 17 16 20 20 H 1.08003 * 120.00175 * 354.94414 * 19 18 17 21 21 C 1.38635 * 120.00104 * 174.95430 * 19 18 17 22 22 N 1.31578 * 119.99819 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46915 * 60.00009 * 23 21 19 25 25 H 1.48504 * 109.47412 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47244 * 300.00164 * 23 21 19 27 27 H 1.09003 * 109.47124 * 299.99999 * 1 2 3 28 28 H 1.09010 * 109.46745 * 59.99762 * 1 2 3 29 29 H 1.08995 * 109.47640 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47298 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47671 * 300.00332 * 3 2 1 32 32 H 1.09003 * 109.46944 * 59.99891 * 3 2 1 33 33 H 0.96698 * 113.99731 * 300.00698 * 4 2 1 34 34 H 1.09003 * 109.46826 * 64.99998 * 5 2 1 35 35 H 1.08995 * 109.46806 * 304.99940 * 5 2 1 36 36 H 0.97005 * 119.99880 * 0.02562 * 7 6 5 37 37 H 0.96998 * 120.00000 * 355.35605 * 10 8 7 38 38 H 1.08002 * 119.98910 * 359.97438 * 12 11 10 39 39 H 1.07996 * 119.91679 * 180.24909 * 13 12 11 40 40 H 1.07999 * 120.00662 * 180.02562 * 16 14 13 41 41 H 0.96996 * 120.00069 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0399 -0.7213 1.2492 6 8 3.4642 -0.6206 1.3094 7 7 4.0396 -1.2586 2.4349 8 6 5.3756 -1.2384 2.6110 9 8 6.0868 -0.6720 1.8037 10 7 5.9238 -1.8505 3.6793 11 6 7.3175 -1.9138 3.8119 12 6 8.1063 -0.8629 3.3683 13 6 9.4802 -0.9239 3.5048 14 6 10.0745 -2.0385 4.0740 15 9 11.4184 -2.0952 4.2003 16 6 9.2949 -3.0934 4.5138 17 6 7.9147 -3.0365 4.3846 18 8 7.1474 -4.0703 4.8159 19 6 7.7772 -5.0720 5.4617 20 1 8.8541 -5.0687 5.5440 21 6 7.0426 -6.1066 6.0202 22 7 5.7307 -6.1105 5.9203 23 14 7.9153 -7.4951 6.9146 24 1 8.6827 -6.9414 8.0591 25 1 6.9122 -8.4684 7.4164 26 1 8.8448 -8.1789 5.9799 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.7210 -1.5952 -1.2330 34 1 1.7515 -1.7716 1.2055 35 1 1.6053 -0.2618 2.1369 36 1 3.4722 -1.7108 3.0788 37 1 5.3537 -2.2472 4.3565 38 1 7.6464 0.0053 2.9198 39 1 10.0925 -0.1029 3.1625 40 1 9.7606 -3.9610 4.9575 41 1 5.2166 -6.8342 6.3113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794239498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:27 Heat of formation + Delta-G solvation = -135.512354 kcal Electronic energy + Delta-G solvation = -27597.444253 eV Core-core repulsion = 23201.705384 eV Total energy + Delta-G solvation = -4395.738869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.81327 -41.70980 -40.43372 -39.73820 -38.18551 -37.49914 -35.62795 -34.29491 -33.85716 -32.72894 -31.04226 -29.60476 -28.33731 -27.39197 -27.09850 -24.25441 -23.41330 -22.28046 -21.47961 -20.16809 -19.86243 -19.71298 -18.93495 -17.89966 -17.65820 -17.21688 -16.99993 -16.86589 -16.58096 -16.18345 -15.97327 -15.84477 -15.57870 -15.41081 -15.23267 -15.01534 -14.85444 -14.31662 -14.02827 -13.76893 -13.46948 -13.42869 -13.21063 -13.07895 -13.02475 -12.66142 -12.57585 -12.36033 -12.16375 -12.15935 -11.74252 -11.65274 -11.46612 -11.16231 -11.00762 -10.80347 -10.05861 -9.54004 -8.77288 -8.49665 -6.15416 0.17039 0.47488 0.50572 1.39204 1.47162 1.52267 1.95881 2.15528 2.60440 2.69444 3.06896 3.17266 3.21763 3.46132 3.53175 3.64795 3.79433 3.95595 4.05610 4.17721 4.29381 4.36573 4.37751 4.56004 4.70487 4.82955 4.88456 4.95347 4.97208 5.02260 5.19345 5.22646 5.25988 5.30602 5.35960 5.52013 5.54855 5.88939 5.95163 6.06778 6.78805 6.81094 6.95142 7.42816 7.63440 8.70418 Molecular weight = 328.13amu Principal moments of inertia in cm(-1) A = 0.011784 B = 0.003062 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.465584 B = 9143.340611 C =11236.945998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 C -0.143 4.143 4 O -0.576 6.576 5 C -0.006 4.006 6 O -0.139 6.139 7 N -0.601 5.601 8 C 0.721 3.279 9 O -0.602 6.602 10 N -0.653 5.653 11 C 0.079 3.921 12 C -0.050 4.050 13 C -0.204 4.204 14 C 0.125 3.875 15 F -0.144 7.144 16 C -0.263 4.263 17 C 0.135 3.865 18 O -0.200 6.200 19 C -0.417 4.417 20 H 0.100 0.900 21 C -0.007 4.007 22 N -0.904 5.904 23 Si 1.010 2.990 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.263 1.263 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.390 0.610 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.421 0.579 37 H 0.418 0.582 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 9.536 -4.982 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.094 3.906 3 C -0.201 4.201 4 O -0.384 6.384 5 C -0.084 4.084 6 O -0.142 6.142 7 N -0.306 5.306 8 C 0.422 3.578 9 O -0.481 6.481 10 N -0.304 5.304 11 C -0.016 4.016 12 C -0.071 4.071 13 C -0.224 4.224 14 C 0.105 3.895 15 F -0.123 7.123 16 C -0.283 4.283 17 C 0.081 3.919 18 O -0.105 6.105 19 C -0.493 4.493 20 H 0.117 0.883 21 C -0.207 4.207 22 N -0.540 5.540 23 Si 0.830 3.170 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.188 1.188 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.240 0.760 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.264 0.736 37 H 0.255 0.745 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.156 0.844 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.384 10.543 -5.956 15.952 hybrid contribution -0.368 -1.872 1.137 2.221 sum -10.752 8.671 -4.819 14.629 Atomic orbital electron populations 1.22383 0.91310 1.04230 1.04488 1.21365 0.94433 0.92791 0.81962 1.21773 1.01236 0.93489 1.03554 1.86619 1.77956 1.30179 1.43656 1.24229 0.79792 1.02737 1.01615 1.90653 1.21992 1.72325 1.29269 1.45832 1.03983 1.59102 1.21712 1.15320 0.80935 0.80080 0.81496 1.90866 1.60633 1.50120 1.46438 1.41843 1.05086 1.59769 1.23687 1.16803 0.82168 0.93492 1.09146 1.20876 0.92478 0.96889 0.96856 1.20867 0.94870 0.99193 1.07440 1.17452 0.76387 0.95541 1.00085 1.91431 1.29977 1.96766 1.94077 1.20922 0.93041 1.01903 1.12476 1.19097 0.89887 0.87267 0.95612 1.83906 1.35030 1.26354 1.65200 1.21717 0.93255 1.00050 1.34238 0.88298 1.26338 0.96431 1.00480 0.97418 1.70101 1.06444 1.33795 1.43700 0.84759 0.77688 0.76193 0.78382 1.18395 1.19493 1.18776 0.89575 0.90509 0.90536 0.93987 0.91131 0.89217 0.76022 0.90088 0.88796 0.73618 0.74544 0.83139 0.82484 0.84358 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.81 71.98 0.63 -0.86 16 2 C 0.14 2.21 1.20 -10.79 -0.01 2.20 16 3 C -0.14 -2.60 8.65 71.98 0.62 -1.98 16 4 O -0.58 -11.83 12.95 -144.34 -1.87 -13.70 16 5 C -0.01 -0.11 5.35 71.98 0.39 0.28 16 6 O -0.14 -3.95 10.19 -16.46 -0.17 -4.12 16 7 N -0.60 -17.10 6.39 -184.75 -1.18 -18.28 16 8 C 0.72 26.49 8.56 179.05 1.53 28.03 16 9 O -0.60 -26.37 14.16 13.36 0.19 -26.18 16 10 N -0.65 -24.18 5.20 -316.70 -1.65 -25.83 16 11 C 0.08 3.29 6.33 38.22 0.24 3.53 16 12 C -0.05 -1.92 8.70 22.37 0.19 -1.72 16 13 C -0.20 -7.18 10.02 22.33 0.22 -6.95 16 14 C 0.13 4.83 7.29 22.37 0.16 4.99 16 15 F -0.14 -5.22 17.26 44.97 0.78 -4.45 16 16 C -0.26 -11.40 9.14 22.42 0.20 -11.20 16 17 C 0.14 6.28 6.66 22.68 0.15 6.43 16 18 O -0.20 -10.59 9.32 -22.76 -0.21 -10.80 16 19 C -0.42 -22.19 9.49 67.91 0.64 -21.54 16 20 H 0.10 4.94 5.20 -2.91 -0.02 4.92 16 21 C -0.01 -0.35 5.49 84.83 0.47 0.11 16 22 N -0.90 -49.44 13.67 21.61 0.30 -49.14 16 23 Si 1.01 39.88 29.55 68.60 2.03 41.90 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.04 1.05 7.56 -2.39 -0.02 1.03 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.39 5.05 9.05 -74.06 -0.67 4.38 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.42 8.90 8.56 -92.70 -0.79 8.10 16 37 H 0.42 14.33 8.59 -92.71 -0.80 13.53 16 38 H 0.15 5.62 6.19 -2.91 -0.02 5.60 16 39 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 40 H 0.14 6.04 5.64 -2.91 -0.02 6.03 16 41 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -72.26 359.85 2.53 -69.73 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -1.14 Total: 39.55 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.45 Total: 1.31 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -2.53 Total: -93.25 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -2.06 Total: -54.80 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -72.26 2.53 -69.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794239498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.779 kcal (2) G-P(sol) polarization free energy of solvation -72.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds